Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 0.0e+00 2112.8 1072 100.0
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 0.0e+00 1960.7 1040 96.9
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1728.4 1041 85.0
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1670.2 1047 82.5
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1664.8 1033 83.4
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1664.8 1047 82.4
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1632.1 1041 80.1
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1630.9 1042 80.8
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1619.8 1040 80.8
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1618.6 1048 80.2
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 0.0e+00 1617.8 1033 78.8
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 0.0e+00 1611.7 1034 80.1
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1611.3 1037 79.8
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 0.0e+00 1606.7 1033 79.6
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1601.6 1043 80.2
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 0.0e+00 1596.6 1024 78.6
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 0.0e+00 1591.6 1026 78.2
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 0.0e+00 1591.6 1041 78.5
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1582.0 1033 77.9
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1568.1 1041 77.9
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1567.0 1035 77.1
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 0.0e+00 1566.6 1011 79.5
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1562.4 1013 78.2
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1558.1 1048 77.0
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 0.0e+00 1557.0 1049 77.2
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1554.7 1041 77.0
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1550.0 1043 76.6
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1547.7 1041 76.9
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 0.0e+00 1541.2 1091 74.0
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 0.0e+00 1539.2 1048 75.5
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1536.5 1042 77.1
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1535.4 1043 75.7
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1535.0 1041 76.3
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 0.0e+00 1533.5 1037 77.0
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 0.0e+00 1530.8 1067 73.9
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1529.2 1046 75.4
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1528.8 1014 77.3
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 0.0e+00 1528.5 1051 75.1
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1527.7 1041 76.8
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1525.8 1067 74.5
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 0.0e+00 1525.8 1020 77.0
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1524.2 1035 74.9
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1524.2 987 79.6
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1521.9 1047 75.6
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 0.0e+00 1516.1 1047 74.3
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 0.0e+00 1515.7 1048 76.2
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1515.4 1033 74.6
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1515.0 1012 76.5
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 0.0e+00 1514.6 1041 75.0
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 0.0e+00 1513.8 1060 75.3
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1511.5 1026 76.0
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1507.3 1079 73.3
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 0.0e+00 1506.9 1035 76.3
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1502.3 1042 74.7
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1498.4 1026 75.7
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1495.7 1026 75.6
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1494.9 1041 74.6
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1493.0 1038 75.0
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1490.3 1048 74.4
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1482.6 1033 75.4
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 0.0e+00 1469.5 1043 73.8
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1459.1 1017 74.1
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 0.0e+00 1455.7 1042 72.2
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 0.0e+00 1454.5 1015 74.0
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 0.0e+00 1454.1 1016 74.2
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 0.0e+00 1448.0 1029 73.1
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1444.5 1020 73.9
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1444.5 1020 73.9
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 0.0e+00 1443.3 1014 74.0
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 0.0e+00 1442.2 1014 74.0
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 0.0e+00 1437.2 1013 73.7
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 0.0e+00 1434.9 1022 73.4
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 0.0e+00 1433.3 1014 73.6
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1428.3 1046 70.7
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1426.8 948 77.1
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1426.4 1046 70.8
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 0.0e+00 1421.4 1071 71.0
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1420.2 1045 70.4
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1418.7 1040 71.8
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 0.0e+00 1418.3 1020 72.3
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 0.0e+00 1417.1 1047 70.2
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 0.0e+00 1417.1 1064 69.6
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1414.8 1085 68.4
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 0.0e+00 1414.1 1026 72.1
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 0.0e+00 1405.6 1023 72.2
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 0.0e+00 1398.6 1029 70.4
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 0.0e+00 1395.9 1015 72.0
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1386.7 1018 71.2
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 0.0e+00 1384.8 1019 71.2
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 0.0e+00 1384.0 1016 71.6
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1382.1 897 79.2
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 0.0e+00 1379.4 1017 71.7
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1378.2 898 80.0
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1375.1 1043 69.7
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 0.0e+00 1373.6 1012 71.1
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1369.4 1016 71.7
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1365.1 1053 67.9
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1364.4 1016 71.3
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1362.4 1015 70.8
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1360.5 1042 68.3
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1354.0 923 76.7
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1351.7 1025 69.6
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1350.9 1025 69.6
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1349.0 1025 69.4
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 0.0e+00 1346.6 1022 70.0
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 0.0e+00 1345.1 1066 67.4
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1341.3 997 70.8
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 0.0e+00 1332.0 1039 67.9
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 0.0e+00 1328.5 1059 66.6
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1325.8 1040 66.9
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1321.2 1017 68.5
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1321.2 1017 69.0
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1321.2 1014 69.0
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1320.4 1016 69.1
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 0.0e+00 1307.0 1022 67.8
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1305.0 1014 68.5
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 0.0e+00 1298.1 1031 66.4
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 0.0e+00 1244.6 1015 65.0
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 0.0e+00 1223.4 937 68.1
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 0.0e+00 1222.2 1046 64.4
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 0.0e+00 1204.5 1042 63.2
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1198.3 1030 63.9
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1192.6 1039 63.3
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1182.5 1001 63.3
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 0.0e+00 1171.8 1025 62.4
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 0.0e+00 1153.3 1069 60.6
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1152.5 856 70.0
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 0.0e+00 1137.1 1028 59.6
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 0.0e+00 1111.3 1056 62.1
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 0.0e+00 1095.5 1001 60.3
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 2.5e-294 1015.8 919 59.3
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 1.6e-288 996.5 813 67.7
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 2.2e-282 976.1 851 62.0
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 3.7e-282 975.3 720 71.9
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 1.7e-266 923.3 748 68.7
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 1.9e-265 919.8 999 52.5
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 2.1e-253 879.8 1051 48.7
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 8.7e-247 857.8 986 50.0
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 8.2e-245 851.3 988 49.3
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 8.4e-242 841.3 1045 47.1
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 2.9e-226 789.6 834 52.2
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 1.6e-224 783.9 825 53.7
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 2.2e-218 763.5 732 62.6
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 1.8e-199 700.7 648 59.6
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 4.4e-198 696.0 922 45.1
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 1.0e-183 648.3 844 49.9
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 1.9e-177 627.5 643 55.7
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 2.8e-168 597.0 987 39.0
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 9.2e-164 582.0 677 52.0
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 4.7e-160 569.7 635 52.1
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 6.4e-149 532.7 622 51.1
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 1.1e-143 515.4 1130 34.2
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 1.6e-136 491.5 597 49.9
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 4.8e-128 463.4 380 61.8
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.9e-124 451.4 276 83.0
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 6.1e-123 446.4 648 44.6
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 3.8e-109 400.6 236 85.2
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 3.4e-89 334.3 268 67.2
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 9.1e-87 326.2 320 56.9
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 6.3e-80 303.5 1062 29.8
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 1.3e-69 269.2 291 53.3
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 1.2e-62 246.1 1085 25.7
CDE02G2628 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 2.9e-56 224.9 218 53.7
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 2.3e-53 215.3 922 24.7
Pp3c19_9596 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.2e-49 203.0 216 49.1
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 2.7e-46 191.8 173 54.9
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 4.6e-46 191.0 173 57.2
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 1.2e-43 183.0 155 61.3
Hma1.2p1_0468F.1_g158780 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 2.8e-43 181.8 150 60.7
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 1.5e-33 149.4 187 48.1
SalBow1G6973 Salvia bowleyana HOM05D003977 ORTHO05D004536 3.8e-32 144.8 128 57.0
Hma1.2p1_0112F.1_g054450 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 9.0e-26 123.6 99 59.6
Hma1.2p1_1036F.1_g250510 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 9.0e-26 123.6 99 59.6
SalBow2G2207 Salvia bowleyana HOM05D003977 ORTHO05D004536 1.5e-25 122.9 112 55.4
Hma1.2p1_0417F.1_g148820 Hydrangea macrophylla HOM05D000825 ORTHO05D003684 3.8e-16 91.7 61 77.0
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 9.3e-15 87.0 85 61.2
Medtr3g006170 Medicago truncatula HOM05D003977 ORTHO05D004536 1.8e-10 72.8 65 53.8
Actinidia33992 Actinidia chinensis HOM05D003977 ORTHO05D004536 5.0e-08 64.7 46 76.1
Actinidia09594 Actinidia chinensis HOM05D003977 ORTHO05D004536 6.5e-08 64.3 47 72.3


User provided reference genes

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