Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_01142 Corylus avellana HOM05D004772 ORTHO05D006892 0.0e+00 1212.6 637 100.0
Haze_01138 Corylus avellana HOM05D004772 ORTHO05D006892 0.0e+00 1207.6 637 99.7
Cfa015449 Carpinus fangiana HOM05D004772 ORTHO05D006892 0.0e+00 1076.2 663 87.9
CiPaw.02G079000 Carya illinoinensis HOM05D004772 ORTHO05D006892 1.7e-274 949.1 662 78.2
QL06p010892 Quercus lobata HOM05D004772 ORTHO05D006892 6.8e-247 857.4 664 74.4
GSVIVG01035090001 Vitis vinifera HOM05D004772 ORTHO05D006892 1.2e-232 810.1 669 69.2
TWI09G0846 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 1.0e-231 807.0 668 66.5
TWI73G1272 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 3.4e-230 802.0 668 67.1
Thecc.04G291000 Theobroma cacao HOM05D004772 ORTHO05D006892 9.8e-230 800.4 668 67.7
TAR362G0678 Trochodendron aralioides HOM05D004772 ORTHO05D006892 3.3e-225 785.4 602 71.1
Dinv29709 Davidia involucrata HOM05D004772 ORTHO05D006892 7.3e-225 784.3 674 66.5
Prupe.1G129500 Prunus persica HOM05D004772 ORTHO05D006892 9.5e-225 783.9 664 66.9
Gohir.D09G062400 Gossypium hirsutum HOM05D004772 ORTHO05D006892 6.2e-224 781.2 691 65.3
Gorai.006G077200 Gossypium raimondii HOM05D004772 ORTHO05D006892 8.0e-224 780.8 691 65.1
Gohir.A09G063500 Gossypium hirsutum HOM05D004772 ORTHO05D006892 1.4e-223 780.0 691 65.3
MD13G1162200 Malus domestica HOM05D004772 ORTHO05D006892 3.1e-223 778.9 664 66.7
PGR004G0606 Punica granatum HOM05D004772 ORTHO05D006892 3.2e-220 768.8 668 65.3
Actinidia18636 Actinidia chinensis HOM05D004772 ORTHO05D006892 1.2e-219 766.9 666 65.2
Glyma.17G029600 Glycine max HOM05D004772 ORTHO05D006892 1.0e-218 763.8 617 67.3
Hma1.2p1_0078F.1_g040280 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 3.9e-218 761.9 664 65.2
Cpa.g.sc9.115 Carica papaya HOM05D004772 ORTHO05D006892 1.1e-217 760.4 666 65.0
Potri.010G005600 Populus trichocarpa HOM05D004772 ORTHO05D006892 4.3e-217 758.4 663 65.0
Glyma.07G244300 Glycine max HOM05D004772 ORTHO05D006892 5.6e-217 758.1 662 65.0
MD16G1162000 Malus domestica HOM05D004772 ORTHO05D006892 7.3e-217 757.7 661 64.4
Medtr4g120470 Medicago truncatula HOM05D004772 ORTHO05D006892 3.6e-216 755.4 628 66.1
Potri.008G211400 Populus trichocarpa HOM05D004772 ORTHO05D006892 6.2e-216 754.6 665 64.7
Ca_21472_v3 Cicer arietinum L. HOM05D004772 ORTHO05D006892 8.1e-216 754.2 660 64.2
Lj4g0015807 Lotus japonicus HOM05D004772 ORTHO05D006892 2.3e-215 752.7 665 63.3
Nn3g21575 Nelumbo nucifera HOM05D004772 ORTHO05D006892 2.0e-214 749.6 674 63.9
TPR.G22770 Trifolium pratense HOM05D004772 ORTHO05D006892 3.4e-214 748.8 589 68.1
Lalb_Chr13g0298261 Lupinus albus HOM05D004772 ORTHO05D006892 1.3e-213 746.9 584 68.8
Sed0023608 Sechium edule HOM05D004772 ORTHO05D006892 1.1e-212 743.8 664 62.8
VMungo1215G3292 Vigna mungo HOM05D004772 ORTHO05D006892 1.4e-212 743.4 663 63.2
CANSAT78G1075 Cannabis sativa HOM05D004772 ORTHO05D006892 7.1e-212 741.1 682 62.5
RcHm_v2.0_Chr4g0423801 Rosa chinensis HOM05D004772 ORTHO05D006892 1.6e-211 740.0 675 62.7
Eucgr.E01101 Eucalyptus grandis HOM05D004772 ORTHO05D006892 4.6e-211 738.4 648 63.1
Sabra10G0004800 Salix brachista HOM05D004772 ORTHO05D006892 4.6e-211 738.4 698 61.5
CsaV3_6G022660 Cucumis sativus L. HOM05D004772 ORTHO05D006892 1.3e-210 736.9 667 62.2
Phvul.003G108600 Phaseolus vulgaris HOM05D004772 ORTHO05D006892 5.6e-209 731.5 662 62.7
PSO731G0023 Papaver somniferum HOM05D004772 ORTHO05D006892 1.1e-207 727.2 605 65.5
MELO3C021296.2 Cucumis melo HOM05D004772 ORTHO05D006892 5.2e-207 724.9 667 61.6
DCAR_027042 Daucus carota HOM05D004772 ORTHO05D006892 6.8e-207 724.5 650 63.1
PSO764G0237 Papaver somniferum HOM05D004772 ORTHO05D006892 8.9e-207 724.2 605 65.1
ClCG06G004870 Citrullus lanatus HOM05D004772 ORTHO05D006892 2.6e-206 722.6 693 60.8
FvH4_4g18900 Fragaria vesca HOM05D004772 ORTHO05D006892 2.6e-206 722.6 673 61.5
FAN07G2363 Fragaria x ananassa HOM05D004772 ORTHO05D006892 4.6e-203 711.8 694 59.8
FAN12G2191 Fragaria x ananassa HOM05D004772 ORTHO05D006892 7.8e-203 711.1 692 59.8
FAN12G3151 Fragaria x ananassa HOM05D004772 ORTHO05D006892 1.7e-202 709.9 692 59.8
Rhsim04G0228200 Rhododendron simsii HOM05D004772 ORTHO05D006892 9.6e-201 704.1 673 61.8
Lj6A683G52 Lonicera japonica HOM05D004772 ORTHO05D006892 1.6e-200 703.4 675 59.9
COL.COLO4_34697 Corchorus olitorius HOM05D004772 ORTHO05D006892 2.8e-200 702.6 646 63.3
arahy.Tifrunner.gnm1.ann1.0U01EG Arachis hypogaea HOM05D004772 ORTHO05D006892 6.2e-200 701.4 648 61.4
ECA240G4356 Erigeron canadensis HOM05D004772 ORTHO05D006892 1.4e-199 700.3 630 60.8
Aqoxy5G00804 Aquilegia oxysepala HOM05D004772 ORTHO05D006892 3.1e-199 699.1 677 60.9
Cc03_g01340 Coffea canephora HOM05D004772 ORTHO05D006892 3.4e-198 695.7 654 60.2
Lsat_1_v5_gn_6_76160 Lactuca sativa HOM05D004772 ORTHO05D006892 4.4e-198 695.3 669 59.5
Manes.03G200000 Manihot esculenta HOM05D004772 ORTHO05D006892 4.4e-198 695.3 669 60.4
Thhalv10020259m.g Eutrema salsugineum HOM05D004772 ORTHO05D006892 7.6e-198 694.5 649 60.2
MSTRG.24809 Avicennia marina HOM05D004772 ORTHO05D006892 1.2e-195 687.2 658 59.3
THA.LOC104802592 Tarenaya hassleriana HOM05D004772 ORTHO05D006892 2.1e-195 686.4 667 59.2
HanXRQChr03g0085471 Helianthus annuus HOM05D004772 ORTHO05D006892 3.0e-194 682.6 581 62.7
Sp3g15060 Schrenkiella parvula HOM05D004772 ORTHO05D006892 9.6e-193 677.6 669 58.3
Sc19g0003370 Simmondsia chinensis HOM05D004772 ORTHO05D006892 1.6e-192 676.8 662 57.6
Ciclev10004585m.g Citrus clementina HOM05D004772 ORTHO05D006892 1.8e-191 673.3 674 60.2
SGA_v2.0_scaffold119G32697 Striga asiatica HOM05D004772 ORTHO05D006892 4.0e-191 672.2 657 58.1
Duzib151G1106 Durio zibethinus HOM05D004772 ORTHO05D006892 9.0e-191 671.0 677 58.8
Aa31LG8G3880 Aethionema arabicum HOM05D004772 ORTHO05D006892 4.9e-189 665.2 667 56.7
BcaB06g25777 Brassica carinata HOM05D004772 ORTHO05D006892 4.2e-188 662.1 653 58.7
Hund11943 Selenicereus undatus HOM05D004772 ORTHO05D006892 5.4e-188 661.8 646 57.7
Solyc01g065580.4 Solanum lycopersicum HOM05D004772 ORTHO05D006892 1.2e-187 660.6 642 58.9
Carub.0003s1652 Capsella rubella HOM05D004772 ORTHO05D006892 2.1e-187 659.8 653 57.1
BolC5t33706H Brassica oleracea HOM05D004772 ORTHO05D006892 7.9e-187 657.9 654 57.8
Sopen01g026980 Solanum pennellii HOM05D004772 ORTHO05D006892 1.0e-186 657.5 642 58.7
CAN.G14.7 Capsicum annuum HOM05D004772 ORTHO05D006892 1.3e-186 657.1 593 61.6
C05p49530 Brassica napus HOM05D004772 ORTHO05D006892 1.8e-186 656.8 654 57.8
BcaC05g28847 Brassica carinata HOM05D004772 ORTHO05D006892 8.7e-186 654.4 654 57.6
Nitab4.5_0007304g0010 Nicotiana tabacum HOM05D004772 ORTHO05D006892 1.9e-185 653.3 655 58.8
A05p32820 Brassica napus HOM05D004772 ORTHO05D006892 3.3e-185 652.5 635 56.9
Migut.N00065 Erythranthe guttata HOM05D004772 ORTHO05D006892 7.4e-185 651.4 658 56.5
AL3G29730 Arabidopsis lyrata HOM05D004772 ORTHO05D006892 1.4e-183 647.1 649 56.9
AUR62016163 Chenopodium quinoa HOM05D004772 ORTHO05D006892 1.5e-182 643.7 650 58.0
BraA05t22104Z Brassica rapa HOM05D004772 ORTHO05D006892 2.6e-182 642.9 657 55.7
PGSC0003DMG400001190 Solanum tuberosum HOM05D004772 ORTHO05D006892 4.5e-182 642.1 642 57.3
AT3G16810 Arabidopsis thaliana HOM05D004772 ORTHO05D006892 1.0e-181 641.0 648 56.0
Psat4g024680 Pisum sativum HOM05D004772 ORTHO05D006892 1.3e-181 640.6 640 59.1
Oeu054008.1 Olea europaea HOM05D004772 ORTHO05D006892 2.7e-179 632.9 546 62.6
CSS0008369 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 2.3e-178 629.8 617 59.8
ATR0693G185 Amborella trichopoda HOM05D004772 ORTHO05D006892 5.1e-178 628.6 580 59.3
Peaxi162Scf00065g01018 Petunia axillaris HOM05D004772 ORTHO05D006892 8.7e-178 627.9 655 56.6
AUR62035077 Chenopodium quinoa HOM05D004772 ORTHO05D006892 5.3e-175 618.6 674 55.2
CSS0024712 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 1.9e-172 610.1 613 59.1
vmacro08098 Vaccinium macrocarpon HOM05D004772 ORTHO05D006892 3.3e-169 599.4 608 60.5
SalBow5G3355 Salvia bowleyana HOM05D004772 ORTHO05D006892 1.6e-168 597.0 668 53.3
Atru.chr4.2923 Acer truncatum HOM05D004772 ORTHO05D006892 2.2e-168 596.7 643 58.2
MBI18_g04559_MAGBIO Magnolia biondii HOM05D004772 ORTHO05D006892 9.0e-167 591.3 643 56.9
EL10Ac3g04940 Beta vulgaris HOM05D004772 ORTHO05D006892 2.6e-166 589.7 653 53.6
CDE02G0409 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 2.5e-161 573.2 655 52.5
Nitab4.5_0000361g0050 Nicotiana tabacum HOM05D004772 ORTHO05D006892 5.7e-161 572.0 513 60.4
CARHR092060 Cardamine hirsuta HOM05D004772 ORTHO05D006892 1.3e-157 560.8 673 51.3
Os03g0831100 Oryza sativa ssp. japonica HOM05D004772 ORTHO05D006892 6.5e-157 558.5 621 51.2
Hma1.2p1_0078F.1_g040270 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 9.1e-143 511.5 448 66.1
SMO367G0742 Selaginella moellendorffii HOM05D004772 ORTHO05D006892 3.7e-128 463.0 587 45.3
HPP92_010664 Vanilla planifolia HOM05D004772 ORTHO05D006892 8.3e-128 461.8 539 51.4
Pp3c5_10580 Physcomitrium patens HOM05D004772 ORTHO05D006892 5.2e-122 442.6 619 44.7
AagrBONN_evm.TU.Sc2ySwM_344.4680 Anthoceros agrestis HOM05D004772 ORTHO05D006892 1.2e-121 441.4 679 43.4
Mapoly0099s0044 Marchantia polymorpha HOM05D004772 ORTHO05D006892 1.7e-112 411.0 687 40.9
unitig_747.g21102 Utricularia gibba HOM05D004772 ORTHO05D006892 8.3e-112 408.7 649 43.9
CAN.G1132.3 Capsicum annuum HOM05D004772 ORTHO05D006892 9.5e-108 395.2 359 60.7
FAN17G1707 Fragaria x ananassa HOM05D004772 ORTHO05D006892 3.7e-96 356.7 297 64.3
CDE09G1302 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 4.6e-94 349.7 324 58.0
SHI00201 Sapria himalayana HOM05D004772 ORTHO05D006892 4.0e-90 336.7 430 50.7
Oeu006429.1 Olea europaea HOM05D004772 ORTHO05D006892 2.2e-88 330.9 532 42.7
AUR62015585 Chenopodium quinoa HOM05D004772 ORTHO05D006892 1.2e-86 325.1 382 51.8
CBR_g50950 Chara braunii HOM05D004772 ORTHO05D006892 2.7e-86 323.9 642 33.6
Psat5g033800 Pisum sativum HOM05D004772 ORTHO05D006892 1.4e-82 311.6 352 54.0
CDE09G0311 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 3.1e-74 283.9 252 61.5
Zm00001eb063600 Zea mays HOM05D004772 ORTHO05D006892 2.7e-62 244.2 393 39.4
MCO02G008 Micromonas commoda HOM05D004772 ORTHO05D006892 6.0e-62 243.0 652 28.2
Cre12.g528950 Chlamydomonas reinhardtii HOM05D004772 ORTHO05D006892 1.8e-58 231.5 718 27.0
Hma1.2p1_0078F.1_g040290 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 6.7e-53 213.0 150 70.7
AL769U10010 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 1.1e-50 205.7 188 60.6
C09p33250 Brassica napus HOM05D004772 ORTHO05D006892 5.0e-48 196.8 260 49.2
BolC5t30856H Brassica oleracea HOM05D004772 ORTHO05D006892 2.5e-47 194.5 252 48.8
C05p21600 Brassica napus HOM05D004772 ORTHO05D006892 2.7e-38 164.5 252 45.6
BolC9t56162H Brassica oleracea HOM05D004772 ORTHO05D006892 7.9e-38 162.9 252 45.2
Glyma.08G191100 Glycine max HOM05D004772 ORTHO05D006892 5.1e-37 160.2 97 83.5
PRCOL_00000476 Prasinoderma coloniale HOM05D004772 ORTHO05D006892 5.1e-37 160.2 633 25.4
Lalb_Chr12g0201121 Lupinus albus HOM05D004772 ORTHO05D006892 1.5e-36 158.7 114 68.4
SEGI_16207 Sequoiadendron giganteum HOM05D004772 ORTHO05D006892 6.5e-32 143.3 98 67.3
SGA_v2.0_scaffold119G32683 Striga asiatica HOM05D000890 ORTHO05D000697 4.2e-31 140.6 140 50.7
Lalb_Chr12g0201101 Lupinus albus HOM05D004772 ORTHO05D006892 1.6e-30 138.7 112 63.4
BcaC05g26176 Brassica carinata HOM05D004772 ORTHO05D006892 5.2e-29 133.7 124 56.5
SalBow1G8756 Salvia bowleyana HOM05D004772 ORTHO05D006892 5.2e-29 133.7 190 45.3
Lalb_Chr12g0201111 Lupinus albus HOM05D004772 ORTHO05D020841 5.7e-28 130.2 145 53.8
Actinidia40307 Actinidia chinensis HOM05D004772 ORTHO05D006892 2.2e-27 128.3 589 28.0
SGA_v2.0_scaffold594G53106 Striga asiatica HOM05D004772 ORTHO05D006892 5.0e-24 117.1 299 30.4
HPP92_010686 Vanilla planifolia HOM05D004772 ORTHO05D006892 7.0e-18 96.7 125 47.2
BcaC04g21315 Brassica carinata HOM05D004772 ORTHO05D006892 1.0e-16 92.8 153 45.8
Cfa022899 Carpinus fangiana HOM05D004772 ORTHO05D006892 2.2e-16 91.7 400 25.2
Zm00001eb103930 Zea mays HOM05D004772 ORTHO05D020841 6.1e-14 83.6 121 39.7
Zm00001eb246110 Zea mays HOM05D004772 ORTHO05D020841 6.1e-14 83.6 121 39.7
Zm00001eb258700 Zea mays HOM05D004772 ORTHO05D020841 6.1e-14 83.6 121 39.7
Zm00001eb103920 Zea mays HOM05D004772 ORTHO05D020841 1.4e-13 82.4 121 38.8
Zm00001eb355950 Zea mays HOM05D004772 ORTHO05D020841 1.4e-13 82.4 121 38.8
Zm00001eb160280 Zea mays HOM05D004772 ORTHO05D020841 1.8e-13 82.0 121 38.8
Zm00001eb253290 Zea mays HOM05D004772 ORTHO05D037858 5.2e-13 80.5 151 38.4
BcaB04g18910 Brassica carinata HOM05D004772 ORTHO05D032275 6.3e-11 73.6 45 71.1
Medtr4g120460 Medicago truncatula HOM05D004772 ORTHO05D032275 8.3e-11 73.2 44 75.0
Nn4g25712 Nelumbo nucifera HOM05D004772 ORTHO05D006892 2.0e-09 68.6 62 58.1
A09p56420 Brassica napus HOM05D004772 ORTHO05D042523 1.3e-08 65.9 53 54.7
BraA09t41036Z Brassica rapa HOM05D004772 ORTHO05D042523 1.3e-08 65.9 53 54.7
Psat1g126080 Pisum sativum HOM05D004772 ORTHO05D032275 4.3e-07 60.8 72 50.0


User provided reference genes

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