Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_01626 Corylus avellana HOM05D004799 ORTHO05D005500 4.0e-120 434.9 235 100.0
Cfa005544 Carpinus fangiana HOM05D004799 ORTHO05D005500 1.4e-112 409.8 235 95.7
CiPaw.06G148900 Carya illinoinensis HOM05D004799 ORTHO05D005500 9.6e-90 334.0 240 78.8
QL02p098623 Quercus lobata HOM05D004799 ORTHO05D005500 2.2e-86 322.8 268 73.1
GSVIVG01023017001 Vitis vinifera HOM05D004799 ORTHO05D005500 7.1e-85 317.8 233 75.1
CiPaw.05G042800 Carya illinoinensis HOM05D004799 ORTHO05D005500 6.2e-81 304.7 279 66.7
Duzib248G0546 Durio zibethinus HOM05D004799 ORTHO05D005500 8.1e-81 304.3 228 73.7
MD08G1225100 Malus domestica HOM05D004799 ORTHO05D005500 1.7e-78 296.6 236 73.7
Duzib132G0636 Durio zibethinus HOM05D004799 ORTHO05D005500 1.9e-77 293.1 230 71.3
MD15G1418700 Malus domestica HOM05D004799 ORTHO05D005500 1.6e-76 290.0 235 73.2
Manes.10G132000 Manihot esculenta HOM05D004799 ORTHO05D005500 1.0e-75 287.3 226 72.1
Cpa.g.sc2.26 Carica papaya HOM05D004799 ORTHO05D005500 1.3e-75 287.0 238 68.5
Gohir.A03G210900 Gossypium hirsutum HOM05D004799 ORTHO05D005500 1.3e-75 287.0 235 68.5
Dinv19352 Davidia involucrata HOM05D004799 ORTHO05D005500 1.8e-75 286.6 236 70.3
Gohir.A01G177000 Gossypium hirsutum HOM05D004799 ORTHO05D005500 1.8e-75 286.6 235 70.2
Sabra01G0161300 Salix brachista HOM05D004799 ORTHO05D005500 3.0e-75 285.8 255 66.7
Gorai.002G208500 Gossypium raimondii HOM05D004799 ORTHO05D005500 1.1e-74 283.9 235 69.8
Gohir.D01G167800 Gossypium hirsutum HOM05D004799 ORTHO05D005500 1.9e-74 283.1 235 69.8
FAN04G2475 Fragaria x ananassa HOM05D004799 ORTHO05D005500 9.6e-74 280.8 227 69.6
FAN13G3307 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.3e-73 280.4 226 70.4
Ciclev10002345m.g Citrus clementina HOM05D004799 ORTHO05D005500 3.7e-73 278.9 235 68.9
Potri.001G209100 Populus trichocarpa HOM05D004799 ORTHO05D005500 4.8e-73 278.5 225 70.7
FvH4_5g30080 Fragaria vesca HOM05D004799 ORTHO05D005500 6.3e-73 278.1 226 69.9
Eucgr.I02711 Eucalyptus grandis HOM05D004799 ORTHO05D005500 9.0e-72 274.2 227 68.7
RcHm_v2.0_Chr7g0224271 Rosa chinensis HOM05D004799 ORTHO05D005500 9.0e-72 274.2 226 69.9
PGSC0003DMG400023776 Solanum tuberosum HOM05D004799 ORTHO05D005500 1.2e-71 273.9 226 69.5
Sopen01g046960 Solanum pennellii HOM05D004799 ORTHO05D005500 2.6e-71 272.7 226 69.0
Hma1.2p1_0217F.1_g091930 Hydrangea macrophylla HOM05D004799 ORTHO05D005500 4.5e-71 271.9 236 68.6
FAN18G4597 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.3e-70 270.4 235 67.2
Manes.07G013800 Manihot esculenta HOM05D004799 ORTHO05D005500 6.5e-70 268.1 238 68.5
Cc02_g22290 Coffea canephora HOM05D004799 ORTHO05D005500 8.4e-70 267.7 225 68.9
Sabra03G0013400 Salix brachista HOM05D004799 ORTHO05D005500 2.5e-69 266.2 223 66.8
Lj5A248T74 Lonicera japonica HOM05D004799 ORTHO05D005500 4.2e-69 265.4 238 68.1
Lalb_Chr07g0185691 Lupinus albus HOM05D004799 ORTHO05D005500 4.2e-69 265.4 228 64.9
Lalb_Chr12g0204381 Lupinus albus HOM05D004799 ORTHO05D005500 5.5e-69 265.0 229 65.9
Gohir.D02G232500 Gossypium hirsutum HOM05D004799 ORTHO05D005500 7.2e-69 264.6 235 66.0
Gorai.005G260300 Gossypium raimondii HOM05D004799 ORTHO05D005500 1.6e-68 263.5 235 65.5
Thecc.02G041200 Theobroma cacao HOM05D004799 ORTHO05D005500 7.9e-68 261.2 235 64.7
Potri.003G021500 Populus trichocarpa HOM05D004799 ORTHO05D005500 1.8e-67 260.0 219 67.1
Peaxi162Scf00011g00139 Petunia axillaris HOM05D004799 ORTHO05D005500 6.7e-67 258.1 228 67.1
Dinv24262 Davidia involucrata HOM05D004799 ORTHO05D005500 2.5e-66 256.1 229 65.9
MSTRG.27841 Avicennia marina HOM05D004799 ORTHO05D005500 1.3e-65 253.8 230 63.9
TAR628G0692 Trochodendron aralioides HOM05D004799 ORTHO05D005500 1.3e-65 253.8 234 64.1
TAR376G0767 Trochodendron aralioides HOM05D004799 ORTHO05D005500 1.6e-65 253.4 239 64.4
vmacro01776 Vaccinium macrocarpon HOM05D004799 ORTHO05D005500 1.6e-65 253.4 263 58.9
arahy.Tifrunner.gnm1.ann1.ZS42GJ Arachis hypogaea HOM05D004799 ORTHO05D005500 4.8e-65 251.9 218 65.6
arahy.Tifrunner.gnm1.ann1.BG3XJE Arachis hypogaea HOM05D004799 ORTHO05D005500 3.1e-64 249.2 216 65.7
THA.LOC104809537 Tarenaya hassleriana HOM05D004799 ORTHO05D005500 6.9e-64 248.1 237 62.4
CANSAT11G1940 Cannabis sativa HOM05D004799 ORTHO05D005500 2.6e-63 246.1 239 60.3
TWI59G1038 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 2.6e-63 246.1 220 65.0
Migut.B00668 Erythranthe guttata HOM05D004799 ORTHO05D005500 3.4e-63 245.7 232 60.3
Atru.chr6.1081 Acer truncatum HOM05D004799 ORTHO05D005500 1.3e-62 243.8 202 69.8
Carub.0001s1103 Capsella rubella HOM05D004799 ORTHO05D005500 1.7e-62 243.4 237 63.7
Oeu008877.2 Olea europaea HOM05D004799 ORTHO05D005500 1.7e-62 243.4 258 57.4
Lj6g0003329 Lotus japonicus HOM05D004799 ORTHO05D005500 6.5e-62 241.5 208 64.9
CAN.G1352.25 Capsicum annuum HOM05D004799 ORTHO05D005500 1.1e-61 240.7 225 63.1
Oeu012743.2 Olea europaea HOM05D004799 ORTHO05D005500 1.6e-60 236.9 244 58.2
FAN08G0327 Fragaria x ananassa HOM05D004799 ORTHO05D005500 3.6e-60 235.7 226 61.9
Nitab4.5_0010140g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 6.1e-60 235.0 224 63.4
Sc14g0006850 Simmondsia chinensis HOM05D004799 ORTHO05D005500 6.1e-60 235.0 230 61.7
CsaV3_7G007080 Cucumis sativus L. HOM05D004799 ORTHO05D005500 1.0e-59 234.2 232 60.3
Medtr2g007770 Medicago truncatula HOM05D004799 ORTHO05D005500 1.8e-59 233.4 213 62.9
TPR.G2141 Trifolium pratense HOM05D004799 ORTHO05D005500 2.3e-59 233.0 219 59.4
MELO3C018586.2 Cucumis melo HOM05D004799 ORTHO05D005500 3.0e-59 232.6 233 60.9
Lsat_1_v5_gn_9_116381 Lactuca sativa HOM05D004799 ORTHO05D005500 1.5e-58 230.3 231 61.5
Aa31LG1G3310 Aethionema arabicum HOM05D004799 ORTHO05D005500 2.0e-58 229.9 237 59.5
ClCG09G016220 Citrullus lanatus HOM05D004799 ORTHO05D005500 3.3e-58 229.2 228 61.8
Hund19012 Selenicereus undatus HOM05D004799 ORTHO05D005500 5.7e-58 228.4 238 58.4
Rhsim11G0131600 Rhododendron simsii HOM05D004799 ORTHO05D005500 1.3e-57 227.3 330 46.7
AUR62018552 Chenopodium quinoa HOM05D004799 ORTHO05D005500 2.8e-57 226.1 237 58.2
DCAR_005625 Daucus carota HOM05D004799 ORTHO05D005500 8.2e-57 224.6 218 60.1
Psat1g220000 Pisum sativum HOM05D004799 ORTHO05D005500 8.2e-57 224.6 220 60.9
BraA08t35264Z Brassica rapa HOM05D004799 ORTHO05D005500 1.1e-56 224.2 231 58.9
Sp1g10030 Schrenkiella parvula HOM05D004799 ORTHO05D005500 1.1e-56 224.2 231 58.4
CSS0024882 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 1.8e-56 223.4 189 67.7
CsaV3_5G024750 Cucumis sativus L. HOM05D004799 ORTHO05D005500 1.8e-56 223.4 237 58.6
AUR62020867 Chenopodium quinoa HOM05D004799 ORTHO05D005500 2.4e-56 223.0 235 56.2
A08p33480 Brassica napus HOM05D004799 ORTHO05D005500 4.1e-56 222.2 231 58.4
CSS0037217 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 4.1e-56 222.2 187 69.0
HanXRQChr03g0066881 Helianthus annuus HOM05D004799 ORTHO05D005500 9.1e-56 221.1 235 57.0
EL10Ac3g07450 Beta vulgaris HOM05D004799 ORTHO05D005500 1.5e-55 220.3 226 58.0
TWI23G0644 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 3.4e-55 219.2 238 56.7
Actinidia00218 Actinidia chinensis HOM05D004799 ORTHO05D005500 4.5e-55 218.8 237 58.2
Glyma.08G128300 Glycine max HOM05D004799 ORTHO05D005500 5.9e-55 218.4 223 61.0
SGA_v2.0_scaffold110G31288 Striga asiatica HOM05D004799 ORTHO05D005500 7.7e-55 218.0 234 55.1
C08p14470 Brassica napus HOM05D004799 ORTHO05D005500 1.3e-54 217.2 231 57.1
VMungo0251G3647 Vigna mungo HOM05D004799 ORTHO05D005500 1.7e-54 216.9 223 60.5
Ah.04g149450 Amaranthus hybridus HOM05D004799 ORTHO05D005500 2.2e-54 216.5 233 58.4
BcaB03g13259 Brassica carinata HOM05D004799 ORTHO05D005500 1.1e-53 214.2 232 56.9
AL1G22490 Arabidopsis lyrata HOM05D004799 ORTHO05D005500 1.4e-53 213.8 229 58.5
BcaC07g38663 Brassica carinata HOM05D004799 ORTHO05D005500 1.4e-53 213.8 231 56.3
BolC8t49096H Brassica oleracea HOM05D004799 ORTHO05D005500 1.4e-53 213.8 231 56.3
ATR0684G092 Amborella trichopoda HOM05D004799 ORTHO05D005500 1.9e-53 213.4 222 57.7
Actinidia39055 Actinidia chinensis HOM05D004799 ORTHO05D005500 3.2e-53 212.6 191 65.4
CARHR011640 Cardamine hirsuta HOM05D004799 ORTHO05D005500 3.2e-53 212.6 235 57.0
Nitab4.5_0005539g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 5.5e-53 211.8 224 58.5
Aqoxy6G00151 Aquilegia oxysepala HOM05D004799 ORTHO05D005500 2.7e-52 209.5 228 58.8
COL.COLO4_17895 Corchorus olitorius HOM05D004799 ORTHO05D005500 3.6e-52 209.1 233 57.1
Sed0004816 Sechium edule HOM05D004799 ORTHO05D005500 1.8e-51 206.8 234 55.1
BcaC05g25015 Brassica carinata HOM05D004799 ORTHO05D005500 2.0e-50 203.4 233 55.8
C05p09620 Brassica napus HOM05D004799 ORTHO05D005500 2.0e-50 203.4 233 55.8
BolC5t29704H Brassica oleracea HOM05D004799 ORTHO05D005500 2.0e-50 203.4 233 55.8
Ca_00089_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 3.3e-50 202.6 267 49.4
Ca_29928_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 3.3e-50 202.6 267 49.4
unitig_26.g9556 Utricularia gibba HOM05D004799 ORTHO05D005500 9.7e-50 201.1 216 56.0
Glyma.05G170200 Glycine max HOM05D004799 ORTHO05D005500 1.7e-49 200.3 227 55.9
A06p08020 Brassica napus HOM05D004799 ORTHO05D005500 2.2e-49 199.9 233 54.1
BraA06t24001Z Brassica rapa HOM05D004799 ORTHO05D005500 2.2e-49 199.9 233 54.1
AT1G11400 Arabidopsis thaliana HOM05D004799 ORTHO05D005500 3.1e-48 196.1 222 55.9
Lsat_1_v5_gn_7_77960 Lactuca sativa HOM05D004799 ORTHO05D005500 1.2e-47 194.1 230 55.7
Thhalv10008698m.g Eutrema salsugineum HOM05D004799 ORTHO05D005500 5.9e-47 191.8 231 52.8
Phvul.002G251000 Phaseolus vulgaris HOM05D004799 ORTHO05D005500 2.2e-46 189.9 220 55.5
Prupe.1G562800 Prunus persica HOM05D004799 ORTHO05D005500 5.0e-46 188.7 166 69.9
HPP92_019221 Vanilla planifolia HOM05D004799 ORTHO05D005500 4.2e-45 185.7 216 55.1
PSO528G0257 Papaver somniferum HOM05D004799 ORTHO05D005500 1.6e-44 183.7 215 54.0
Os03g0262100 Oryza sativa ssp. japonica HOM05D004799 ORTHO05D005500 4.0e-43 179.1 236 50.0
Nn5g28066 Nelumbo nucifera HOM05D004799 ORTHO05D005500 2.6e-42 176.4 184 59.2
Zm00001eb011470 Zea mays HOM05D004799 ORTHO05D005500 9.7e-42 174.5 212 53.3
SalBow6G1776 Salvia bowleyana HOM05D004799 ORTHO05D005500 3.7e-41 172.6 222 51.8
SalBow6G5744 Salvia bowleyana HOM05D004799 ORTHO05D005500 3.7e-41 172.6 222 51.8
CDE02G4357 Ceratophyllum demersum HOM05D004799 ORTHO05D005500 7.0e-40 168.3 227 48.9
MBI03_g11149_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 8.5e-38 161.4 313 42.8
Nn1g08619 Nelumbo nucifera HOM05D004799 ORTHO05D005500 1.5e-37 160.6 168 58.3
PSO170G0171 Papaver somniferum HOM05D004799 ORTHO05D005500 1.9e-37 160.2 218 50.0
ECA240G2283 Erigeron canadensis HOM05D004799 ORTHO05D005500 3.2e-37 159.5 219 47.0
MSTRG.16532 Avicennia marina HOM05D004799 ORTHO05D005500 1.1e-32 144.4 158 55.7
Atru.chr6.1045 Acer truncatum HOM05D004799 ORTHO05D005500 1.0e-30 137.9 131 62.6
HPP92_009361 Vanilla planifolia HOM05D004799 ORTHO05D005500 4.2e-29 132.5 216 46.8
Glyma.14G170300 Glycine max HOM05D004799 ORTHO05D005500 3.6e-28 129.4 152 56.6
SEGI_10500 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 1.0e-27 127.9 96 71.9
Lj9C308T7 Lonicera japonica HOM05D004799 ORTHO05D005500 1.8e-27 127.1 146 55.5
Mapoly0065s0027 Marchantia polymorpha HOM05D004799 ORTHO05D005500 7.5e-26 121.7 209 42.1
Zm00001eb398170 Zea mays HOM05D004799 ORTHO05D005500 2.8e-20 103.2 163 46.6
CBR_g22015 Chara braunii HOM05D004799 ORTHO05D005500 3.6e-20 102.8 256 35.9
MBI03_g11127_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 1.0e-19 101.3 131 56.5
Ah.13g077920 Amaranthus hybridus HOM05D004799 ORTHO05D005500 1.4e-19 100.9 225 37.3
GSVIVG01013911001 Vitis vinifera HOM05D004799 ORTHO05D005500 1.5e-18 97.4 91 60.4
arahy.Tifrunner.gnm1.ann1.DUW5WJ Arachis hypogaea HOM05D004799 ORTHO05D005500 2.7e-15 86.7 79 67.1
AagrBONN_evm.TU.Sc2ySwM_344.2060 Anthoceros agrestis HOM05D004799 ORTHO05D005500 3.5e-15 86.3 73 61.6
Lj5A253T37 Lonicera japonica HOM05D012292 ORTHO05D012234 6.8e-11 72.0 236 33.9
SEGI_00858 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 9.8e-10 68.2 122 41.0
A09p63310 Brassica napus HOM05D004799 ORTHO05D005500 1.3e-09 67.8 53 66.0
BraA09t41682Z Brassica rapa HOM05D004799 ORTHO05D005500 1.3e-09 67.8 53 66.0
CSS0012117 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 1.3e-09 67.8 45 73.3
CSS0018254 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 2.9e-09 66.6 45 73.3
SMO367G0479 Selaginella moellendorffii HOM05D004799 ORTHO05D005500 2.9e-09 66.6 39 82.1
BcaB03g13258 Brassica carinata HOM05D004799 ORTHO05D005500 8.3e-09 65.1 91 47.3
Pp3c4_27250 Physcomitrium patens HOM05D004799 ORTHO05D005500 1.2e-07 61.2 148 35.1
Lj5A252G43 Lonicera japonica HOM05D012292 ORTHO05D012234 6.0e-07 58.9 98 42.9


User provided reference genes

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