Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00525 Corylus avellana HOM05D003597 ORTHO05D004420 1.1e-175 619.8 307 100.0
Cfa015958 Carpinus fangiana HOM05D003597 ORTHO05D004420 2.1e-97 359.8 184 97.3
CiPaw.05G229100 Carya illinoinensis HOM05D003597 ORTHO05D004420 1.1e-77 294.3 209 74.6
QL12p035319 Quercus lobata HOM05D003597 ORTHO05D004420 3.2e-77 292.7 184 82.1
Prupe.1G506100 Prunus persica HOM05D003597 ORTHO05D004420 2.9e-70 269.6 186 71.0
Thecc.08G116700 Theobroma cacao HOM05D003597 ORTHO05D004420 8.7e-67 258.1 188 72.9
RcHm_v2.0_Chr7g0240911 Rosa chinensis HOM05D003597 ORTHO05D004420 1.1e-66 257.7 186 67.7
COL.COLO4_03393 Corchorus olitorius HOM05D003597 ORTHO05D004420 3.7e-65 252.7 188 71.8
Cpa.g.c31003 Carica papaya HOM05D003597 ORTHO05D004420 6.3e-65 251.9 172 75.6
MD08G1173200 Malus domestica HOM05D003597 ORTHO05D004420 6.3e-65 251.9 187 69.5
FvH4_5g38940 Fragaria vesca HOM05D003597 ORTHO05D004420 8.2e-65 251.5 186 67.2
Potri.002G089400 Populus trichocarpa HOM05D003597 ORTHO05D004420 2.4e-64 250.0 186 71.0
Phvul.009G025800 Phaseolus vulgaris HOM05D003597 ORTHO05D004420 5.3e-64 248.8 180 70.0
Potri.005G171800 Populus trichocarpa HOM05D003597 ORTHO05D004420 5.3e-64 248.8 186 70.4
VMungo1309G0254 Vigna mungo HOM05D003597 ORTHO05D004420 5.3e-64 248.8 180 70.0
FAN18G1206 Fragaria x ananassa HOM05D003597 ORTHO05D004420 6.9e-64 248.4 186 66.7
Sabra05G0129300 Salix brachista HOM05D003597 ORTHO05D004420 1.5e-63 247.3 186 69.9
FAN13G2877 Fragaria x ananassa HOM05D003597 ORTHO05D004420 2.6e-63 246.5 186 66.1
Manes.18G072800 Manihot esculenta HOM05D003597 ORTHO05D004420 7.7e-63 245.0 192 69.3
ClCG03G009090 Citrullus lanatus HOM05D003597 ORTHO05D004420 1.0e-62 244.6 178 70.8
FAN04G0001 Fragaria x ananassa HOM05D003597 ORTHO05D004420 2.2e-62 243.4 183 65.6
Lalb_Chr08g0241721 Lupinus albus HOM05D003597 ORTHO05D004420 5.0e-62 242.3 180 67.8
Duzib093G1782 Durio zibethinus HOM05D003597 ORTHO05D004420 2.5e-61 240.0 188 70.2
Glyma.06G108500 Glycine max HOM05D003597 ORTHO05D004420 4.2e-61 239.2 186 64.5
arahy.Tifrunner.gnm1.ann1.WJPD8A Arachis hypogaea HOM05D003597 ORTHO05D004420 5.5e-61 238.8 173 71.7
Gohir.A01G187600 Gossypium hirsutum HOM05D003597 ORTHO05D004420 7.2e-61 238.4 177 71.2
GSVIVG01008944001 Vitis vinifera HOM05D003597 ORTHO05D004420 7.2e-61 238.4 184 72.8
Gohir.D01G182100 Gossypium hirsutum HOM05D003597 ORTHO05D004420 9.4e-61 238.0 177 70.6
Gorai.002G220300 Gossypium raimondii HOM05D003597 ORTHO05D004420 2.7e-60 236.5 177 70.6
MELO3C022786.2 Cucumis melo HOM05D003597 ORTHO05D004420 4.6e-60 235.7 172 69.2
Duzib041G0227 Durio zibethinus HOM05D003597 ORTHO05D004420 4.6e-60 235.7 173 71.7
CsaV3_5G023530 Cucumis sativus L. HOM05D003597 ORTHO05D004420 6.1e-60 235.3 172 68.6
Glyma.04G253800 Glycine max HOM05D003597 ORTHO05D004420 6.1e-60 235.3 180 65.6
TPR.G32944 Trifolium pratense HOM05D003597 ORTHO05D004420 7.9e-60 235.0 182 67.6
CANSAT25G1161 Cannabis sativa HOM05D003597 ORTHO05D004420 1.0e-59 234.6 186 67.2
Ca_25762_v3 Cicer arietinum L. HOM05D003597 ORTHO05D004420 1.4e-59 234.2 182 66.5
Sabra02G0070400 Salix brachista HOM05D003597 ORTHO05D004420 1.4e-59 234.2 185 69.2
Sed0005676 Sechium edule HOM05D003597 ORTHO05D004420 1.8e-59 233.8 173 70.5
TWI36G0588 Tripterygium wilfordii HOM05D003597 ORTHO05D004420 2.3e-59 233.4 186 67.7
Atru.chr13.1317 Acer truncatum HOM05D003597 ORTHO05D004420 6.7e-59 231.9 183 67.8
Atru.chr13.1361 Acer truncatum HOM05D003597 ORTHO05D004420 6.7e-59 231.9 183 67.8
Medtr3g073320 Medicago truncatula HOM05D003597 ORTHO05D004420 1.5e-58 230.7 182 65.9
Lj1g0013609 Lotus japonicus HOM05D003597 ORTHO05D004420 2.0e-58 230.3 181 65.7
Gorai.010G047000 Gossypium raimondii HOM05D003597 ORTHO05D004420 1.3e-57 227.6 188 67.6
Gohir.D06G041800 Gossypium hirsutum HOM05D003597 ORTHO05D004420 1.7e-57 227.3 188 67.6
TWI12G1217 Tripterygium wilfordii HOM05D003597 ORTHO05D004420 2.2e-57 226.9 189 68.8
TWI56G1037 Tripterygium wilfordii HOM05D003597 ORTHO05D004420 2.4e-56 223.4 186 66.1
Gohir.A06G040800 Gossypium hirsutum HOM05D003597 ORTHO05D004420 4.1e-56 222.6 188 67.0
Aqoxy5G02474 Aquilegia oxysepala HOM05D003597 ORTHO05D004420 1.3e-54 217.6 174 68.4
MD15G1358500 Malus domestica HOM05D003597 ORTHO05D004420 1.7e-54 217.2 187 63.1
MBI03_g11136_MAGBIO Magnolia biondii HOM05D003597 ORTHO05D004420 5.5e-53 212.2 175 68.0
Ciclev10000027m.g Citrus clementina HOM05D003597 ORTHO05D004420 9.4e-53 211.5 184 62.5
TAR197G0005 Trochodendron aralioides HOM05D003597 ORTHO05D004420 1.6e-52 210.7 173 69.4
CSS0024515 Camellia sinensis var. sinensis HOM05D003597 ORTHO05D004420 4.7e-52 209.1 193 64.2
Hund27061 Selenicereus undatus HOM05D003597 ORTHO05D004420 7.9e-52 208.4 176 63.6
Rhsim06G0109200 Rhododendron simsii HOM05D003597 ORTHO05D004420 1.4e-51 207.6 186 64.0
SalBow7G0935 Salvia bowleyana HOM05D003597 ORTHO05D004420 1.4e-51 207.6 184 63.0
SalBow7G4807 Salvia bowleyana HOM05D003597 ORTHO05D004420 1.4e-51 207.6 184 63.0
Nitab4.5_0002496g0040 Nicotiana tabacum HOM05D003597 ORTHO05D004420 1.8e-51 207.2 187 63.1
Lalb_Chr17g0344031 Lupinus albus HOM05D003597 ORTHO05D004420 2.3e-51 206.8 178 62.4
Carub.0002s2470 Capsella rubella HOM05D003597 ORTHO05D004420 3.0e-51 206.5 183 62.3
Solyc11g013530.3 Solanum lycopersicum HOM05D003597 ORTHO05D004420 3.0e-51 206.5 187 63.6
Sopen11g008560 Solanum pennellii HOM05D003597 ORTHO05D004420 3.0e-51 206.5 187 63.6
Nitab4.5_0000051g0110 Nicotiana tabacum HOM05D003597 ORTHO05D004420 6.7e-51 205.3 187 63.1
PSO017G6492 Papaver somniferum HOM05D003597 ORTHO05D004420 1.5e-50 204.1 199 56.8
PSO170G0537 Papaver somniferum HOM05D003597 ORTHO05D004420 3.3e-50 203.0 198 56.6
DCAR_014282 Daucus carota HOM05D003597 ORTHO05D004420 4.4e-50 202.6 169 69.2
vmacro12529 Vaccinium macrocarpon HOM05D003597 ORTHO05D004420 5.7e-50 202.2 199 62.3
Migut.C01191 Erythranthe guttata HOM05D003597 ORTHO05D004420 2.8e-49 199.9 168 66.1
MBI06_g01044_MAGBIO Magnolia biondii HOM05D003597 ORTHO05D004420 2.8e-49 199.9 174 63.2
Sc01g0001560 Simmondsia chinensis HOM05D003597 ORTHO05D004420 1.8e-48 197.2 172 63.4
Thhalv10018012m.g Eutrema salsugineum HOM05D003597 ORTHO05D004420 5.3e-48 195.7 173 61.8
Cc00_g02330 Coffea canephora HOM05D003597 ORTHO05D004420 9.1e-48 194.9 184 57.6
AT1G77800 Arabidopsis thaliana HOM05D003597 ORTHO05D004420 1.6e-47 194.1 173 61.8
Nn5g27956 Nelumbo nucifera HOM05D003597 ORTHO05D004420 4.5e-47 192.6 173 62.4
AL2G38040 Arabidopsis lyrata HOM05D003597 ORTHO05D004420 7.7e-47 191.8 173 61.3
Actinidia23041 Actinidia chinensis HOM05D003597 ORTHO05D004420 1.0e-46 191.4 211 59.2
Aa31LG4G7900 Aethionema arabicum HOM05D003597 ORTHO05D004420 2.2e-46 190.3 173 58.4
SGA_v2.0_scaffold118G32437 Striga asiatica HOM05D003597 ORTHO05D004420 6.5e-46 188.7 183 59.6
Oeu043794.4 Olea europaea HOM05D003597 ORTHO05D004420 1.1e-45 188.0 183 59.0
THA.LOC104813639 Tarenaya hassleriana HOM05D003597 ORTHO05D004420 1.1e-45 188.0 172 60.5
AUR62023609 Chenopodium quinoa HOM05D003597 ORTHO05D004420 1.5e-45 187.6 176 59.7
THA.LOC104800176 Tarenaya hassleriana HOM05D003597 ORTHO05D004420 4.2e-45 186.0 172 60.5
Oeu030027.4 Olea europaea HOM05D003597 ORTHO05D004420 9.4e-45 184.9 186 59.1
Sp5g32980 Schrenkiella parvula HOM05D003597 ORTHO05D004420 9.4e-45 184.9 174 59.2
CAN.G255.18 Capsicum annuum HOM05D003597 ORTHO05D004420 1.2e-44 184.5 187 59.4
BcaB03g15920 Brassica carinata HOM05D003597 ORTHO05D004420 2.1e-44 183.7 181 56.4
AUR62004693 Chenopodium quinoa HOM05D003597 ORTHO05D004420 2.1e-44 183.7 176 59.7
MSTRG.25418 Avicennia marina HOM05D003597 ORTHO05D004420 3.6e-44 183.0 172 57.0
Eucgr.F03741 Eucalyptus grandis HOM05D003597 ORTHO05D004420 3.6e-44 183.0 173 58.4
HanXRQChr05g0150511 Helianthus annuus HOM05D003597 ORTHO05D004420 3.6e-44 183.0 179 57.5
EL10Ac1g00040 Beta vulgaris HOM05D003597 ORTHO05D004420 6.1e-44 182.2 180 58.9
arahy.Tifrunner.gnm1.ann1.Y09WXD Arachis hypogaea HOM05D003597 ORTHO05D004420 8.0e-44 181.8 139 69.1
A07p43090 Brassica napus HOM05D003597 ORTHO05D004420 1.4e-43 181.0 182 56.6
Ah.05g172620 Amaranthus hybridus HOM05D003597 ORTHO05D004420 8.8e-43 178.3 175 57.7
BcaB05g25080 Brassica carinata HOM05D003597 ORTHO05D004420 2.6e-42 176.8 173 56.6
DCAR_031233 Daucus carota HOM05D003597 ORTHO05D004420 2.6e-42 176.8 187 58.3
BcaC08g47623 Brassica carinata HOM05D003597 ORTHO05D004420 3.3e-42 176.4 174 56.9
C06p51740 Brassica napus HOM05D003597 ORTHO05D004420 3.3e-42 176.4 174 56.9
ECA246G2386 Erigeron canadensis HOM05D003597 ORTHO05D004420 3.3e-42 176.4 185 56.2
Peaxi162Scf00476g00039 Petunia axillaris HOM05D003597 ORTHO05D004420 5.7e-42 175.6 194 53.6
BraA07t31831Z Brassica rapa HOM05D003597 ORTHO05D004420 9.7e-42 174.9 183 55.7
BolC6t40196H Brassica oleracea HOM05D003597 ORTHO05D004420 3.7e-41 172.9 186 53.8
C02p35180 Brassica napus HOM05D003597 ORTHO05D004420 4.8e-41 172.6 179 55.9
BcaC03g15776 Brassica carinata HOM05D003597 ORTHO05D004420 8.2e-41 171.8 179 55.9
A02p21890 Brassica napus HOM05D003597 ORTHO05D004420 8.2e-41 171.8 179 55.9
Lj4C579G4 Lonicera japonica HOM05D003597 ORTHO05D004420 1.1e-40 171.4 137 72.3
Lsat_1_v5_gn_6_109621 Lactuca sativa HOM05D003597 ORTHO05D004420 2.4e-40 170.2 225 49.8
BolC2t09533H Brassica oleracea HOM05D003597 ORTHO05D004420 1.6e-39 167.5 180 55.6
BraA02t07190Z Brassica rapa HOM05D003597 ORTHO05D004420 2.0e-39 167.2 180 55.6
Lalb_Chr11g0065691 Lupinus albus HOM05D003597 ORTHO05D004420 1.3e-38 164.5 143 59.4
CSS0017753 Camellia sinensis var. sinensis HOM05D003597 ORTHO05D004420 3.8e-38 162.9 164 58.5
ATR0121G011 Amborella trichopoda HOM05D003597 ORTHO05D004420 2.5e-37 160.2 179 52.5
CARHR071300 Cardamine hirsuta HOM05D003597 ORTHO05D004420 2.3e-35 153.7 137 61.3
SHI48839 Sapria himalayana HOM05D003597 ORTHO05D004420 1.5e-34 151.0 177 50.8
PGR042G3777 Punica granatum HOM05D003597 ORTHO05D004420 4.4e-34 149.4 195 48.2
MSTRG.1487 Avicennia marina HOM05D003597 ORTHO05D004420 2.2e-33 147.1 137 61.3
CSS0035700 Camellia sinensis var. sinensis HOM05D003597 ORTHO05D004420 4.5e-31 139.4 160 58.1
HPP92_004120 Vanilla planifolia HOM05D003597 ORTHO05D004420 4.5e-31 139.4 185 47.0
SGA_v2.0_scaffold24G10505 Striga asiatica HOM05D003597 ORTHO05D004420 5.9e-31 139.0 138 59.4
CDE06G0857 Ceratophyllum demersum HOM05D003597 ORTHO05D004420 6.5e-30 135.6 184 47.3
CDE06G1078 Ceratophyllum demersum HOM05D003597 ORTHO05D004420 1.9e-29 134.0 184 46.7
unitig_0.g2128 Utricularia gibba HOM05D003597 ORTHO05D004420 2.5e-29 133.7 163 52.8
Zm00001eb193530 Zea mays HOM05D003597 ORTHO05D004420 1.2e-28 131.3 172 47.1
Dinv27384 Davidia involucrata HOM05D003597 ORTHO05D004420 4.7e-28 129.4 139 59.0
Zm00001eb256170 Zea mays HOM05D003597 ORTHO05D004420 8.8e-27 125.2 173 47.4
Manes.02G158666 Manihot esculenta HOM05D003597 ORTHO05D004420 2.9e-22 110.2 78 67.9
HPP92_004068 Vanilla planifolia HOM05D003597 ORTHO05D004420 6.1e-20 102.4 183 38.8
Zm00001eb278990 Zea mays HOM05D003597 ORTHO05D004420 3.0e-14 83.6 170 37.6
SEGI_09945 Sequoiadendron giganteum HOM05D003597 ORTHO05D004420 3.9e-14 83.2 196 38.3
Aqoxy235s001 Aquilegia oxysepala HOM05D003597 ORTHO05D078876 9.5e-13 78.6 60 63.3
Lalb_Chr11g0065681 Lupinus albus HOM05D003597 ORTHO05D004420 1.3e-09 68.2 44 70.5
CAN.G22.26 Capsicum annuum HOM05D001423 ORTHO05D001412 3.5e-07 60.1 71 52.1


User provided reference genes

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