Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00810 Corylus avellana HOM05D001246 ORTHO05D164901 3.9e-67 258.1 136 100.0
Haze_16898 Corylus avellana HOM05D001246 ORTHO05D002100 1.0e-14 84.0 53 83.0
Cfa021505 Carpinus fangiana HOM05D001246 ORTHO05D002100 2.2e-14 82.8 53 81.1
CiPaw.02G174200 Carya illinoinensis HOM05D001246 ORTHO05D002100 3.9e-11 72.0 53 73.6
CiPaw.01G273400 Carya illinoinensis HOM05D001246 ORTHO05D002100 5.1e-11 71.6 53 71.7
Potri.008G040500 Populus trichocarpa HOM05D001246 ORTHO05D002100 6.7e-11 71.2 55 67.3
Dinv11779 Davidia involucrata HOM05D001246 ORTHO05D002100 1.5e-10 70.1 53 69.8
Sabra08G0027600 Salix brachista HOM05D001246 ORTHO05D002100 2.0e-10 69.7 55 65.5
Sabra10G0171600 Salix brachista HOM05D001246 ORTHO05D002100 3.3e-10 68.9 55 65.5
Prupe.2G214300 Prunus persica HOM05D001246 ORTHO05D002100 4.4e-10 68.6 55 69.1
Potri.010G221700 Populus trichocarpa HOM05D001246 ORTHO05D002100 5.7e-10 68.2 55 65.5
CsaV3_5G036350 Cucumis sativus L. HOM05D001246 ORTHO05D002100 7.4e-10 67.8 54 70.4
Gohir.D04G003300 Gossypium hirsutum HOM05D001246 ORTHO05D002100 7.4e-10 67.8 48 75.0
Gorai.012G004400 Gossypium raimondii HOM05D001246 ORTHO05D002100 7.4e-10 67.8 48 75.0
QL08p056049 Quercus lobata HOM05D001246 ORTHO05D002100 9.7e-10 67.4 52 71.2
ClCG05G020960 Citrullus lanatus HOM05D001246 ORTHO05D002100 1.3e-09 67.0 52 67.3
MELO3C012433.2 Cucumis melo HOM05D001246 ORTHO05D002100 1.3e-09 67.0 54 68.5
Oeu027480.1 Olea europaea HOM05D001246 ORTHO05D002100 1.3e-09 67.0 57 68.4
MD01G1108800 Malus domestica HOM05D001246 ORTHO05D002100 1.7e-09 66.6 57 66.7
Sed0005393 Sechium edule HOM05D001246 ORTHO05D002100 1.7e-09 66.6 54 68.5
Sc09g0006450 Simmondsia chinensis HOM05D001246 ORTHO05D002100 1.7e-09 66.6 48 68.8
arahy.Tifrunner.gnm1.ann1.W7LA7X Arachis hypogaea HOM05D001246 ORTHO05D002100 2.2e-09 66.2 75 53.3
Gohir.A05G412700 Gossypium hirsutum HOM05D001246 ORTHO05D002100 2.2e-09 66.2 48 72.9
Gohir.A10G206300 Gossypium hirsutum HOM05D001246 ORTHO05D002100 2.2e-09 66.2 48 72.9
Gohir.D10G214400 Gossypium hirsutum HOM05D001246 ORTHO05D002100 2.2e-09 66.2 48 72.9
Gorai.011G240000 Gossypium raimondii HOM05D001246 ORTHO05D002100 2.2e-09 66.2 48 72.9
Sed0021736 Sechium edule HOM05D001246 ORTHO05D002100 2.8e-09 65.9 48 68.8
CSS0037036 Camellia sinensis var. sinensis HOM05D001246 ORTHO05D002100 3.7e-09 65.5 46 73.9
Dinv31328 Davidia involucrata HOM05D001246 ORTHO05D002100 3.7e-09 65.5 53 64.2
Duzib128G1776 Durio zibethinus HOM05D001246 ORTHO05D002100 3.7e-09 65.5 48 72.9
Thecc.10G072800 Theobroma cacao HOM05D001246 ORTHO05D002100 3.7e-09 65.5 48 72.9
Duzib114G0874 Durio zibethinus HOM05D001246 ORTHO05D002100 4.8e-09 65.1 48 70.8
Nn2g13089 Nelumbo nucifera HOM05D001246 ORTHO05D002100 4.8e-09 65.1 53 62.3
TWI38G1451 Tripterygium wilfordii HOM05D001246 ORTHO05D002100 6.3e-09 64.7 48 70.8
MD07G1175100 Malus domestica HOM05D001246 ORTHO05D002100 8.2e-09 64.3 58 63.8
TAR636G0601 Trochodendron aralioides HOM05D001246 ORTHO05D002100 1.1e-08 63.9 48 68.8
TAR636G3665 Trochodendron aralioides HOM05D001246 ORTHO05D002100 1.1e-08 63.9 48 68.8
arahy.Tifrunner.gnm1.ann1.KDTA1N Arachis hypogaea HOM05D001246 ORTHO05D002100 1.8e-08 63.2 75 52.0
Nn2g10775 Nelumbo nucifera HOM05D001246 ORTHO05D002100 1.8e-08 63.2 45 73.3
Oeu033850.2 Olea europaea HOM05D001246 ORTHO05D002100 1.8e-08 63.2 50 72.0
MSTRG.9183 Avicennia marina HOM05D001246 ORTHO05D002100 2.4e-08 62.8 57 63.2
Ciclev10031470m.g Citrus clementina HOM05D001246 ORTHO05D002100 2.4e-08 62.8 82 46.3
RcHm_v2.0_Chr1g0363481 Rosa chinensis HOM05D001246 ORTHO05D002100 2.4e-08 62.8 45 71.1
ClCG08G007460 Citrullus lanatus HOM05D001246 ORTHO05D002100 3.1e-08 62.4 48 66.7
MELO3C019791.2 Cucumis melo HOM05D001246 ORTHO05D002100 3.1e-08 62.4 48 66.7
FvH4_7g19660 Fragaria vesca HOM05D001246 ORTHO05D002100 3.1e-08 62.4 54 64.8
FAN03G1090 Fragaria x ananassa HOM05D001246 ORTHO05D002100 3.1e-08 62.4 54 64.8
FAN06G3989 Fragaria x ananassa HOM05D001246 ORTHO05D002100 3.1e-08 62.4 54 64.8
FAN10G1448 Fragaria x ananassa HOM05D001246 ORTHO05D002100 3.1e-08 62.4 54 64.8
Lj5g0027760 Lotus japonicus HOM05D001246 ORTHO05D002100 4.1e-08 62.0 56 60.7
MBI10_g18715_MAGBIO Magnolia biondii HOM05D001246 ORTHO05D002100 4.1e-08 62.0 47 68.1
Nitab4.5_0001029g0020 Nicotiana tabacum HOM05D001246 ORTHO05D002100 4.1e-08 62.0 54 64.8
Nitab4.5_0003144g0010 Nicotiana tabacum HOM05D001246 ORTHO05D002100 4.1e-08 62.0 49 69.4
Sed0021392 Sechium edule HOM05D001246 ORTHO05D002100 4.1e-08 62.0 48 64.6
Manes.07G101200 Manihot esculenta HOM05D001246 ORTHO05D002100 5.3e-08 61.6 55 63.6
Actinidia38275 Actinidia chinensis HOM05D001246 ORTHO05D002100 7.0e-08 61.2 49 65.3
COL.COLO4_23688 Corchorus olitorius HOM05D001246 ORTHO05D002100 7.0e-08 61.2 48 68.8
FAN01G2314 Fragaria x ananassa HOM05D001246 ORTHO05D002100 7.0e-08 61.2 56 60.7
Medtr0368s0010 Medicago truncatula HOM05D001246 ORTHO05D002100 7.0e-08 61.2 54 63.0
Medtr1g095165 Medicago truncatula HOM05D001246 ORTHO05D002100 7.0e-08 61.2 54 63.0
Psat6g184320 Pisum sativum HOM05D001246 ORTHO05D002100 7.0e-08 61.2 54 63.0
arahy.Tifrunner.gnm1.ann1.PPIL2T Arachis hypogaea HOM05D001246 ORTHO05D002100 9.1e-08 60.8 57 63.2
arahy.Tifrunner.gnm1.ann1.Q4J3I9 Arachis hypogaea HOM05D001246 ORTHO05D002100 9.1e-08 60.8 57 63.2
Ca_10572_v3 Cicer arietinum L. HOM05D001246 ORTHO05D002100 9.1e-08 60.8 57 64.9
Ca_29595_v3 Cicer arietinum L. HOM05D001246 ORTHO05D002100 9.1e-08 60.8 57 64.9
Lalb_Chr02g0142161 Lupinus albus HOM05D001246 ORTHO05D002100 9.1e-08 60.8 54 63.0
Cpa.g.sc53.72 Carica papaya HOM05D001246 ORTHO05D002100 1.2e-07 60.5 53 66.0
Peaxi162Scf00156g01213 Petunia axillaris HOM05D001246 ORTHO05D002100 1.2e-07 60.5 57 64.9
Phvul.007G094300 Phaseolus vulgaris HOM05D001246 ORTHO05D002100 1.2e-07 60.5 54 61.1
Hund12042 Selenicereus undatus HOM05D001246 ORTHO05D002100 1.2e-07 60.5 47 70.2
PGSC0003DMG400023463 Solanum tuberosum HOM05D001246 ORTHO05D002100 1.2e-07 60.5 57 64.9
TAR623G1514 Trochodendron aralioides HOM05D001246 ORTHO05D002100 1.2e-07 60.5 53 60.4
Atru.chr12.741 Acer truncatum HOM05D001246 ORTHO05D002100 1.5e-07 60.1 55 65.5
Atru.chr12.763 Acer truncatum HOM05D001246 ORTHO05D002100 1.5e-07 60.1 55 65.5
MSTRG.27457 Avicennia marina HOM05D001246 ORTHO05D002100 2.0e-07 59.7 50 68.0
TPR.G1906 Trifolium pratense HOM05D001246 ORTHO05D002100 2.0e-07 59.7 54 61.1
PGR142G1771 Punica granatum HOM05D001246 ORTHO05D002100 2.6e-07 59.3 43 69.8
SalBow4G3203 Salvia bowleyana HOM05D001246 ORTHO05D002100 2.6e-07 59.3 49 67.3
Duzib106G0841 Durio zibethinus HOM05D001246 ORTHO05D002100 3.4e-07 58.9 45 68.9
Lalb_Chr21g0306061 Lupinus albus HOM05D001246 ORTHO05D002100 3.4e-07 58.9 54 61.1
MSTRG.365 Avicennia marina HOM05D001246 ORTHO05D002100 4.5e-07 58.5 57 59.6
Glyma.10G211300 Glycine max HOM05D001246 ORTHO05D002100 4.5e-07 58.5 55 61.8
SGA_v2.0_scaffold62G21423 Striga asiatica HOM05D001246 ORTHO05D002100 4.5e-07 58.5 50 66.0
TWI63G0982 Tripterygium wilfordii HOM05D001246 ORTHO05D002100 4.5e-07 58.5 53 64.2
FAN10G1474 Fragaria x ananassa HOM05D001246 ORTHO05D002100 5.9e-07 58.2 42 69.0
VMungo0720G0864 Vigna mungo HOM05D001246 ORTHO05D002100 5.9e-07 58.2 54 61.1
Solyc05g056030.3 Solanum lycopersicum HOM05D001246 ORTHO05D002100 7.7e-07 57.8 56 64.3
Sopen05g034440 Solanum pennellii HOM05D001246 ORTHO05D002100 7.7e-07 57.8 56 64.3
EL10Ac2g03250 Beta vulgaris HOM05D001246 ORTHO05D002100 1.0e-06 57.4 46 69.6
Aqoxy1G01247 Aquilegia oxysepala HOM05D001246 ORTHO05D002100 1.3e-06 57.0 52 57.7
Nitab4.5_0000476g0150 Nicotiana tabacum HOM05D001246 ORTHO05D002100 1.3e-06 57.0 47 70.2
Glyma.20G179600 Glycine max HOM05D001246 ORTHO05D002100 1.7e-06 56.6 54 59.3
Peaxi162Scf00747g00120 Petunia axillaris HOM05D001246 ORTHO05D002100 1.7e-06 56.6 54 64.8
CSS0001595 Camellia sinensis var. sinensis HOM05D001246 ORTHO05D002100 2.2e-06 56.2 49 67.3
Migut.F01775 Erythranthe guttata HOM05D001246 ORTHO05D002100 2.2e-06 56.2 46 67.4
Lsat_1_v5_gn_9_69360 Lactuca sativa HOM05D001246 ORTHO05D002100 2.2e-06 56.2 45 64.4
Lalb_Chr06g0162281 Lupinus albus HOM05D001246 ORTHO05D002100 2.2e-06 56.2 50 68.0
PSO339G3133 Papaver somniferum HOM05D001246 ORTHO05D002100 2.2e-06 56.2 54 59.3
Manes.10G045300 Manihot esculenta HOM05D001246 ORTHO05D002100 3.8e-06 55.5 55 60.0
Nitab4.5_0013086g0010 Nicotiana tabacum HOM05D001246 ORTHO05D002100 3.8e-06 55.5 50 64.0
SalBow3G0542 Salvia bowleyana HOM05D001246 ORTHO05D002100 3.8e-06 55.5 57 59.6
Ah.16g106380 Amaranthus hybridus HOM05D001246 ORTHO05D002100 5.0e-06 55.1 59 59.3
ATR0115G005 Amborella trichopoda HOM05D001246 ORTHO05D002100 5.0e-06 55.1 48 56.2
HanXRQChr12g0368831 Helianthus annuus HOM05D001246 ORTHO05D002100 5.0e-06 55.1 40 65.0
SGA_v2.0_scaffold341G49366 Striga asiatica HOM05D001246 ORTHO05D002100 6.5e-06 54.7 83 45.8
vmacro04875 Vaccinium macrocarpon HOM05D001246 ORTHO05D002100 6.5e-06 54.7 67 53.7
Lsat_1_v5_gn_2_114320 Lactuca sativa HOM05D001246 ORTHO05D002100 8.5e-06 54.3 45 60.0
THA.LOC104806083 Tarenaya hassleriana HOM05D001246 ORTHO05D002100 8.5e-06 54.3 79 46.8
vmacro13567 Vaccinium macrocarpon HOM05D001246 ORTHO05D011584 8.5e-06 54.3 42 66.7


User provided reference genes

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