Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_01140 Corylus avellana HOM05D002282 ORTHO05D002403 1.3e-97 359.8 181 100.0
Cfa006257 Carpinus fangiana HOM05D002282 ORTHO05D004557 2.8e-89 332.0 172 96.5
Haze_04567 Corylus avellana HOM05D002282 ORTHO05D002403 1.1e-88 330.1 167 98.2
Cfa015451 Carpinus fangiana HOM05D002282 ORTHO05D002403 6.9e-88 327.4 167 97.6
CiPaw.01G144200 Carya illinoinensis HOM05D002282 ORTHO05D002403 2.2e-81 305.8 167 89.8
QL06p010943 Quercus lobata HOM05D002282 ORTHO05D002403 5.9e-79 297.7 168 88.1
Duzib052G0572 Durio zibethinus HOM05D002282 ORTHO05D002403 1.0e-75 287.0 167 82.0
COL.COLO4_03675 Corchorus olitorius HOM05D002282 ORTHO05D002403 3.9e-75 285.0 167 80.8
Gohir.D09G062700 Gossypium hirsutum HOM05D002282 ORTHO05D002403 8.8e-75 283.9 167 80.2
Gorai.006G077500 Gossypium raimondii HOM05D002282 ORTHO05D002403 8.8e-75 283.9 167 80.2
TAR365G0623 Trochodendron aralioides HOM05D002282 ORTHO05D002403 1.1e-74 283.5 167 81.4
Gohir.A09G063800 Gossypium hirsutum HOM05D002282 ORTHO05D002403 1.5e-74 283.1 167 80.2
Dinv29708 Davidia involucrata HOM05D002282 ORTHO05D002403 2.0e-74 282.7 167 80.2
Actinidia13378 Actinidia chinensis HOM05D002282 ORTHO05D002403 9.7e-74 280.4 167 81.4
TWI09G1448 Tripterygium wilfordii HOM05D002282 ORTHO05D002403 1.3e-73 280.0 167 80.2
ClCG06G004860 Citrullus lanatus HOM05D002282 ORTHO05D002403 2.2e-73 279.3 167 79.6
Thecc.04G291300 Theobroma cacao HOM05D002282 ORTHO05D002403 4.8e-73 278.1 167 78.4
Ciclev10004544m.g Citrus clementina HOM05D002282 ORTHO05D002403 1.8e-72 276.2 168 78.6
GSVIVG01035079001 Vitis vinifera HOM05D002282 ORTHO05D002403 1.8e-72 276.2 167 80.8
Hund11944 Selenicereus undatus HOM05D002282 ORTHO05D002403 4.1e-72 275.0 169 75.1
CANSAT35G1122 Cannabis sativa HOM05D002282 ORTHO05D002403 1.2e-71 273.5 169 75.7
Lj3A826G75 Lonicera japonica HOM05D002282 ORTHO05D002403 1.2e-71 273.5 167 78.4
Potri.010G005400 Populus trichocarpa HOM05D002282 ORTHO05D002403 1.7e-70 269.6 167 79.6
CSS0020497 Camellia sinensis var. sinensis HOM05D002282 ORTHO05D002403 2.2e-70 269.2 169 76.3
Nn8g40612 Nelumbo nucifera HOM05D002282 ORTHO05D002403 2.2e-70 269.2 167 75.4
Sed0017061 Sechium edule HOM05D002282 ORTHO05D002403 2.2e-70 269.2 164 78.0
vmacro02293 Vaccinium macrocarpon HOM05D002282 ORTHO05D002403 2.2e-70 269.2 167 76.0
Sabra10G0004600 Salix brachista HOM05D002282 ORTHO05D002403 2.9e-70 268.9 168 79.2
AUR62016160 Chenopodium quinoa HOM05D002282 ORTHO05D002403 3.8e-70 268.5 168 73.8
EL10Ac3g04935 Beta vulgaris HOM05D002282 ORTHO05D002403 8.5e-70 267.3 168 73.8
Prupe.1G129200 Prunus persica HOM05D002282 ORTHO05D002403 1.9e-69 266.2 167 77.2
arahy.Tifrunner.gnm1.ann1.C0TKG5 Arachis hypogaea HOM05D002282 ORTHO05D002403 2.5e-69 265.8 167 73.7
AUR62035074 Chenopodium quinoa HOM05D002282 ORTHO05D002403 2.5e-69 265.8 168 72.6
AUR62044456 Chenopodium quinoa HOM05D002282 ORTHO05D002403 2.5e-69 265.8 168 72.6
arahy.Tifrunner.gnm1.ann1.3PI56D Arachis hypogaea HOM05D002282 ORTHO05D002403 3.2e-69 265.4 167 73.7
Cpa.g.sc9.113 Carica papaya HOM05D002282 ORTHO05D002403 3.2e-69 265.4 167 74.9
Manes.15G008900 Manihot esculenta HOM05D002282 ORTHO05D002403 5.5e-69 264.6 167 79.0
PGR031G2323 Punica granatum HOM05D002282 ORTHO05D002403 5.5e-69 264.6 167 76.6
vmacro13795 Vaccinium macrocarpon HOM05D002282 ORTHO05D002403 5.5e-69 264.6 177 75.1
MBI19_g05149_MAGBIO Magnolia biondii HOM05D002282 ORTHO05D002403 7.2e-69 264.2 174 73.0
CsaV3_6G022650 Cucumis sativus L. HOM05D002282 ORTHO05D002403 1.2e-68 263.5 167 76.0
Cc03_g01330 Coffea canephora HOM05D002282 ORTHO05D002403 1.6e-68 263.1 169 75.7
ECA240G0914 Erigeron canadensis HOM05D002282 ORTHO05D002403 1.6e-68 263.1 164 76.2
MELO3C021295.2 Cucumis melo HOM05D002282 ORTHO05D002403 2.7e-68 262.3 167 74.9
THA.LOC104805829 Tarenaya hassleriana HOM05D002282 ORTHO05D002403 4.7e-68 261.5 167 70.7
MD16G1161700 Malus domestica HOM05D002282 ORTHO05D002403 6.1e-68 261.2 167 75.4
Rhsim02G0006600 Rhododendron simsii HOM05D002282 ORTHO05D002403 8.0e-68 260.8 168 77.4
DCAR_027041 Daucus carota HOM05D002282 ORTHO05D002403 1.0e-67 260.4 167 74.9
C09p65630 Brassica napus HOM05D002282 ORTHO05D002403 1.4e-67 260.0 179 68.2
MD13G1161900 Malus domestica HOM05D002282 ORTHO05D002403 1.8e-67 259.6 167 75.4
Sopen02g009400 Solanum pennellii HOM05D002282 ORTHO05D002403 1.8e-67 259.6 167 73.7
BcaB08g37077 Brassica carinata HOM05D002282 ORTHO05D002403 2.3e-67 259.2 167 71.3
BcaNung01920 Brassica carinata HOM05D002282 ORTHO05D002403 2.3e-67 259.2 167 71.3
A10p26480 Brassica napus HOM05D002282 ORTHO05D002403 2.3e-67 259.2 167 71.3
BraA02t05075Z Brassica rapa HOM05D002282 ORTHO05D002403 2.3e-67 259.2 167 71.3
BraA10t44705Z Brassica rapa HOM05D002282 ORTHO05D002403 2.3e-67 259.2 167 71.3
Sp6g32320 Schrenkiella parvula HOM05D002282 ORTHO05D002403 2.3e-67 259.2 167 71.3
BcaC04g19248 Brassica carinata HOM05D002282 ORTHO05D002403 3.0e-67 258.8 179 67.6
BolC9t59386H Brassica oleracea HOM05D002282 ORTHO05D002403 3.0e-67 258.8 179 67.6
Lsat_1_v5_gn_6_76141 Lactuca sativa HOM05D002282 ORTHO05D002403 3.0e-67 258.8 182 69.2
A02p00910 Brassica napus HOM05D002282 ORTHO05D002403 3.9e-67 258.5 167 70.7
Peaxi162Scf00065g01016 Petunia axillaris HOM05D002282 ORTHO05D002403 3.9e-67 258.5 168 72.6
Thhalv10012983m.g Eutrema salsugineum HOM05D002282 ORTHO05D002403 5.2e-67 258.1 167 70.7
PGSC0003DMG400011805 Solanum tuberosum HOM05D002282 ORTHO05D002403 5.2e-67 258.1 167 73.1
MSTRG.10121 Avicennia marina HOM05D002282 ORTHO05D002403 6.7e-67 257.7 180 68.3
Oeu006431.1 Olea europaea HOM05D002282 ORTHO05D002403 8.8e-67 257.3 168 73.2
Carub.0006s0971 Capsella rubella HOM05D002282 ORTHO05D002403 1.1e-66 256.9 167 70.7
Solyc02g030080.4 Solanum lycopersicum HOM05D002282 ORTHO05D002403 1.5e-66 256.5 170 71.2
Ca_21469_v3 Cicer arietinum L. HOM05D002282 ORTHO05D002403 2.6e-66 255.8 168 72.0
AL6G21870 Arabidopsis lyrata HOM05D002282 ORTHO05D002403 3.3e-66 255.4 167 69.5
AT5G11240 Arabidopsis thaliana HOM05D002282 ORTHO05D002403 3.3e-66 255.4 167 69.5
CARHR202100 Cardamine hirsuta HOM05D002282 ORTHO05D002403 5.7e-66 254.6 167 69.5
RcHm_v2.0_Chr4g0423831 Rosa chinensis HOM05D002282 ORTHO05D002403 1.3e-65 253.4 167 74.3
Aa31LG3G15950 Aethionema arabicum HOM05D002282 ORTHO05D002403 2.8e-65 252.3 167 70.1
CAN.G306.6 Capsicum annuum HOM05D002282 ORTHO05D002403 3.7e-65 251.9 168 73.2
TPR.G4827 Trifolium pratense HOM05D002282 ORTHO05D002403 8.2e-65 250.8 168 73.2
Psat4g024880 Pisum sativum HOM05D002282 ORTHO05D002403 1.4e-64 250.0 167 71.9
FAN05G0042 Fragaria x ananassa HOM05D002282 ORTHO05D002403 2.4e-64 249.2 162 75.9
Lalb_Chr12g0201081 Lupinus albus HOM05D002282 ORTHO05D002403 4.1e-64 248.4 169 72.2
FvH4_6g31810 Fragaria vesca HOM05D002282 ORTHO05D002403 7.0e-64 247.7 162 74.7
FAN09G1184 Fragaria x ananassa HOM05D002282 ORTHO05D002403 7.0e-64 247.7 162 74.7
FAN02G0515 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.6e-63 246.5 162 74.1
Migut.G00119 Erythranthe guttata HOM05D002282 ORTHO05D002403 2.0e-63 246.1 167 71.3
FAN14G3556 Fragaria x ananassa HOM05D002282 ORTHO05D002403 2.0e-63 246.1 162 74.1
Eucgr.A01301 Eucalyptus grandis HOM05D002282 ORTHO05D002403 7.7e-63 244.2 166 69.9
PSO407G0173 Papaver somniferum HOM05D002282 ORTHO05D002403 1.5e-61 240.0 177 66.7
HanXRQChr03g0084951 Helianthus annuus HOM05D002282 ORTHO05D002403 1.9e-61 239.6 169 69.8
Lj4g0005439 Lotus japonicus HOM05D002282 ORTHO05D002403 1.9e-61 239.6 163 71.8
Lj4g0022588 Lotus japonicus HOM05D002282 ORTHO05D002403 1.9e-61 239.6 163 71.8
Aqoxy7G01538 Aquilegia oxysepala HOM05D002282 ORTHO05D002403 9.4e-61 237.3 171 67.8
PSO170G5250 Papaver somniferum HOM05D002282 ORTHO05D002403 9.4e-61 237.3 177 66.1
Atru.chr4.2932 Acer truncatum HOM05D002282 ORTHO05D002403 1.2e-60 236.9 168 69.0
VMungo1215G3370 Vigna mungo HOM05D002282 ORTHO05D002403 4.7e-60 235.0 168 66.7
Glyma.17G029800 Glycine max HOM05D002282 ORTHO05D002403 8.0e-60 234.2 170 65.3
SGA_v2.0_scaffold146G36232 Striga asiatica HOM05D002282 ORTHO05D002403 1.4e-59 233.4 160 68.1
Phvul.003G108800 Phaseolus vulgaris HOM05D002282 ORTHO05D002403 5.2e-59 231.5 168 66.1
Medtr4g120740 Medicago truncatula HOM05D002282 ORTHO05D002403 2.0e-58 229.6 166 68.7
Glyma.07G244100 Glycine max HOM05D002282 ORTHO05D002403 4.4e-58 228.4 170 64.1
Sc19g0003390 Simmondsia chinensis HOM05D002282 ORTHO05D002403 5.7e-58 228.0 169 65.7
Glyma.10G110200 Glycine max HOM05D002282 ORTHO05D002403 2.2e-57 226.1 170 63.5
Lj5A688G9 Lonicera japonica HOM05D002282 ORTHO05D002403 1.4e-56 223.4 138 75.4
Zm00001eb013980 Zea mays HOM05D002282 ORTHO05D002403 2.7e-55 219.2 162 64.2
Os03g0300300 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 1.0e-54 217.2 167 61.1
Ah.04g155130 Amaranthus hybridus HOM05D002282 ORTHO05D002403 1.6e-52 209.9 138 70.3
HPP92_021476 Vanilla planifolia HOM05D002282 ORTHO05D002403 2.1e-52 209.5 163 60.7
ATR0693G215 Amborella trichopoda HOM05D002282 ORTHO05D002403 1.0e-51 207.2 168 60.7
SEGI_26113 Sequoiadendron giganteum HOM05D002282 ORTHO05D002403 4.4e-50 201.8 163 60.1
CDE05G3405 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 2.4e-48 196.1 154 62.3
Nitab4.5_0000378g0050 Nicotiana tabacum HOM05D002282 ORTHO05D002403 3.5e-47 192.2 167 59.9
Nitab4.5_0001298g0020 Nicotiana tabacum HOM05D002282 ORTHO05D002403 5.9e-47 191.4 167 59.9
Nitab4.5_0004432g0020 Nicotiana tabacum HOM05D002282 ORTHO05D002403 7.2e-45 184.5 165 58.8
Mapoly0078s0006 Marchantia polymorpha HOM05D002282 ORTHO05D002403 3.1e-40 169.1 169 52.1
AagrBONN_evm.TU.Sc2ySwM_362.229 Anthoceros agrestis HOM05D002282 ORTHO05D002403 4.3e-37 158.7 173 47.4
CDE11G1255 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 4.9e-33 145.2 125 57.6
Actinidia02885 Actinidia chinensis HOM05D002282 ORTHO05D002403 4.1e-32 142.1 85 80.0
unitig_37.g12403 Utricularia gibba HOM05D002282 ORTHO05D002403 1.7e-30 136.7 101 64.4
ATR0580G098 Amborella trichopoda HOM05D002282 ORTHO05D002403 1.6e-28 130.2 158 43.7
Pp3c7_70 Physcomitrium patens HOM05D002282 ORTHO05D002403 3.6e-28 129.0 168 36.9
CBR_g57080 Chara braunii HOM05D002282 ORTHO05D002403 1.1e-27 127.5 175 37.7
C02p04930 Brassica napus HOM05D002282 ORTHO05D002403 8.9e-27 124.4 90 65.6
BolC2t06451H Brassica oleracea HOM05D002282 ORTHO05D002403 8.9e-27 124.4 90 65.6
CDE07G0270 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 2.2e-25 119.8 167 37.1
Atru.chr1.3116 Acer truncatum HOM05D002282 ORTHO05D002403 4.9e-25 118.6 167 36.5
SMO361G0163 Selaginella moellendorffii HOM05D002282 ORTHO05D002403 1.4e-24 117.1 159 37.1
Nn2g11949 Nelumbo nucifera HOM05D002282 ORTHO05D002403 5.4e-24 115.2 167 37.1
Manes.04G116700 Manihot esculenta HOM05D002282 ORTHO05D002403 4.6e-23 112.1 167 35.9
MELO3C023398.2 Cucumis melo HOM05D002282 ORTHO05D002403 3.9e-22 109.0 158 36.7
TPR.G38626 Trifolium pratense HOM05D002282 ORTHO05D002403 1.1e-21 107.5 159 37.1
Ciclev10025131m.g Citrus clementina HOM05D002282 ORTHO05D002403 1.5e-21 107.1 162 34.0
Sed0003011 Sechium edule HOM05D002282 ORTHO05D002403 1.9e-21 106.7 158 35.4
Actinidia14272 Actinidia chinensis HOM05D002282 ORTHO05D002403 5.6e-21 105.1 91 59.3
Gohir.A05G124900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 7.3e-21 104.8 167 31.7
Gohir.D05G125900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 7.3e-21 104.8 167 32.3
Dinv30569 Davidia involucrata HOM05D002282 ORTHO05D002403 9.5e-21 104.4 162 32.7
Actinidia01770 Actinidia chinensis HOM05D002282 ORTHO05D002403 1.2e-20 104.0 165 32.1
CsaV3_7G032650 Cucumis sativus L. HOM05D002282 ORTHO05D002403 1.6e-20 103.6 158 36.1
Lj3g0004862 Lotus japonicus HOM05D002282 ORTHO05D002403 2.8e-20 102.8 159 35.8
COL.COLO4_12890 Corchorus olitorius HOM05D002282 ORTHO05D002403 1.4e-19 100.5 167 33.5
Medtr4g011300 Medicago truncatula HOM05D002282 ORTHO05D002403 1.8e-19 100.1 159 35.8
Gorai.009G129900 Gossypium raimondii HOM05D002282 ORTHO05D002403 6.8e-19 98.2 167 31.7
Psat7g255200 Pisum sativum HOM05D002282 ORTHO05D002403 8.9e-19 97.8 159 34.6
Sed0027048 Sechium edule HOM05D002282 ORTHO05D002403 1.2e-18 97.4 158 33.5
CANSAT56G4088 Cannabis sativa HOM05D002282 ORTHO05D002403 2.0e-18 96.7 162 31.5
Cc04_g04050 Coffea canephora HOM05D002282 ORTHO05D002403 2.0e-18 96.7 161 31.1
DCAR_025482 Daucus carota HOM05D002282 ORTHO05D002403 2.6e-18 96.3 151 33.8
GSVIVG01017246001 Vitis vinifera HOM05D002282 ORTHO05D002403 4.4e-18 95.5 163 32.5
vmacro18959 Vaccinium macrocarpon HOM05D002282 ORTHO05D002403 5.8e-18 95.1 150 32.7
Rhsim08G0216500 Rhododendron simsii HOM05D002282 ORTHO05D002403 9.9e-18 94.4 162 30.9
MBI04_g10418_MAGBIO Magnolia biondii HOM05D002282 ORTHO05D002403 1.3e-17 94.0 140 36.4
Lalb_Chr04g0262501 Lupinus albus HOM05D002282 ORTHO05D002403 2.2e-17 93.2 168 33.3
Glyma.08G210000 Glycine max HOM05D002282 ORTHO05D002403 7.1e-16 88.2 161 31.1
PGR031G0824 Punica granatum HOM05D002282 ORTHO05D002403 2.1e-15 86.7 168 30.4
Cpa.g.sc336.4 Carica papaya HOM05D002282 ORTHO05D002403 4.6e-15 85.5 167 31.1
Phvul.010G153600 Phaseolus vulgaris HOM05D002282 ORTHO05D002403 4.6e-15 85.5 161 31.7
Lj5A68G60 Lonicera japonica HOM05D002282 ORTHO05D002403 1.7e-14 83.6 132 32.6
Cre12.g538500 Chlamydomonas reinhardtii HOM05D002282 ORTHO05D002403 3.9e-14 82.4 161 31.7
ClCG09G002680 Citrullus lanatus HOM05D002282 ORTHO05D002403 5.1e-14 82.0 102 41.2
Nitab4.5_0006574g0100 Nicotiana tabacum HOM05D002282 ORTHO05D002403 6.6e-14 81.6 167 26.9
THA.LOC104812495 Tarenaya hassleriana HOM05D002282 ORTHO05D002403 6.6e-14 81.6 168 28.0
Actinidia15800 Actinidia chinensis HOM05D002282 ORTHO05D002403 8.6e-14 81.3 128 32.0
VMungo0331G0533 Vigna mungo HOM05D002282 ORTHO05D002403 8.6e-14 81.3 161 32.3
CAN.G407.112 Capsicum annuum HOM05D002282 ORTHO05D002403 1.5e-13 80.5 167 26.9
Actinidia14273 Actinidia chinensis HOM05D000338 ORTHO05D002403 3.3e-13 79.3 45 82.2
Peaxi162Scf00274g00850 Petunia axillaris HOM05D002282 ORTHO05D002403 7.3e-13 78.2 167 29.3
Nitab4.5_0002257g0110 Nicotiana tabacum HOM05D002282 ORTHO05D002403 1.6e-12 77.0 167 25.7
Lsat_1_v5_gn_1_33521 Lactuca sativa HOM05D002282 ORTHO05D002403 2.8e-12 76.3 162 25.9
PGSC0003DMG400000602 Solanum tuberosum HOM05D002282 ORTHO05D002403 6.2e-12 75.1 167 27.5
Sopen03g035310 Solanum pennellii HOM05D002282 ORTHO05D002403 1.8e-11 73.6 167 26.3
Os01g0649000 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 5.2e-11 72.0 157 33.1
ECA247G0800 Erigeron canadensis HOM05D002282 ORTHO05D002403 6.8e-11 71.6 146 29.5
Solyc03g116380.4 Solanum lycopersicum HOM05D002282 ORTHO05D002403 2.6e-10 69.7 167 25.1
Nn3g21580 Nelumbo nucifera HOM05D002282 ORTHO05D002403 7.6e-10 68.2 50 62.0
CSS0048718 Camellia sinensis var. sinensis HOM05D002282 ORTHO05D002403 2.4e-08 63.2 77 35.1
PRCOL_00005222 Prasinoderma coloniale HOM05D002282 ORTHO05D002403 3.2e-08 62.8 71 39.4
GSVIVG01035087001 Vitis vinifera HOM05D002282 ORTHO05D002403 7.1e-08 61.6 33 87.9
Glyma.07G032500 Glycine max HOM05D002282 ORTHO05D002403 3.5e-07 59.3 89 33.7
HanXRQChr04g0097161 Helianthus annuus HOM05D002282 ORTHO05D002403 3.5e-07 59.3 165 21.2
HanXRQChr04g0097221 Helianthus annuus HOM05D002282 ORTHO05D002403 7.8e-07 58.2 156 21.8
Ca_20422_v3 Cicer arietinum L. HOM05D002282 ORTHO05D002403 3.0e-06 56.2 98 33.7


User provided reference genes

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