Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_02611 Corylus avellana HOM05D004585 ORTHO05D005640 1.2e-118 429.9 216 100.0
Cfa011225 Carpinus fangiana HOM05D004585 ORTHO05D005640 4.2e-116 421.4 216 98.6
Cfa013557 Carpinus fangiana HOM05D004585 ORTHO05D005640 1.3e-112 409.8 216 94.9
CiPaw.01G204400 Carya illinoinensis HOM05D004585 ORTHO05D005640 7.2e-100 367.5 216 84.7
Thecc.10G109700 Theobroma cacao HOM05D004585 ORTHO05D005640 3.5e-94 348.6 216 78.7
Thecc.K0008500 Theobroma cacao HOM05D004585 ORTHO05D005640 3.5e-94 348.6 216 78.7
QL04p041242 Quercus lobata HOM05D004585 ORTHO05D005640 1.3e-93 346.7 214 81.3
Haze_22178 Corylus avellana HOM05D004585 ORTHO05D005640 4.2e-92 341.7 217 83.9
Dinv20840 Davidia involucrata HOM05D004585 ORTHO05D005640 4.2e-92 341.7 215 80.9
Duzib128G1105 Durio zibethinus HOM05D004585 ORTHO05D005640 2.1e-91 339.3 221 76.5
Gorai.013G013300 Gossypium raimondii HOM05D004585 ORTHO05D005640 2.7e-91 339.0 216 76.9
Hma1.2p1_0567F.1_g180100 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 2.7e-91 339.0 216 77.8
THA.LOC104816458 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 8.0e-91 337.4 220 75.9
Gohir.A13G011400 Gossypium hirsutum HOM05D004585 ORTHO05D005640 1.0e-90 337.0 216 76.4
Gohir.D13G012100 Gossypium hirsutum HOM05D004585 ORTHO05D005640 2.3e-90 335.9 216 76.4
arahy.Tifrunner.gnm1.ann1.48LUDE Arachis hypogaea HOM05D004585 ORTHO05D005640 4.0e-90 335.1 216 75.5
Sed0007729 Sechium edule HOM05D004585 ORTHO05D005640 4.0e-90 335.1 216 76.4
TWI38G0710 Tripterygium wilfordii HOM05D004585 ORTHO05D005640 5.2e-90 334.7 216 77.8
Eucgr.G02711 Eucalyptus grandis HOM05D004585 ORTHO05D005640 8.8e-90 334.0 218 74.8
arahy.Tifrunner.gnm1.ann1.CB8VHN Arachis hypogaea HOM05D004585 ORTHO05D005640 1.2e-89 333.6 216 75.5
Phvul.005G089300 Phaseolus vulgaris HOM05D004585 ORTHO05D005640 1.5e-89 333.2 214 75.2
Sed0016970 Sechium edule HOM05D004585 ORTHO05D005640 3.4e-89 332.0 216 76.4
THA.LOC104823192 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 3.4e-89 332.0 222 75.2
vmacro21510 Vaccinium macrocarpon HOM05D004585 ORTHO05D005640 1.3e-88 330.1 216 75.9
Actinidia18578 Actinidia chinensis HOM05D004585 ORTHO05D005640 1.7e-88 329.7 216 74.5
MELO3C019883.2 Cucumis melo HOM05D004585 ORTHO05D005640 3.7e-88 328.6 216 75.0
ClCG08G008100 Citrullus lanatus HOM05D004585 ORTHO05D005640 4.8e-88 328.2 216 75.0
TPR.G4853 Trifolium pratense HOM05D004585 ORTHO05D005640 8.3e-88 327.4 214 74.8
Atru.chr12.969 Acer truncatum HOM05D004585 ORTHO05D005640 1.8e-87 326.2 216 74.5
Manes.05G202500 Manihot esculenta HOM05D004585 ORTHO05D005640 1.8e-87 326.2 216 73.6
Prupe.1G580700 Prunus persica HOM05D004585 ORTHO05D005640 1.8e-87 326.2 218 77.1
TAR633G1318 Trochodendron aralioides HOM05D004585 ORTHO05D005640 1.8e-87 326.2 217 73.3
Psat6g221600 Pisum sativum HOM05D004585 ORTHO05D005640 3.1e-87 325.5 214 72.0
Glyma.02G173000 Glycine max HOM05D004585 ORTHO05D005640 4.1e-87 325.1 216 75.0
GSVIVG01021851001 Vitis vinifera HOM05D004585 ORTHO05D005640 4.1e-87 325.1 216 75.0
Ca_04982_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 5.4e-87 324.7 214 72.9
Ca_11096_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 5.4e-87 324.7 214 72.9
Glyma.09G111400 Glycine max HOM05D004585 ORTHO05D005640 7.0e-87 324.3 218 73.9
CsaV3_6G004080 Cucumis sativus L. HOM05D004585 ORTHO05D005640 9.1e-87 323.9 216 73.6
Lalb_Chr14g0365991 Lupinus albus HOM05D004585 ORTHO05D005640 9.1e-87 323.9 215 75.3
Lalb_Chr22g0354511 Lupinus albus HOM05D004585 ORTHO05D005640 9.1e-87 323.9 215 74.9
PGR142G4346 Punica granatum HOM05D004585 ORTHO05D005640 1.6e-86 323.2 215 75.8
Ciclev10013752m.g Citrus clementina HOM05D004585 ORTHO05D005640 5.9e-86 321.2 213 75.1
Lj6g0005217 Lotus japonicus HOM05D004585 ORTHO05D005640 1.0e-85 320.5 213 72.3
VMungo1080G1669 Vigna mungo HOM05D004585 ORTHO05D005640 1.3e-85 320.1 214 72.0
Hma1.2p1_0026F.1_g016750 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 2.2e-85 319.3 216 75.0
CSS0035600 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D000484 3.8e-85 318.5 216 73.6
Rhsim03G0106100 Rhododendron simsii HOM05D004585 ORTHO05D005640 6.5e-85 317.8 217 73.7
Actinidia06707 Actinidia chinensis HOM05D004585 ORTHO05D005640 1.5e-84 316.6 216 72.2
Cc02_g10240 Coffea canephora HOM05D004585 ORTHO05D005640 3.2e-84 315.5 220 74.1
Nn3g20167 Nelumbo nucifera HOM05D004585 ORTHO05D005640 1.2e-83 313.5 218 71.1
TAR633G2635 Trochodendron aralioides HOM05D004585 ORTHO05D005640 1.2e-83 313.5 214 72.0
MD08G1243300 Malus domestica HOM05D004585 ORTHO05D005640 2.1e-83 312.8 221 71.5
Medtr1g108290 Medicago truncatula HOM05D004585 ORTHO05D005640 2.1e-83 312.8 215 71.2
Peaxi162Scf00150g00411 Petunia axillaris HOM05D004585 ORTHO05D005640 4.7e-83 311.6 215 72.6
Nitab4.5_0000442g0080 Nicotiana tabacum HOM05D004585 ORTHO05D005640 1.4e-82 310.1 214 73.4
Thhalv10014607m.g Eutrema salsugineum HOM05D004585 ORTHO05D005640 3.0e-82 308.9 222 68.0
Potri.010G234800 Populus trichocarpa HOM05D004585 ORTHO05D005640 3.0e-82 308.9 220 70.0
Sopen06g031130 Solanum pennellii HOM05D004585 ORTHO05D005640 3.0e-82 308.9 218 72.5
Sopen11g026360 Solanum pennellii HOM05D004585 ORTHO05D005640 3.0e-82 308.9 216 71.8
PGSC0003DMG400000462 Solanum tuberosum HOM05D004585 ORTHO05D005640 6.8e-82 307.8 216 71.3
PSO717G0039 Papaver somniferum HOM05D004585 ORTHO05D005640 8.8e-82 307.4 228 71.1
PSO675G5749 Papaver somniferum HOM05D004585 ORTHO05D005640 1.5e-81 306.6 226 71.2
CANSAT56G4487 Cannabis sativa HOM05D004585 ORTHO05D005640 2.0e-81 306.2 213 71.4
Oeu027977.1 Olea europaea HOM05D004585 ORTHO05D005640 5.7e-81 304.7 217 70.0
PGSC0003DMG400007128 Solanum tuberosum HOM05D004585 ORTHO05D005640 5.7e-81 304.7 218 72.0
ECA238G4124 Erigeron canadensis HOM05D004585 ORTHO05D005640 7.5e-81 304.3 214 70.1
PSO173G0033 Papaver somniferum HOM05D004585 ORTHO05D005640 9.8e-81 303.9 228 70.6
Lsat_1_v5_gn_2_86220 Lactuca sativa HOM05D004585 ORTHO05D005640 1.7e-80 303.1 214 69.6
Sp6g38180 Schrenkiella parvula HOM05D004585 ORTHO05D005640 2.2e-80 302.8 223 66.4
Aa31LG3G3420 Aethionema arabicum HOM05D004585 ORTHO05D005640 2.8e-80 302.4 220 67.7
BraA02t04819Z Brassica rapa HOM05D004585 ORTHO05D005640 2.8e-80 302.4 220 67.7
Dinv30656 Davidia involucrata HOM05D004585 ORTHO05D005640 2.8e-80 302.4 216 73.1
Lj3A931T47 Lonicera japonica HOM05D004585 ORTHO05D005640 2.8e-80 302.4 199 75.9
HanXRQChr14g0456901 Helianthus annuus HOM05D004585 ORTHO05D005640 4.9e-80 301.6 206 72.3
C09p72190 Brassica napus HOM05D004585 ORTHO05D005640 6.3e-80 301.2 224 67.0
BolC9t59963H Brassica oleracea HOM05D004585 ORTHO05D005640 6.3e-80 301.2 224 67.0
CARHR208690 Cardamine hirsuta HOM05D004585 ORTHO05D005640 3.1e-79 298.9 223 65.9
RcHm_v2.0_Chr4g0433501 Rosa chinensis HOM05D004585 ORTHO05D005640 4.1e-79 298.5 214 72.4
BcaC06g32168 Brassica carinata HOM05D004585 ORTHO05D005640 5.4e-79 298.1 224 66.5
A10p31500 Brassica napus HOM05D004585 ORTHO05D005640 7.0e-79 297.7 224 66.5
BraA10t45196Z Brassica rapa HOM05D004585 ORTHO05D005640 7.0e-79 297.7 224 66.5
Cpa.g.sc128.48 Carica papaya HOM05D004585 ORTHO05D005640 7.0e-79 297.7 199 73.9
Sabra10G0182000 Salix brachista HOM05D004585 ORTHO05D005640 9.2e-79 297.4 220 67.3
HanXRQChr10g0319081 Helianthus annuus HOM05D004585 ORTHO05D005640 2.0e-78 296.2 208 71.2
MSTRG.412 Avicennia marina HOM05D004585 ORTHO05D005640 3.5e-78 295.4 211 71.1
AL6G14230 Arabidopsis lyrata HOM05D004585 ORTHO05D005640 4.5e-78 295.0 222 65.8
Carub.0006s0352 Capsella rubella HOM05D004585 ORTHO05D005640 5.9e-78 294.7 221 66.1
BcaC03g12939 Brassica carinata HOM05D004585 ORTHO05D005640 1.0e-77 293.9 224 65.6
C02p02000 Brassica napus HOM05D004585 ORTHO05D005640 1.0e-77 293.9 224 65.2
Sc09g0005570 Simmondsia chinensis HOM05D004585 ORTHO05D005640 1.7e-77 293.1 207 70.0
SGA_v2.0_scaffold10G05319 Striga asiatica HOM05D004585 ORTHO05D005640 2.3e-77 292.7 217 69.1
SGA_v2.0_scaffold113G31721 Striga asiatica HOM05D004585 ORTHO05D005640 2.3e-77 292.7 217 68.2
Atru.chr10.1244 Acer truncatum HOM05D004585 ORTHO05D005640 2.9e-77 292.4 184 77.7
COL.COLO4_33895 Corchorus olitorius HOM05D004585 ORTHO05D005640 3.8e-77 292.0 172 81.4
AT5G04600 Arabidopsis thaliana HOM05D004585 ORTHO05D005640 6.6e-77 291.2 221 65.6
CDE04G0123 Ceratophyllum demersum HOM05D004585 ORTHO05D005640 8.6e-77 290.8 216 67.1
SGA_v2.0_scaffold154G37190 Striga asiatica HOM05D004585 ORTHO05D005640 3.3e-76 288.9 216 67.6
Solyc06g074720.4 Solanum lycopersicum HOM05D004585 ORTHO05D005640 7.3e-76 287.7 202 73.3
CDE02G2408 Ceratophyllum demersum HOM05D000251 ORTHO05D002506 1.6e-75 286.6 216 66.7
Hund06922 Selenicereus undatus HOM05D004585 ORTHO05D005640 2.8e-75 285.8 206 68.9
Migut.F01706 Erythranthe guttata HOM05D004585 ORTHO05D005640 4.7e-75 285.0 218 67.4
Nitab4.5_0003470g0110 Nicotiana tabacum HOM05D004585 ORTHO05D005640 6.1e-75 284.6 202 72.8
PSO210G0756 Papaver somniferum HOM05D004585 ORTHO05D005640 8.0e-75 284.3 204 71.1
Hund13887 Selenicereus undatus HOM05D004585 ORTHO05D005640 4.0e-74 282.0 209 65.1
Ah.16g102420 Amaranthus hybridus HOM05D004585 ORTHO05D005640 4.4e-73 278.5 186 72.0
Ah.03g136890 Amaranthus hybridus HOM05D004585 ORTHO05D005640 5.7e-73 278.1 185 71.4
FvH4_5g27351 Fragaria vesca HOM05D004585 ORTHO05D005640 5.7e-73 278.1 223 66.4
FAN26G1691 Fragaria x ananassa HOM05D004585 ORTHO05D005640 1.1e-71 273.9 223 66.8
ATR0068G115 Amborella trichopoda HOM05D004585 ORTHO05D005640 1.8e-71 273.1 219 61.2
SalBow6G2458 Salvia bowleyana HOM05D004585 ORTHO05D005640 7.0e-71 271.2 249 58.2
EL10Ac2g03709 Beta vulgaris HOM05D004585 ORTHO05D005640 1.3e-69 266.9 183 69.9
AUR62003699 Chenopodium quinoa HOM05D004585 ORTHO05D005640 2.3e-69 266.2 187 68.4
FAN13G1680 Fragaria x ananassa HOM05D005925 ORTHO05D007270 7.3e-68 261.2 256 57.8
FAN18G1621 Fragaria x ananassa HOM05D005925 ORTHO05D007270 7.3e-68 261.2 256 57.8
CSS0012030 Camellia sinensis var. sinensis HOM05D004585 ORTHO05D005640 2.8e-67 259.2 220 63.6
Os08g0412200 Oryza sativa ssp. japonica HOM05D004585 ORTHO05D005640 6.2e-67 258.1 217 59.4
Medtr4g127330 Medicago truncatula HOM05D004585 ORTHO05D005640 2.0e-65 253.1 182 70.3
EL10Ac4g08678 Beta vulgaris HOM05D004585 ORTHO05D005640 4.4e-65 251.9 171 70.8
HPP92_008213 Vanilla planifolia HOM05D004585 ORTHO05D005640 5.8e-65 251.5 215 58.6
EL10Ac4g08675 Beta vulgaris HOM05D004585 ORTHO05D005640 3.7e-64 248.8 174 69.5
COL.COLO4_27310 Corchorus olitorius HOM05D004585 ORTHO05D005640 2.4e-63 246.1 146 78.8
Ciclev10033004m.g Citrus clementina HOM05D004585 ORTHO05D005640 1.3e-61 240.4 145 78.6
Zm00001eb178930 Zea mays HOM05D004585 ORTHO05D005640 1.2e-54 217.2 197 58.9
Lj9A82T44 Lonicera japonica HOM05D004585 ORTHO05D005640 1.7e-53 213.4 150 72.0
DCAR_012470 Daucus carota HOM05D004585 ORTHO05D005640 6.6e-53 211.5 145 72.4
BolC2t06157H Brassica oleracea HOM05D004585 ORTHO05D005640 4.7e-51 205.3 170 62.4
TPR.G31410 Trifolium pratense HOM05D004585 ORTHO05D005640 2.6e-49 199.5 139 71.9
Pp3c3_32540 Physcomitrium patens HOM05D004585 ORTHO05D005640 1.2e-46 190.7 197 48.2
Oeu046197.1 Olea europaea HOM05D004585 ORTHO05D005640 6.0e-46 188.3 142 62.0
Pp3c8_3240 Physcomitrium patens HOM05D004585 ORTHO05D005640 6.0e-46 188.3 215 45.1
Lj6g0027575 Lotus japonicus HOM05D004585 ORTHO05D005640 1.2e-43 180.6 124 71.8
Mapoly0059s0023 Marchantia polymorpha HOM05D004585 ORTHO05D005640 6.2e-43 178.3 164 51.8
AUR62018007 Chenopodium quinoa HOM05D004585 ORTHO05D005640 8.9e-42 174.5 125 68.8
AagrBONN_evm.TU.Sc2ySwM_228.827 Anthoceros agrestis HOM05D004585 ORTHO05D005640 7.6e-41 171.4 143 58.0
DCAR_001331 Daucus carota HOM05D004585 ORTHO05D005640 1.7e-40 170.2 145 62.8
SMO117G0347 Selaginella moellendorffii HOM05D004585 ORTHO05D005640 5.1e-37 158.7 213 40.8
Aqoxy1G00240 Aquilegia oxysepala HOM05D004585 ORTHO05D005640 6.6e-37 158.3 107 70.1
Cre08.g368500 Chlamydomonas reinhardtii HOM05D004585 ORTHO05D005640 3.3e-36 156.0 178 43.3
CBR_g11154 Chara braunii HOM05D004585 ORTHO05D005640 1.1e-34 151.0 205 40.0
MCO05G308 Micromonas commoda HOM05D004585 ORTHO05D005640 9.0e-34 147.9 148 46.6
PRCOL_00003387 Prasinoderma coloniale HOM05D004585 ORTHO05D005640 2.4e-31 139.8 155 42.6
unitig_26.g9455 Utricularia gibba HOM05D004585 ORTHO05D005640 2.7e-30 136.3 218 40.4
Cfa021710 Carpinus fangiana HOM05D004585 ORTHO05D005640 2.8e-27 126.3 181 39.2
TPR.G32073 Trifolium pratense HOM05D004585 ORTHO05D005640 2.0e-25 120.2 75 72.0
BcaC06g32170 Brassica carinata HOM05D004585 ORTHO05D005640 2.1e-22 110.2 77 64.9
Haze_26093 Corylus avellana HOM05D004585 ORTHO05D005640 2.7e-22 109.8 153 39.9
Oeu060262.1 Olea europaea HOM05D004585 ORTHO05D005640 6.0e-22 108.6 91 63.7
MD15G1436900 Malus domestica HOM05D004585 ORTHO05D005640 1.8e-18 97.1 77 63.6
COL.COLO4_14104 Corchorus olitorius HOM05D004585 ORTHO05D005736 4.0e-18 95.9 75 62.7
MD15G1437100 Malus domestica HOM05D004585 ORTHO05D005640 4.0e-18 95.9 78 65.4
COL.COLO4_17533 Corchorus olitorius HOM05D001240 ORTHO05D002450 7.6e-17 91.7 49 81.6
EL10Ac7g17659 Beta vulgaris HOM05D004585 ORTHO05D005640 5.5e-15 85.5 69 59.4
Glyma.09G232800 Glycine max HOM05D004585 ORTHO05D005640 9.3e-15 84.7 87 56.3
MD15G1437000 Malus domestica HOM05D004585 ORTHO05D005640 9.3e-15 84.7 49 79.6
Oeu053518.1 Olea europaea HOM05D004585 ORTHO05D005640 7.9e-14 81.6 48 72.9
BcaB01g05909 Brassica carinata HOM05D004585 ORTHO05D005640 1.1e-12 77.8 58 58.6
EL10Ac2g02998 Beta vulgaris HOM05D000461 ORTHO05D005640 3.4e-09 66.2 55 61.8
SalBow3G2087 Salvia bowleyana HOM05D004585 ORTHO05D005640 2.2e-08 63.5 44 63.6
vmacro07224 Vaccinium macrocarpon HOM05D004585 ORTHO05D037280 5.0e-08 62.4 44 68.2
PSO478G2622 Papaver somniferum HOM05D004585 ORTHO05D037280 2.5e-07 60.1 33 81.8
Psat1g082200 Pisum sativum HOM05D004585 ORTHO05D005640 3.2e-07 59.7 48 56.2
Lsat_1_v5_gn_8_8220 Lactuca sativa HOM05D001543 ORTHO05D001722 7.2e-07 58.5 67 43.3
PSO447G0101 Papaver somniferum HOM05D004585 ORTHO05D037280 1.6e-06 57.4 33 78.8
THA.LOC104815287 Tarenaya hassleriana HOM05D005326 ORTHO05D006734 4.6e-06 55.8 142 27.5
CAN.G530.9 Capsicum annuum HOM05D000115 ORTHO05D000645 6.1e-06 55.5 38 65.8
CSS0040420 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 7.9e-06 55.1 91 30.8


User provided reference genes

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