Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00369 Corylus avellana HOM05D005820 ORTHO05D007116 0.0e+00 1517.7 765 100.0
Cfa016076 Carpinus fangiana HOM05D005820 ORTHO05D007116 0.0e+00 1264.6 810 83.6
CiPaw.05G212600 Carya illinoinensis HOM05D005820 ORTHO05D007116 2.0e-309 1065.4 810 70.0
QL09p020654 Quercus lobata HOM05D005820 ORTHO05D007116 5.0e-297 1024.2 807 69.3
Atru.chr13.1435 Acer truncatum HOM05D005820 ORTHO05D007116 3.5e-242 842.0 811 57.5
Potri.013G077200 Populus trichocarpa HOM05D005820 ORTHO05D007116 2.3e-241 839.3 817 57.5
Atru.chr12.1871 Acer truncatum HOM05D005820 ORTHO05D007116 3.9e-241 838.6 811 57.3
TAR633G0012 Trochodendron aralioides HOM05D005820 ORTHO05D007116 8.1e-239 830.9 814 56.5
Duzib106G1003 Durio zibethinus HOM05D005820 ORTHO05D007116 8.7e-233 810.8 786 57.5
Nn3g21157 Nelumbo nucifera HOM05D005820 ORTHO05D007116 1.1e-230 803.9 815 54.8
TAR365G1123 Trochodendron aralioides HOM05D005820 ORTHO05D007116 7.4e-224 781.2 812 53.6
TAR365G1018 Trochodendron aralioides HOM05D005820 ORTHO05D007116 3.7e-223 778.9 813 54.1
TWI53G1480 Tripterygium wilfordii HOM05D005820 ORTHO05D007116 2.4e-222 776.2 812 53.7
RcHm_v2.0_Chr1g0384611 Rosa chinensis HOM05D005820 ORTHO05D007116 2.0e-221 773.1 807 54.4
Glyma.12G014600 Glycine max HOM05D005820 ORTHO05D007116 1.4e-219 766.9 812 52.6
Gorai.003G057900 Gossypium raimondii HOM05D005820 ORTHO05D007116 1.9e-219 766.5 807 54.9
Gohir.D03G055100 Gossypium hirsutum HOM05D005820 ORTHO05D007116 9.4e-219 764.2 807 54.6
FAN01G2368 Fragaria x ananassa HOM05D005820 ORTHO05D007116 3.6e-218 762.3 798 53.9
CSS0036845 Camellia sinensis var. sinensis HOM05D005820 ORTHO05D007116 1.0e-217 760.8 807 54.6
FvH4_7g34260 Fragaria vesca HOM05D005820 ORTHO05D007116 3.0e-217 759.2 798 53.8
Phvul.011G017500 Phaseolus vulgaris HOM05D005820 ORTHO05D007116 2.5e-216 756.1 812 52.2
MD07G1032700 Malus domestica HOM05D005820 ORTHO05D007116 1.3e-215 753.8 812 53.3
CANSAT54G2180 Cannabis sativa HOM05D005820 ORTHO05D007116 6.9e-214 748.0 794 53.5
FAN03G2216 Fragaria x ananassa HOM05D005820 ORTHO05D007116 1.5e-213 746.9 808 53.1
Thecc.05G222900 Theobroma cacao HOM05D005820 ORTHO05D007116 1.7e-212 743.4 779 55.5
VMungo1127G1342 Vigna mungo HOM05D005820 ORTHO05D007116 6.5e-212 741.5 818 51.1
Lj3g0016493 Lotus japonicus HOM05D005820 ORTHO05D007116 4.2e-211 738.8 804 51.0
Gohir.A02G125300 Gossypium hirsutum HOM05D005820 ORTHO05D007116 5.1e-209 731.9 736 55.8
CsaV3_5G005010 Cucumis sativus L. HOM05D005820 ORTHO05D007116 3.7e-207 725.7 809 51.2
MELO3C005455.2 Cucumis melo HOM05D005820 ORTHO05D007116 6.3e-207 724.9 809 51.1
Medtr5g082610 Medicago truncatula HOM05D005820 ORTHO05D007116 7.0e-206 721.5 807 50.1
Prupe.2G329300 Prunus persica HOM05D005820 ORTHO05D007116 4.7e-202 708.8 800 51.5
COL.COLO4_15131 Corchorus olitorius HOM05D005820 ORTHO05D007116 2.0e-200 703.4 813 51.2
Sed0005542 Sechium edule HOM05D005820 ORTHO05D007116 4.5e-197 692.2 810 49.0
FAN10G1332 Fragaria x ananassa HOM05D005820 ORTHO05D007116 1.1e-195 687.6 745 52.5
DCAR_020431 Daucus carota HOM05D005820 ORTHO05D007116 1.5e-195 687.2 809 49.8
TPR.G19809 Trifolium pratense HOM05D005820 ORTHO05D007116 7.2e-195 684.9 712 52.8
Rhsim03G0224500 Rhododendron simsii HOM05D005820 ORTHO05D007116 2.1e-194 683.3 743 52.1
Aqoxy2G01900 Aquilegia oxysepala HOM05D005820 ORTHO05D007116 2.7e-194 682.9 815 48.7
Sp6g27470 Schrenkiella parvula HOM05D005820 ORTHO05D007116 5.9e-189 665.2 809 47.1
Actinidia08766 Actinidia chinensis HOM05D005820 ORTHO05D007116 1.0e-188 664.5 737 51.0
Sopen12g007200 Solanum pennellii HOM05D005820 ORTHO05D007116 3.8e-188 662.5 807 48.7
Thhalv10012783m.g Eutrema salsugineum HOM05D005820 ORTHO05D007116 8.5e-188 661.4 808 46.9
Solyc12g013880.2 Solanum lycopersicum HOM05D005820 ORTHO05D007116 1.9e-187 660.2 807 48.6
vmacro06371 Vaccinium macrocarpon HOM05D005820 ORTHO05D007116 1.6e-186 657.1 839 48.0
AL6G27690 Arabidopsis lyrata HOM05D005820 ORTHO05D007116 8.8e-185 651.4 811 46.1
PSO210G4891 Papaver somniferum HOM05D005820 ORTHO05D007116 2.0e-184 650.2 843 46.9
Peaxi162Scf00046g02624 Petunia axillaris HOM05D005820 ORTHO05D007116 2.0e-184 650.2 801 48.2
THA.LOC104821161 Tarenaya hassleriana HOM05D005820 ORTHO05D007116 6.3e-183 645.2 814 45.9
BolC9t58877H Brassica oleracea HOM05D005820 ORTHO05D007116 2.3e-180 636.7 827 45.5
C09p60450 Brassica napus HOM05D005820 ORTHO05D007116 6.6e-180 635.2 805 45.1
Carub.0006s1489 Capsella rubella HOM05D005820 ORTHO05D007116 5.6e-179 632.1 803 45.8
BraA10t44315Z Brassica rapa HOM05D005820 ORTHO05D007116 2.1e-178 630.2 803 44.5
PGR042G2204 Punica granatum HOM05D005820 ORTHO05D007116 2.1e-178 630.2 794 46.1
PSO339G0775 Papaver somniferum HOM05D005820 ORTHO05D007116 2.8e-178 629.8 844 45.7
Eucgr.A02992 Eucalyptus grandis HOM05D005820 ORTHO05D007116 8.0e-178 628.2 796 46.6
PSO384G2364 Papaver somniferum HOM05D005820 ORTHO05D007116 2.3e-177 626.7 837 45.8
A10p22530 Brassica napus HOM05D005820 ORTHO05D007116 6.8e-177 625.2 800 44.2
ECA233G1554 Erigeron canadensis HOM05D005820 ORTHO05D007116 2.6e-176 623.2 789 47.4
ECA232G1869 Erigeron canadensis HOM05D005820 ORTHO05D007116 1.7e-175 620.5 796 46.4
HanXRQChr15g0492741 Helianthus annuus HOM05D005820 ORTHO05D007116 6.4e-175 618.6 784 46.8
MSTRG.19155 Avicennia marina HOM05D005820 ORTHO05D007116 3.2e-174 616.3 810 46.0
Cc10_g10830 Coffea canephora HOM05D005820 ORTHO05D007116 1.0e-172 611.3 801 45.7
Aa31LG11G12940 Aethionema arabicum HOM05D005820 ORTHO05D007116 1.7e-172 610.5 869 42.8
Manes.08G160700 Manihot esculenta HOM05D005820 ORTHO05D007116 2.6e-168 596.7 680 51.0
AT5G16690 Arabidopsis thaliana HOM05D005820 ORTHO05D007116 4.4e-168 595.9 769 44.6
AUR62033087 Chenopodium quinoa HOM05D005820 ORTHO05D007116 3.7e-167 592.8 779 45.3
SGA_v2.0_scaffold75G24867 Striga asiatica HOM05D005820 ORTHO05D007116 6.0e-165 585.5 791 44.9
Lsat_1_v5_gn_9_46201 Lactuca sativa HOM05D005820 ORTHO05D007116 1.4e-161 574.3 787 44.3
BcaB08g36827 Brassica carinata HOM05D005820 ORTHO05D007116 2.0e-160 570.5 783 43.3
CARHR196510 Cardamine hirsuta HOM05D005820 ORTHO05D007116 1.3e-159 567.8 806 42.7
Migut.J00550 Erythranthe guttata HOM05D005820 ORTHO05D007116 1.1e-158 564.7 803 43.0
Nitab4.5_0012358g0010 Nicotiana tabacum HOM05D005820 ORTHO05D007116 4.7e-154 549.3 802 42.1
Lalb_Chr01g0000781 Lupinus albus HOM05D005820 ORTHO05D007116 1.4e-153 547.7 590 51.2
ATR0829G080 Amborella trichopoda HOM05D005820 ORTHO05D007116 5.2e-153 545.8 768 43.8
EL10Ac2g03131 Beta vulgaris HOM05D005820 ORTHO05D007116 5.8e-152 542.3 779 43.3
EL10Ac4g08387 Beta vulgaris HOM05D005820 ORTHO05D007116 8.4e-151 538.5 779 43.0
Os10g0402200 Oryza sativa ssp. japonica HOM05D005820 ORTHO05D007116 6.2e-146 522.3 805 39.9
CDE02G0417 Ceratophyllum demersum HOM05D005820 ORTHO05D007116 4.0e-145 519.6 707 42.4
HPP92_000954 Vanilla planifolia HOM05D005820 ORTHO05D007116 2.2e-143 513.8 818 40.0
Zm00001eb031810 Zea mays HOM05D005820 ORTHO05D007116 6.0e-141 505.8 796 38.2
Ciclev10033588m.g Citrus clementina HOM05D005820 ORTHO05D007116 1.0e-140 505.0 370 68.9
Psat5g135040 Pisum sativum HOM05D005820 ORTHO05D007116 2.9e-135 486.9 536 50.2
Sabra13G0066100 Salix brachista HOM05D005820 ORTHO05D007116 3.3e-131 473.4 325 71.7
ClCG01G004810 Citrullus lanatus HOM05D005820 ORTHO05D007116 3.1e-129 466.8 490 53.1
Sc13g0011020 Simmondsia chinensis HOM05D005820 ORTHO05D007116 6.0e-125 452.6 559 47.4
CAN.G103.20 Capsicum annuum HOM05D005820 ORTHO05D007116 3.0e-124 450.3 599 46.6
Hma1.2p1_0419F.1_g149510 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 6.7e-124 449.1 446 55.8
Nitab4.5_0010710g0030 Nicotiana tabacum HOM05D005820 ORTHO05D007116 1.3e-116 424.9 594 44.3
PSO170G6050 Papaver somniferum HOM05D005820 ORTHO05D007116 5.3e-113 412.9 438 52.3
unitig_749.g14271 Utricularia gibba HOM05D005820 ORTHO05D007116 3.4e-112 410.2 769 36.7
COL.COLO4_22345 Corchorus olitorius HOM05D005820 ORTHO05D007116 1.0e-111 408.7 358 60.9
Ca_03104_v3 Cicer arietinum L. HOM05D005820 ORTHO05D007116 1.7e-111 407.9 403 53.6
arahy.Tifrunner.gnm1.ann1.9S7XN2 Arachis hypogaea HOM05D005820 ORTHO05D007116 1.4e-110 404.8 334 60.8
AUR62042764 Chenopodium quinoa HOM05D005820 ORTHO05D007116 1.0e-100 372.1 658 38.6
SalBow3G3950 Salvia bowleyana HOM05D005820 ORTHO05D007116 2.0e-99 367.9 557 41.7
arahy.Tifrunner.gnm1.ann1.86ZX86 Arachis hypogaea HOM05D005820 ORTHO05D007116 5.3e-97 359.8 433 48.7
Hma1.2p1_0419F.1_g149500 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 1.2e-96 358.6 278 66.2
PGSC0003DMG402015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 2.1e-93 347.8 336 56.5
PGSC0003DMG401015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 8.0e-85 319.3 389 47.3
SHI15005 Sapria himalayana HOM05D005820 ORTHO05D007116 6.3e-82 309.7 344 49.1
Cpa.g.sc43.140 Carica papaya HOM05D005820 ORTHO05D007116 9.1e-81 305.8 252 63.1
MD01G1239300 Malus domestica HOM05D005820 ORTHO05D007116 1.6e-80 305.1 507 39.6
Lj3A884T58 Lonicera japonica HOM05D005820 ORTHO05D007116 1.1e-78 298.9 253 63.6
AagrBONN_evm.TU.Sc2ySwM_368.2608 Anthoceros agrestis HOM05D005820 ORTHO05D007116 4.1e-73 280.4 718 30.1
Mapoly0140s0032 Marchantia polymorpha HOM05D005820 ORTHO05D007116 4.1e-73 280.4 836 28.2
Ciclev10032799m.g Citrus clementina HOM05D005820 ORTHO05D007116 2.9e-71 274.2 247 58.7
SMO203G0218 Selaginella moellendorffii HOM05D005820 ORTHO05D007116 5.2e-68 263.5 720 27.1
Pp3c16_7630 Physcomitrium patens HOM05D005820 ORTHO05D007116 1.7e-66 258.5 865 28.0
arahy.Tifrunner.gnm1.ann1.9KL91U Arachis hypogaea HOM05D005820 ORTHO05D007116 2.5e-62 244.6 743 30.8
arahy.Tifrunner.gnm1.ann1.CH4JFK Arachis hypogaea HOM05D005820 ORTHO05D007116 1.2e-61 242.3 741 30.9
Lalb_Chr01g0000771 Lupinus albus HOM05D005820 ORTHO05D007116 1.8e-60 238.4 164 71.3
Oeu046340.1 Olea europaea HOM05D005820 ORTHO05D007116 9.2e-57 226.1 160 67.5
CAN.G824.56 Capsicum annuum HOM05D005820 ORTHO05D007116 1.1e-54 219.2 160 68.1
Nitab4.5_0010710g0040 Nicotiana tabacum HOM05D005820 ORTHO05D007116 3.5e-48 197.6 140 71.4
CBR_g52284 Chara braunii HOM05D005820 ORTHO05D007116 1.1e-46 192.6 895 23.1
Cpa.g.sc43.143 Carica papaya HOM05D005820 ORTHO05D007116 1.1e-44 186.0 264 43.2
Lj3A884T57 Lonicera japonica HOM05D005820 ORTHO05D007116 3.5e-40 171.0 295 39.0
Oeu001352.2 Olea europaea HOM05D005820 ORTHO05D007116 3.0e-39 167.9 289 38.8
AUR62022348 Chenopodium quinoa HOM05D005820 ORTHO05D007116 1.6e-29 135.6 98 71.4
Hma1.2p1_0419F.1_g149520 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 1.5e-27 129.0 170 40.6
CAN.G557.3 Capsicum annuum HOM05D005820 ORTHO05D007116 3.8e-26 124.4 237 38.0
CAN.G1793.2 Capsicum annuum HOM05D005820 ORTHO05D007116 5.3e-20 104.0 128 45.3
SEGI_39455 Sequoiadendron giganteum HOM05D005820 ORTHO05D007116 6.0e-16 90.5 128 40.6
SHI15006 Sapria himalayana HOM05D005820 ORTHO05D007116 7.9e-16 90.1 179 36.3
Ah.10g032150 Amaranthus hybridus HOM05D005820 ORTHO05D007116 4.2e-09 67.8 359 25.3
arahy.Tifrunner.gnm1.ann1.DVH85A Arachis hypogaea HOM05D005820 ORTHO05D007116 6.0e-08 63.9 59 61.0
Actinidia27038 Actinidia chinensis HOM05D002899 ORTHO05D003850 1.8e-07 62.4 98 39.8
CAN.G159.6 Capsicum annuum HOM05D001691 ORTHO05D007116 6.7e-07 60.5 122 35.2
COL.COLO4_37046 Corchorus olitorius HOM05D005820 ORTHO05D007116 1.5e-06 59.3 35 74.3
Rhsim03G0224400 Rhododendron simsii HOM05D005820 ORTHO05D007116 1.5e-06 59.3 109 42.2
MCO08G313 Micromonas commoda HOM05D005820 ORTHO05D007116 7.4e-06 57.0 115 34.8


User provided reference genes

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