Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00903 Corylus avellana HOM05D004138 ORTHO05D004898 2.9e-199 698.4 346 100.0
Haze_03894 Corylus avellana HOM05D004138 ORTHO05D004898 9.9e-176 620.2 346 92.2
Cfa015643 Carpinus fangiana HOM05D004138 ORTHO05D004898 1.6e-146 523.1 287 93.7
CiPaw.02G097200 Carya illinoinensis HOM05D004138 ORTHO05D004898 2.3e-124 449.5 280 83.2
CiPaw.01G165700 Carya illinoinensis HOM05D004138 ORTHO05D004898 9.7e-115 417.5 280 80.0
QL06p002509 Quercus lobata HOM05D004138 ORTHO05D004898 4.1e-113 412.1 295 76.3
arahy.Tifrunner.gnm1.ann1.WZ653D Arachis hypogaea HOM05D004138 ORTHO05D004898 3.0e-108 396.0 265 79.6
Dinv44535 Davidia involucrata HOM05D004138 ORTHO05D004898 6.7e-108 394.8 264 77.7
arahy.Tifrunner.gnm1.ann1.Y7X6HY Arachis hypogaea HOM05D004138 ORTHO05D004898 8.8e-108 394.4 265 79.2
Glyma.20G145900 Glycine max HOM05D004138 ORTHO05D004898 3.3e-107 392.5 280 75.7
Lj5g0002897 Lotus japonicus HOM05D004138 ORTHO05D004898 1.1e-105 387.5 281 74.4
CSS0012312 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 9.1e-105 384.4 264 76.9
VMungo0720G1944 Vigna mungo HOM05D004138 ORTHO05D004898 1.2e-104 384.0 265 75.8
Hma1.2p1_1344F.1_g277140 Hydrangea macrophylla HOM05D004138 ORTHO05D004898 2.0e-104 383.3 261 77.0
Phvul.007G057200 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 2.0e-104 383.3 282 73.8
Phvul.007G275100 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 4.5e-104 382.1 280 74.3
arahy.Tifrunner.gnm1.ann1.M0DXBI Arachis hypogaea HOM05D004138 ORTHO05D004898 5.9e-104 381.7 252 79.4
VMungo0720G0383 Vigna mungo HOM05D004138 ORTHO05D004898 7.7e-104 381.3 282 73.0
CSS0016260 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 1.0e-103 380.9 267 75.3
TPR.G34563 Trifolium pratense HOM05D004138 ORTHO05D004898 3.8e-103 379.0 280 73.6
Ca_26329_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 1.5e-102 377.1 248 77.0
TPR.G5464 Trifolium pratense HOM05D004138 ORTHO05D004898 1.5e-102 377.1 280 72.9
MD16G1193500 Malus domestica HOM05D004138 ORTHO05D004898 2.5e-102 376.3 288 72.9
Medtr1g103820 Medicago truncatula HOM05D004138 ORTHO05D004898 2.5e-102 376.3 259 74.9
Lj6A608T71 Lonicera japonica HOM05D004138 ORTHO05D004898 4.2e-102 375.6 221 84.2
MD13G1192800 Malus domestica HOM05D004138 ORTHO05D004898 4.2e-102 375.6 285 71.6
CANSAT78G2043 Cannabis sativa HOM05D004138 ORTHO05D004898 9.4e-102 374.4 283 71.7
TAR365G0475 Trochodendron aralioides HOM05D004138 ORTHO05D004898 9.4e-102 374.4 296 70.6
TAR636G0642 Trochodendron aralioides HOM05D004138 ORTHO05D004898 1.6e-101 373.6 228 82.5
Lalb_Chr17g0338611 Lupinus albus HOM05D004138 ORTHO05D004898 1.8e-100 370.2 272 74.6
Manes.03G178800 Manihot esculenta HOM05D004138 ORTHO05D004898 2.3e-100 369.8 284 71.5
Lj3A735T49 Lonicera japonica HOM05D004138 ORTHO05D004898 4.0e-100 369.0 269 72.5
Nn4g26636 Nelumbo nucifera HOM05D004138 ORTHO05D004898 5.2e-100 368.6 266 73.3
Nitab4.5_0001560g0020 Nicotiana tabacum HOM05D004138 ORTHO05D004898 5.2e-100 368.6 262 75.6
Ca_10902_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 8.8e-100 367.9 280 72.5
Eucgr.H03482 Eucalyptus grandis HOM05D004138 ORTHO05D004898 2.0e-99 366.7 230 80.4
Gorai.006G239100 Gossypium raimondii HOM05D004138 ORTHO05D004898 2.0e-99 366.7 265 72.8
Psat6g207600 Pisum sativum HOM05D004138 ORTHO05D004898 2.0e-99 366.7 262 73.7
FAN22G1640 Fragaria x ananassa HOM05D004138 ORTHO05D004898 5.7e-99 365.2 276 71.7
TWI15G0835 Tripterygium wilfordii HOM05D004138 ORTHO05D004898 5.7e-99 365.2 280 70.4
Gohir.D09G218200 Gossypium hirsutum HOM05D004138 ORTHO05D004898 7.5e-99 364.8 265 73.2
Gohir.A09G215700 Gossypium hirsutum HOM05D004138 ORTHO05D004898 1.3e-98 364.0 264 72.3
Atru.ctg752_3.80 Acer truncatum HOM05D004138 ORTHO05D004898 1.7e-98 363.6 264 73.1
Duzib052G0532 Durio zibethinus HOM05D004138 ORTHO05D004898 2.8e-98 362.8 268 70.9
FAN12G1931 Fragaria x ananassa HOM05D004138 ORTHO05D004898 3.7e-98 362.5 274 70.4
Rhsim02G0024100 Rhododendron simsii HOM05D004138 ORTHO05D004898 3.7e-98 362.5 293 65.9
SalBow3G1121 Salvia bowleyana HOM05D004138 ORTHO05D004898 6.3e-98 361.7 256 76.2
PGR004G1517 Punica granatum HOM05D004138 ORTHO05D004898 1.4e-97 360.5 268 72.4
MSTRG.21855 Avicennia marina HOM05D004138 ORTHO05D004898 1.8e-97 360.1 263 72.6
EL10Ac1g01312 Beta vulgaris HOM05D004138 ORTHO05D004898 1.8e-97 360.1 274 69.3
DCAR_002386 Daucus carota HOM05D004138 ORTHO05D004898 1.8e-97 360.1 266 72.2
Lalb_Chr10g0096121 Lupinus albus HOM05D004138 ORTHO05D004898 2.4e-97 359.8 266 74.1
Solyc09g076020.3 Solanum lycopersicum HOM05D004138 ORTHO05D004898 3.1e-97 359.4 281 70.8
RcHm_v2.0_Chr4g0416251 Rosa chinensis HOM05D004138 ORTHO05D004898 4.1e-97 359.0 281 68.0
CAN.G490.3 Capsicum annuum HOM05D004138 ORTHO05D004898 5.4e-97 358.6 237 78.1
CsaV3_7G022530 Cucumis sativus L. HOM05D004138 ORTHO05D004898 7.0e-97 358.2 282 68.4
Ciclev10005599m.g Citrus clementina HOM05D004138 ORTHO05D004898 9.1e-97 357.8 287 69.0
FvH4_4g15510 Fragaria vesca HOM05D004138 ORTHO05D004898 9.1e-97 357.8 272 70.2
Thecc.04G231800 Theobroma cacao HOM05D004138 ORTHO05D004898 1.2e-96 357.5 260 72.7
AT4G14910 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 1.6e-96 357.1 271 72.3
A01p32660 Brassica napus HOM05D004138 ORTHO05D004898 1.6e-96 357.1 257 72.8
FAN07G1942 Fragaria x ananassa HOM05D004138 ORTHO05D004898 2.0e-96 356.7 274 70.8
GSVIVG01017973001 Vitis vinifera HOM05D004138 ORTHO05D004898 2.0e-96 356.7 223 78.9
C01p41840 Brassica napus HOM05D004138 ORTHO05D004898 2.7e-96 356.3 282 68.1
Potri.010G087600 Populus trichocarpa HOM05D004138 ORTHO05D004898 2.7e-96 356.3 282 67.4
AUR62034751 Chenopodium quinoa HOM05D004138 ORTHO05D004898 3.5e-96 355.9 275 69.5
Oeu050278.3 Olea europaea HOM05D004138 ORTHO05D004898 3.5e-96 355.9 261 71.6
FAN17G0737 Fragaria x ananassa HOM05D004138 ORTHO05D004898 4.5e-96 355.5 274 70.8
PSO210G3182 Papaver somniferum HOM05D004138 ORTHO05D004898 5.9e-96 355.1 282 67.7
Sopen09g030850 Solanum pennellii HOM05D004138 ORTHO05D004898 5.9e-96 355.1 281 70.1
BolC1t04138H Brassica oleracea HOM05D004138 ORTHO05D004898 7.7e-96 354.8 282 67.7
BraA01t03394Z Brassica rapa HOM05D004138 ORTHO05D004898 7.7e-96 354.8 271 69.0
BcaB04g20518 Brassica carinata HOM05D004138 ORTHO05D004898 1.0e-95 354.4 282 67.7
Cc03_g03750 Coffea canephora HOM05D004138 ORTHO05D004898 1.0e-95 354.4 223 80.3
Rhsim02G0024500 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.0e-95 354.4 313 62.0
Sp3g20190 Schrenkiella parvula HOM05D004138 ORTHO05D004898 1.0e-95 354.4 264 70.5
BcaB02g07851 Brassica carinata HOM05D004138 ORTHO05D004898 1.3e-95 354.0 282 68.4
AUR62033623 Chenopodium quinoa HOM05D004138 ORTHO05D004898 1.3e-95 354.0 265 71.3
Migut.N00183 Erythranthe guttata HOM05D004138 ORTHO05D004898 2.3e-95 353.2 280 69.3
Lsat_1_v5_gn_2_31480 Lactuca sativa HOM05D004138 ORTHO05D004898 2.3e-95 353.2 266 71.4
AL7G40920 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 2.9e-95 352.8 267 72.3
Thhalv10021310m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 3.8e-95 352.4 265 70.2
PSO832G0920 Papaver somniferum HOM05D004138 ORTHO05D004898 3.8e-95 352.4 282 67.4
BolC5t32835H Brassica oleracea HOM05D004138 ORTHO05D004898 5.0e-95 352.1 237 74.7
THA.LOC104808545 Tarenaya hassleriana HOM05D004138 ORTHO05D004898 5.0e-95 352.1 260 69.6
Sed0017770 Sechium edule HOM05D004138 ORTHO05D004898 6.6e-95 351.7 285 67.4
PGSC0003DMG400030085 Solanum tuberosum HOM05D004138 ORTHO05D004898 6.6e-95 351.7 223 80.7
MELO3C012647.2 Cucumis melo HOM05D004138 ORTHO05D004898 8.6e-95 351.3 333 61.0
BcaC09g49174 Brassica carinata HOM05D004138 ORTHO05D004898 1.5e-94 350.5 280 67.5
BcaC05g28070 Brassica carinata HOM05D004138 ORTHO05D004898 9.5e-94 347.8 235 74.5
C05p40930 Brassica napus HOM05D004138 ORTHO05D004898 9.5e-94 347.8 235 74.5
Aqoxy2G03389 Aquilegia oxysepala HOM05D004138 ORTHO05D004898 1.2e-93 347.4 234 76.9
A05p26300 Brassica napus HOM05D004138 ORTHO05D004898 1.2e-93 347.4 237 75.5
DCAR_027216 Daucus carota HOM05D004138 ORTHO05D004898 1.2e-93 347.4 195 88.2
Sp7g13050 Schrenkiella parvula HOM05D004138 ORTHO05D004898 1.2e-93 347.4 281 67.3
ATR0697G231 Amborella trichopoda HOM05D004138 ORTHO05D004898 3.6e-93 345.9 227 78.9
Carub.0003s2260 Capsella rubella HOM05D004138 ORTHO05D004898 4.7e-93 345.5 268 70.5
Sc10g0004960 Simmondsia chinensis HOM05D004138 ORTHO05D004898 4.7e-93 345.5 267 70.8
Carub.0007s2719 Capsella rubella HOM05D004138 ORTHO05D004898 6.1e-93 345.1 235 77.9
AT3G22425 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 8.0e-93 344.7 281 67.3
CARHR098330 Cardamine hirsuta HOM05D004138 ORTHO05D004898 8.0e-93 344.7 265 69.8
CARHR221500 Cardamine hirsuta HOM05D004138 ORTHO05D004898 8.0e-93 344.7 225 78.7
Cpa.g.sc58.111 Carica papaya HOM05D004138 ORTHO05D004898 8.0e-93 344.7 299 64.9
CDE07G0326 Ceratophyllum demersum HOM05D004138 ORTHO05D004898 1.8e-92 343.6 210 81.0
Aa31LG8G8990 Aethionema arabicum HOM05D004138 ORTHO05D004898 3.0e-92 342.8 271 68.3
BcaB06g26344 Brassica carinata HOM05D004138 ORTHO05D004898 3.0e-92 342.8 237 74.7
Thhalv10025980m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 3.0e-92 342.8 251 71.3
ECA238G3454 Erigeron canadensis HOM05D004138 ORTHO05D004898 6.8e-92 341.7 281 67.3
HanXRQChr09g0265721 Helianthus annuus HOM05D004138 ORTHO05D004898 1.8e-89 333.6 242 71.9
Sed0010859 Sechium edule HOM05D004138 ORTHO05D004898 1.8e-89 333.6 235 71.1
HanXRQChr14g0432251 Helianthus annuus HOM05D004138 ORTHO05D004898 5.4e-89 332.0 264 67.8
Actinidia36959 Actinidia chinensis HOM05D004138 ORTHO05D004898 9.2e-89 331.3 265 70.2
Prupe.1G013300 Prunus persica HOM05D004138 ORTHO05D004898 6.6e-87 325.1 287 65.9
Os04g0617800 Oryza sativa ssp. japonica HOM05D004138 ORTHO05D004898 8.6e-87 324.7 274 67.2
Zm00001eb070570 Zea mays HOM05D004138 ORTHO05D004898 1.4e-84 317.4 196 82.1
Mapoly0095s0045 Marchantia polymorpha HOM05D004138 ORTHO05D004898 4.0e-84 315.8 195 79.0
Pp3c13_21930 Physcomitrium patens HOM05D004138 ORTHO05D004898 8.9e-84 314.7 195 79.5
Rhsim02G0024700 Rhododendron simsii HOM05D004138 ORTHO05D004898 5.8e-83 312.0 319 56.7
ClCG06G006210 Citrullus lanatus HOM05D004138 ORTHO05D004898 9.8e-83 311.2 304 58.6
Nitab4.5_0000043g0130 Nicotiana tabacum HOM05D004138 ORTHO05D004898 2.0e-80 303.5 293 60.1
CBR_g48324 Chara braunii HOM05D004138 ORTHO05D004898 6.6e-79 298.5 195 76.4
Potri.008G152701 Populus trichocarpa HOM05D004138 ORTHO05D004898 6.6e-79 298.5 217 71.0
Rhsim02G0025100 Rhododendron simsii HOM05D004138 ORTHO05D004898 6.6e-79 298.5 229 67.2
Psat6g050360 Pisum sativum HOM05D004138 ORTHO05D004898 2.5e-78 296.6 163 88.3
SGA_v2.0_scaffold10G05080 Striga asiatica HOM05D004138 ORTHO05D004898 2.8e-77 293.1 186 80.6
Hund12131 Selenicereus undatus HOM05D004138 ORTHO05D004898 3.6e-77 292.7 267 61.4
SGA_v2.0_scaffold20G09126 Striga asiatica HOM05D004138 ORTHO05D004898 3.6e-77 292.7 190 79.5
Rhsim02G0024200 Rhododendron simsii HOM05D004138 ORTHO05D004898 8.0e-77 291.6 292 57.2
Oeu031232.1 Olea europaea HOM05D004138 ORTHO05D004898 5.2e-76 288.9 162 87.0
Rhsim02G0025200 Rhododendron simsii HOM05D004138 ORTHO05D004898 5.8e-75 285.4 275 60.0
Dinv13992 Davidia involucrata HOM05D004138 ORTHO05D004898 6.4e-74 282.0 238 67.6
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 1.9e-73 280.4 175 79.4
Cre02.g103850 Chlamydomonas reinhardtii HOM05D004138 ORTHO05D004898 2.4e-73 280.0 208 67.8
SMO367G0933 Selaginella moellendorffii HOM05D004138 ORTHO05D004898 2.1e-72 276.9 204 70.1
COL.COLO4_04735 Corchorus olitorius HOM05D004138 ORTHO05D004898 4.6e-72 275.8 163 83.4
Rhsim02G0024800 Rhododendron simsii HOM05D004138 ORTHO05D004898 6.0e-72 275.4 273 59.0
SEGI_10012 Sequoiadendron giganteum HOM05D004138 ORTHO05D004898 5.6e-70 268.9 159 83.6
MBI06_g26001_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 8.3e-66 255.0 259 57.9
HPP92_026352 Vanilla planifolia HOM05D004138 ORTHO05D004898 1.1e-65 254.6 224 63.8
Peaxi162Scf00092g01021 Petunia axillaris HOM05D004138 ORTHO05D004898 7.1e-65 251.9 142 87.3
MBI06_g37250_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 1.0e-63 248.1 218 63.8
AL7G43530 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 5.1e-63 245.7 158 78.5
arahy.Tifrunner.gnm1.ann1.PP7NHW Arachis hypogaea HOM05D004138 ORTHO05D004898 8.6e-63 245.0 185 71.9
AL7G43460 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 2.8e-61 240.0 156 77.6
Sabra10G0055200 Salix brachista HOM05D004138 ORTHO05D004898 2.8e-61 240.0 247 56.7
CDE10G0981 Ceratophyllum demersum HOM05D000366 ORTHO05D000437 2.2e-58 230.3 231 57.1
Lj2g0010828 Lotus japonicus HOM05D004138 ORTHO05D004898 1.7e-55 220.7 157 72.0
AagrBONN_evm.TU.Sc2ySwM_228.3076 Anthoceros agrestis HOM05D004138 ORTHO05D004898 4.3e-54 216.1 164 66.5
Haze_27397 Corylus avellana HOM05D004138 ORTHO05D004898 3.4e-51 206.5 201 47.3
Ah.04g154580 Amaranthus hybridus HOM05D004138 ORTHO05D004898 5.4e-49 199.1 179 61.5
ATR0661G018 Amborella trichopoda HOM05D004138 ORTHO05D004898 5.4e-49 199.1 133 78.2
Sabra08G0116300 Salix brachista HOM05D004138 ORTHO05D004898 6.0e-48 195.7 324 41.0
SHI00436 Sapria himalayana HOM05D004138 ORTHO05D004898 1.8e-39 167.5 146 60.3
PRCOL_00007017 Prasinoderma coloniale HOM05D004138 ORTHO05D004898 2.5e-33 147.1 187 41.2
MCO15G615 Micromonas commoda HOM05D004138 ORTHO05D004898 2.7e-32 143.7 194 40.7
Psat4g223320 Pisum sativum HOM05D004138 ORTHO05D004898 2.5e-30 137.1 136 59.6
Actinidia40147 Actinidia chinensis HOM05D004138 ORTHO05D004898 1.6e-29 134.4 79 83.5
Cfa024592 Carpinus fangiana HOM05D004138 ORTHO05D004898 2.1e-29 134.0 210 38.6
arahy.Tifrunner.gnm1.ann1.UX9Z2U Arachis hypogaea HOM05D004138 ORTHO05D004898 2.4e-20 104.0 69 75.4
arahy.Tifrunner.gnm1.ann1.J4BC6Z Arachis hypogaea HOM05D004138 ORTHO05D004898 4.1e-20 103.2 69 75.4
Medtr8g045710 Medicago truncatula HOM05D004138 ORTHO05D004898 2.7e-16 90.5 66 72.7
Rhsim02G0025000 Rhododendron simsii HOM05D004138 ORTHO05D004898 3.6e-16 90.1 138 43.5
Actinidia40148 Actinidia chinensis HOM05D004138 ORTHO05D004898 1.0e-15 88.6 84 51.2
CSS0002625 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 6.5e-10 69.3 36 88.9
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 6.5e-10 69.3 40 80.0
AL5G12050 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 8.5e-10 68.9 40 80.0
CARHR221520 Cardamine hirsuta HOM05D004138 ORTHO05D004898 2.5e-09 67.4 41 78.0
arahy.Tifrunner.gnm1.ann1.RWV13Y Arachis hypogaea HOM05D000351 ORTHO05D018478 2.1e-08 64.3 36 80.6
Medtr1g071390 Medicago truncatula HOM05D004138 ORTHO05D004898 2.1e-08 64.3 125 35.2
Rhsim08G0128300 Rhododendron simsii HOM05D004138 ORTHO05D339665 2.3e-07 60.8 114 35.1
CSS0029286 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 3.9e-07 60.1 42 69.0
CSS0040239 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 2.6e-06 57.4 34 79.4


User provided reference genes

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