Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00772 Corylus avellana HOM05D003727 ORTHO05D004731 1.6e-219 765.8 377 100.0
Cfa015726 Carpinus fangiana HOM05D003727 ORTHO05D004731 9.0e-207 723.4 377 95.2
Duzib151G0200 Durio zibethinus HOM05D003727 ORTHO05D004731 1.7e-197 692.6 377 89.1
Thecc.04G312500 Theobroma cacao HOM05D003727 ORTHO05D004731 3.8e-197 691.4 377 89.4
QL06p014168 Quercus lobata HOM05D003727 ORTHO05D004731 4.6e-195 684.5 378 88.9
CiPaw.01G129700 Carya illinoinensis HOM05D003727 ORTHO05D004731 7.9e-195 683.7 377 89.4
Gohir.A01G036300 Gossypium hirsutum HOM05D003727 ORTHO05D004731 6.7e-194 680.6 377 88.6
Gohir.D01G023600 Gossypium hirsutum HOM05D003727 ORTHO05D004731 2.0e-193 679.1 377 88.9
RcHm_v2.0_Chr4g0427421 Rosa chinensis HOM05D003727 ORTHO05D004731 1.3e-192 676.4 377 88.9
FvH4_4g21480 Fragaria vesca HOM05D003727 ORTHO05D004731 8.2e-192 673.7 377 88.1
FAN12G0484 Fragaria x ananassa HOM05D003727 ORTHO05D004731 8.2e-192 673.7 377 88.1
Gorai.002G032100 Gossypium raimondii HOM05D003727 ORTHO05D004731 8.2e-192 673.7 377 87.8
arahy.Tifrunner.gnm1.ann1.EP383Y Arachis hypogaea HOM05D003727 ORTHO05D004731 6.9e-191 670.6 377 87.0
Prupe.1G105800 Prunus persica HOM05D003727 ORTHO05D004731 1.2e-190 669.8 377 87.5
Potri.010G002000 Populus trichocarpa HOM05D003727 ORTHO05D004731 2.0e-190 669.1 377 87.0
THA.LOC104798546 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 2.0e-190 669.1 378 86.8
THA.LOC104802717 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 2.0e-190 669.1 378 86.8
Sabra10G0001600 Salix brachista HOM05D003727 ORTHO05D004731 4.5e-190 667.9 377 87.0
ClCG04G007480 Citrullus lanatus HOM05D003727 ORTHO05D004731 5.9e-190 667.5 378 87.0
CsaV3_4G025780 Cucumis sativus L. HOM05D003727 ORTHO05D004731 5.9e-190 667.5 378 87.0
FAN17G0291 Fragaria x ananassa HOM05D003727 ORTHO05D004731 1.7e-189 666.0 377 87.0
Manes.03G211600 Manihot esculenta HOM05D003727 ORTHO05D004731 2.2e-189 665.6 377 85.1
Thhalv10020969m.g Eutrema salsugineum HOM05D003727 ORTHO05D004731 2.9e-189 665.2 378 86.5
Lj6g0008986 Lotus japonicus HOM05D003727 ORTHO05D004731 2.9e-189 665.2 377 85.7
TWI73G0221 Tripterygium wilfordii HOM05D003727 ORTHO05D004731 5.0e-189 664.5 377 86.7
Glyma.09G079000 Glycine max HOM05D003727 ORTHO05D004731 8.5e-189 663.7 377 86.5
Ciclev10005215m.g Citrus clementina HOM05D003727 ORTHO05D004731 1.4e-188 662.9 377 86.5
Glyma.15G188500 Glycine max HOM05D003727 ORTHO05D004731 1.4e-188 662.9 377 87.0
Sp3g05430 Schrenkiella parvula HOM05D003727 ORTHO05D004731 1.4e-188 662.9 378 86.0
VMungo1309G1883 Vigna mungo HOM05D003727 ORTHO05D004731 4.2e-188 661.4 377 86.5
Phvul.009G219900 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 5.5e-188 661.0 377 86.7
PGR004G0380 Punica granatum HOM05D003727 ORTHO05D004731 9.4e-188 660.2 393 84.0
GSVIVG01017684001 Vitis vinifera HOM05D003727 ORTHO05D004731 1.6e-187 659.4 377 85.1
Lalb_Chr23g0276061 Lupinus albus HOM05D003727 ORTHO05D004731 3.6e-187 658.3 377 85.9
C03p42180 Brassica napus HOM05D003727 ORTHO05D004731 4.7e-187 657.9 378 86.8
Gohir.A10G176400 Gossypium hirsutum HOM05D003727 ORTHO05D004731 7.9e-187 657.1 377 85.1
BraA03t12649Z Brassica rapa HOM05D003727 ORTHO05D004731 1.0e-186 656.8 378 86.5
Gohir.D10G183100 Gossypium hirsutum HOM05D003727 ORTHO05D004731 1.0e-186 656.8 377 85.1
Gorai.011G205200 Gossypium raimondii HOM05D003727 ORTHO05D004731 1.0e-186 656.8 377 85.1
THA.LOC104818862 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 1.0e-186 656.8 378 84.7
BolC3t16499H Brassica oleracea HOM05D003727 ORTHO05D004731 1.8e-186 656.0 378 86.5
COL.COLO4_34520 Corchorus olitorius HOM05D003727 ORTHO05D004731 1.8e-186 656.0 350 90.9
Sed0005057 Sechium edule HOM05D003727 ORTHO05D004731 1.8e-186 656.0 378 84.9
Carub.0003s0594 Capsella rubella HOM05D003727 ORTHO05D004731 2.3e-186 655.6 378 85.4
CsaV3_3G015500 Cucumis sativus L. HOM05D003727 ORTHO05D004731 2.3e-186 655.6 378 85.2
Cpa.g.sc146.27 Carica papaya HOM05D003727 ORTHO05D004731 5.1e-186 654.4 378 86.2
arahy.Tifrunner.gnm1.ann1.BN91E6 Arachis hypogaea HOM05D003727 ORTHO05D004731 1.5e-185 652.9 416 79.1
ClCG05G006850 Citrullus lanatus HOM05D003727 ORTHO05D004731 1.5e-185 652.9 378 85.7
MD13G1140800 Malus domestica HOM05D003727 ORTHO05D004731 2.6e-185 652.1 377 85.4
AT3G06483 Arabidopsis thaliana HOM05D003727 ORTHO05D004731 7.4e-185 650.6 378 84.9
Aa31LG5G17020 Aethionema arabicum HOM05D003727 ORTHO05D004731 9.7e-185 650.2 378 83.9
CARHR081010 Cardamine hirsuta HOM05D003727 ORTHO05D004731 1.3e-184 649.8 378 85.2
A03p34710 Brassica napus HOM05D003727 ORTHO05D004731 1.7e-184 649.4 402 81.6
CiPaw.02G069500 Carya illinoinensis HOM05D003727 ORTHO05D004731 3.7e-184 648.3 354 88.1
Rhsim04G0248100 Rhododendron simsii HOM05D003727 ORTHO05D004731 1.4e-183 646.4 379 85.0
THA.LOC104827107 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 1.4e-183 646.4 376 85.1
CANSAT78G0237 Cannabis sativa HOM05D003727 ORTHO05D004731 1.2e-182 643.3 373 85.0
Ca_02357_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 2.0e-182 642.5 377 83.8
Lalb_Chr11g0073551 Lupinus albus HOM05D003727 ORTHO05D004731 3.5e-182 641.7 377 83.8
Ca_07250_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 4.5e-182 641.3 371 84.6
PSO170G4280 Papaver somniferum HOM05D003727 ORTHO05D004731 7.7e-182 640.6 377 83.0
Sed0027316 Sechium edule HOM05D003727 ORTHO05D004731 7.7e-182 640.6 378 82.3
CSS0027704 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 1.3e-181 639.8 379 84.4
PSO357G0471 Papaver somniferum HOM05D003727 ORTHO05D004731 2.2e-181 639.0 377 82.8
Atru.chr4.3143 Acer truncatum HOM05D003727 ORTHO05D004731 5.0e-181 637.9 349 88.5
Eucgr.H04122 Eucalyptus grandis HOM05D003727 ORTHO05D004731 6.5e-181 637.5 350 87.1
DCAR_023405 Daucus carota HOM05D003727 ORTHO05D004731 1.9e-180 636.0 377 82.8
BcaC05g30021 Brassica carinata HOM05D003727 ORTHO05D004731 2.5e-180 635.6 369 84.0
TAR365G0780 Trochodendron aralioides HOM05D003727 ORTHO05D004731 2.5e-180 635.6 377 83.3
TPR.G39591 Trifolium pratense HOM05D003727 ORTHO05D004731 3.2e-180 635.2 377 82.5
Oeu022704.1 Olea europaea HOM05D003727 ORTHO05D004731 4.2e-180 634.8 379 84.4
Solyc01g057210.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 4.2e-180 634.8 380 82.6
Medtr2g045490 Medicago truncatula HOM05D003727 ORTHO05D004731 5.5e-180 634.4 377 82.0
Aqoxy7G02168 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 7.2e-180 634.0 377 82.2
Sc25g0002190 Simmondsia chinensis HOM05D003727 ORTHO05D004731 7.2e-180 634.0 397 79.3
TPR.G15491 Trifolium pratense HOM05D003727 ORTHO05D004731 1.2e-179 633.3 371 83.3
Phvul.009G220000 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 2.1e-179 632.5 366 84.4
Sopen01g021750 Solanum pennellii HOM05D003727 ORTHO05D004731 2.1e-179 632.5 380 82.4
PGSC0003DMG400013068 Solanum tuberosum HOM05D003727 ORTHO05D004731 2.7e-179 632.1 380 82.4
BcaC05g29821 Brassica carinata HOM05D003727 ORTHO05D004731 3.6e-179 631.7 369 83.5
A05p41540 Brassica napus HOM05D003727 ORTHO05D004731 3.6e-179 631.7 369 83.5
C05p60740 Brassica napus HOM05D003727 ORTHO05D004731 3.6e-179 631.7 369 83.5
BolC5t34734H Brassica oleracea HOM05D003727 ORTHO05D004731 3.6e-179 631.7 369 83.5
BraA05t22875Z Brassica rapa HOM05D003727 ORTHO05D004731 3.6e-179 631.7 369 83.5
MSTRG.21742 Avicennia marina HOM05D003727 ORTHO05D004731 6.1e-179 630.9 377 82.0
Hma1.2p1_2234F.1_g317700 Hydrangea macrophylla HOM05D003727 ORTHO05D004731 6.1e-179 630.9 377 82.0
Medtr7g024460 Medicago truncatula HOM05D003727 ORTHO05D004731 1.8e-178 629.4 371 82.5
Psat3g179960 Pisum sativum HOM05D003727 ORTHO05D004731 3.0e-178 628.6 371 83.6
HanXRQChr07g0194351 Helianthus annuus HOM05D003727 ORTHO05D004731 6.7e-178 627.5 378 80.4
CAN.G179.19 Capsicum annuum HOM05D003727 ORTHO05D004731 9.7e-177 623.6 380 82.6
Nitab4.5_0001334g0060 Nicotiana tabacum HOM05D003727 ORTHO05D004731 9.7e-177 623.6 391 80.8
Hund12253 Selenicereus undatus HOM05D003727 ORTHO05D004731 1.3e-176 623.2 376 80.6
EL10Ac3g06260 Beta vulgaris HOM05D003727 ORTHO05D004731 2.8e-176 622.1 377 82.2
Aqoxy5G02791 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 4.8e-176 621.3 374 81.3
Nitab4.5_0004046g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 4.8e-176 621.3 380 82.4
Migut.N00003 Erythranthe guttata HOM05D003727 ORTHO05D004731 4.1e-175 618.2 377 80.4
Peaxi162Scf00126g01030 Petunia axillaris HOM05D003727 ORTHO05D004731 4.1e-175 618.2 380 81.3
Cc03_g00160 Coffea canephora HOM05D003727 ORTHO05D004731 7.0e-175 617.5 377 81.7
CSS0023101 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 1.2e-174 616.7 381 80.3
Lsat_1_v5_gn_6_70560 Lactuca sativa HOM05D003727 ORTHO05D004731 1.2e-174 616.7 377 80.1
Actinidia18506 Actinidia chinensis HOM05D003727 ORTHO05D004731 4.5e-174 614.8 350 85.7
MBI18_g09643_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 5.9e-174 614.4 378 79.9
Nitab4.5_0003998g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 2.9e-173 612.1 377 82.0
HanXRQChr05g0149271 Helianthus annuus HOM05D003727 ORTHO05D004731 5.0e-173 611.3 377 78.2
Psat1g017520 Pisum sativum HOM05D003727 ORTHO05D004731 5.2e-170 601.3 350 83.1
Nn3g21906 Nelumbo nucifera HOM05D003727 ORTHO05D004731 6.8e-170 600.9 381 80.3
unitig_699.g19980 Utricularia gibba HOM05D003727 ORTHO05D004731 7.5e-169 597.4 377 76.9
Actinidia00296 Actinidia chinensis HOM05D003727 ORTHO05D004731 1.7e-168 596.3 377 81.2
CAN.G484.91 Capsicum annuum HOM05D003727 ORTHO05D004731 1.7e-168 596.3 378 78.6
Lj6A700T83 Lonicera japonica HOM05D003727 ORTHO05D004731 3.1e-167 592.0 377 77.7
ATR0796G219 Amborella trichopoda HOM05D003727 ORTHO05D004731 4.1e-167 591.7 376 78.7
GSVIVG01031319001 Vitis vinifera HOM05D003727 ORTHO05D004731 4.1e-167 591.7 377 77.5
vmacro08010 Vaccinium macrocarpon HOM05D003727 ORTHO05D004731 5.9e-166 587.8 375 79.5
Peaxi162Scf00668g00119 Petunia axillaris HOM05D003727 ORTHO05D004731 1.7e-165 586.3 376 78.2
Glyma.17G040500 Glycine max HOM05D003727 ORTHO05D004731 2.2e-165 585.9 369 79.1
SalBow8G0722 Salvia bowleyana HOM05D003727 ORTHO05D004731 1.5e-164 583.2 367 78.5
HPP92_001184 Vanilla planifolia HOM05D003727 ORTHO05D004731 3.2e-164 582.0 377 76.9
Lj3A840G128 Lonicera japonica HOM05D003727 ORTHO05D004731 7.2e-164 580.9 367 78.5
PSO210G4254 Papaver somniferum HOM05D003727 ORTHO05D004731 2.1e-163 579.3 375 74.4
ECA233G2414 Erigeron canadensis HOM05D003727 ORTHO05D004731 2.7e-163 578.9 377 76.1
Nitab4.5_0000895g0180 Nicotiana tabacum HOM05D003727 ORTHO05D004731 2.7e-163 578.9 352 82.1
PSO761G0171 Papaver somniferum HOM05D003727 ORTHO05D004731 1.8e-162 576.2 375 73.9
SGA_v2.0_scaffold157G37383 Striga asiatica HOM05D003727 ORTHO05D004731 1.8e-162 576.2 440 68.4
AUR62002558 Chenopodium quinoa HOM05D003727 ORTHO05D004731 3.0e-162 575.5 350 81.7
arahy.Tifrunner.gnm1.ann1.E3SS24 Arachis hypogaea HOM05D003727 ORTHO05D004731 7.5e-161 570.9 374 75.1
MBI19_g32733_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 2.2e-160 569.3 378 74.9
VMungo1215G3329 Vigna mungo HOM05D003727 ORTHO05D004731 6.3e-160 567.8 367 78.7
CDE02G0044 Ceratophyllum demersum HOM05D003727 ORTHO05D002799 8.3e-160 567.4 365 75.9
Solyc12g098930.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 5.4e-159 564.7 378 74.9
Sopen12g033680 Solanum pennellii HOM05D003727 ORTHO05D004731 1.2e-158 563.5 378 74.9
Os07g0637300 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 1.1e-156 557.0 371 74.1
PGSC0003DMG400004685 Solanum tuberosum HOM05D003727 ORTHO05D004731 3.6e-155 552.0 378 73.5
Zm00001eb018000 Zea mays HOM05D003727 ORTHO05D004731 8.0e-155 550.8 371 72.2
Zm00001eb328730 Zea mays HOM05D003727 ORTHO05D004731 1.2e-153 547.0 371 72.2
Os03g0370000 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 2.9e-152 542.3 369 72.4
SGA_v2.0_scaffold157G37388 Striga asiatica HOM05D003727 ORTHO05D004731 2.9e-152 542.3 374 73.8
SHI00051 Sapria himalayana HOM05D003727 ORTHO05D004731 1.7e-149 533.1 404 70.5
SMO115G0066 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 2.5e-148 529.3 377 67.1
Mapoly0183s0013 Marchantia polymorpha HOM05D003727 ORTHO05D004731 4.0e-146 521.9 378 68.0
AagrBONN_evm.TU.Sc2ySwM_362.1196 Anthoceros agrestis HOM05D003727 ORTHO05D004731 2.9e-144 515.8 377 66.3
Pp3c9_2880 Physcomitrium patens HOM05D003727 ORTHO05D004731 6.4e-144 514.6 379 66.2
Pp3c15_8270 Physcomitrium patens HOM05D003727 ORTHO05D004731 1.9e-143 513.1 376 67.0
CDE01G0062 Ceratophyllum demersum HOM05D003727 ORTHO05D004731 2.7e-142 509.2 368 67.9
Lj4g0016505 Lotus japonicus HOM05D003727 ORTHO05D004731 1.1e-140 503.8 379 69.1
MELO3C006749.2 Cucumis melo HOM05D003727 ORTHO05D004731 1.8e-138 496.5 280 85.7
MELO3C003205.2 Cucumis melo HOM05D003727 ORTHO05D004731 4.0e-138 495.4 281 86.8
SEGI_06820 Sequoiadendron giganteum HOM05D003727 ORTHO05D004731 5.2e-138 495.0 381 65.1
CBR_g238 Chara braunii HOM05D003727 ORTHO05D004731 2.9e-136 489.2 378 65.1
AL3G17510 Arabidopsis lyrata HOM05D003727 ORTHO05D004731 3.2e-135 485.7 284 85.6
Cre05.g241750 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 4.1e-135 485.3 377 64.2
ECA246G0694 Erigeron canadensis HOM05D003727 ORTHO05D004731 7.1e-135 484.6 332 73.8
Oeu037626.1 Olea europaea HOM05D003727 ORTHO05D004731 2.1e-134 483.0 295 81.7
Dinv29512 Davidia involucrata HOM05D003727 ORTHO05D004731 3.5e-134 482.3 279 83.5
TAR633G1110 Trochodendron aralioides HOM05D003727 ORTHO05D004731 1.3e-133 480.3 371 68.7
Nn4g25394 Nelumbo nucifera HOM05D003727 ORTHO05D004731 2.5e-132 476.1 290 80.0
unitig_8.g2888 Utricularia gibba HOM05D003727 ORTHO05D004731 6.8e-130 468.0 365 64.4
SGA_v2.0_scaffold64G22028 Striga asiatica HOM05D003727 ORTHO05D004731 1.1e-127 460.7 278 82.4
unitig_747.g21103 Utricularia gibba HOM05D003727 ORTHO05D004731 1.9e-124 449.9 334 68.9
MCO15G342 Micromonas commoda HOM05D003727 ORTHO05D004731 6.2e-123 444.9 395 57.5
Glyma.13G119800 Glycine max HOM05D003727 ORTHO05D004731 1.1e-119 434.1 282 78.7
Dinv18024 Davidia involucrata HOM05D003727 ORTHO05D004731 1.0e-117 427.6 238 86.6
SMO367G0119 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 1.3e-117 427.2 373 55.5
arahy.Tifrunner.gnm1.ann1.L2TMJG Arachis hypogaea HOM05D003727 ORTHO05D004731 5.6e-116 421.8 285 71.9
PRCOL_00006564 Prasinoderma coloniale HOM05D003727 ORTHO05D004731 1.3e-112 410.6 409 52.3
Zm00001eb394190 Zea mays HOM05D003727 ORTHO05D004731 1.2e-110 404.1 273 71.1
Cre06.g278451 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 7.9e-110 401.4 377 54.4
FAN07G0809 Fragaria x ananassa HOM05D003727 ORTHO05D004731 2.2e-96 356.7 198 87.4
Cc00_g15630 Coffea canephora HOM05D003727 ORTHO05D004731 6.3e-91 338.6 280 64.3
AUR62029978 Chenopodium quinoa HOM05D003727 ORTHO05D004731 6.5e-88 328.6 229 72.5
CSS0050306 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 1.2e-86 324.3 197 79.2
MD16G1136800 Malus domestica HOM05D003727 ORTHO05D004731 3.6e-86 322.8 184 85.9
BcaC08g45280 Brassica carinata HOM05D003727 ORTHO05D004731 3.7e-75 286.2 171 83.6
vmacro06806 Vaccinium macrocarpon HOM05D003727 ORTHO05D426773 5.3e-58 229.2 268 53.0
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 3.2e-47 193.4 379 32.2
Glyma.14G127500 Glycine max HOM05D003727 ORTHO05D004731 1.2e-44 184.9 113 82.3
Cre06.g252300 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D034196 6.3e-43 179.1 448 28.3
Zm00001eb392210 Zea mays HOM05D003727 ORTHO05D444991 2.3e-40 170.6 119 68.9
Zm00001eb394790 Zea mays HOM05D003727 ORTHO05D441672 1.1e-39 168.3 147 61.2
Zm00001eb400710 Zea mays HOM05D003727 ORTHO05D445430 5.6e-39 166.0 119 67.2
Cfa023761 Carpinus fangiana HOM05D003727 ORTHO05D034196 1.2e-36 158.3 410 25.9
Lsat_1_v5_gn_5_23680 Lactuca sativa HOM05D003727 ORTHO05D231959 1.1e-34 151.8 115 63.5
Cfa027032 Carpinus fangiana HOM05D003727 ORTHO05D122316 4.6e-33 146.4 323 31.0
DCAR_023404 Daucus carota HOM05D002877 ORTHO05D003248 1.3e-32 144.8 84 79.8
VMungo0251G3273 Vigna mungo HOM05D003727 ORTHO05D000132 9.2e-10 68.9 49 73.5
vmacro06805 Vaccinium macrocarpon HOM05D003727 ORTHO05D426993 3.0e-08 63.9 59 59.3


User provided reference genes

Program Settings