Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00239 Corylus avellana HOM05D005832 ORTHO05D007117 5.5e-93 344.7 237 100.0
Haze_00242 Corylus avellana HOM05D005832 ORTHO05D007117 2.7e-92 342.4 237 99.6
Cfa016207 Carpinus fangiana HOM05D005832 ORTHO05D007117 6.3e-89 331.3 237 96.6
CiPaw.06G044600 Carya illinoinensis HOM05D005832 ORTHO05D007117 8.0e-76 287.7 238 86.6
QL09p007826 Quercus lobata HOM05D005832 ORTHO05D007117 3.7e-73 278.9 236 84.7
Dinv29254 Davidia involucrata HOM05D005832 ORTHO05D007117 9.1e-72 274.2 238 84.0
Prupe.2G314300 Prunus persica HOM05D005832 ORTHO05D007117 7.2e-69 264.6 234 82.9
GSVIVG01038586001 Vitis vinifera HOM05D005832 ORTHO05D007117 2.3e-67 259.6 238 83.6
Potri.012G018100 Populus trichocarpa HOM05D005832 ORTHO05D007117 4.0e-67 258.8 238 81.9
TAR375G0053 Trochodendron aralioides HOM05D005832 ORTHO05D007117 9.7e-66 254.2 254 76.4
PGR142G2159 Punica granatum HOM05D005832 ORTHO05D007117 3.7e-65 252.3 240 81.2
RcHm_v2.0_Chr1g0381721 Rosa chinensis HOM05D005832 ORTHO05D007117 3.7e-65 252.3 237 81.0
Atru.chr12.2262 Acer truncatum HOM05D005832 ORTHO05D007117 4.8e-65 251.9 240 80.0
Oeu010700.1 Olea europaea HOM05D005832 ORTHO05D007117 4.8e-65 251.9 242 81.4
Eucgr.K00402 Eucalyptus grandis HOM05D005832 ORTHO05D007117 8.3e-65 251.1 249 68.3
FvH4_7g32120 Fragaria vesca HOM05D005832 ORTHO05D007117 1.4e-64 250.4 238 81.9
FAN06G2446 Fragaria x ananassa HOM05D005832 ORTHO05D007117 1.4e-64 250.4 238 81.9
Ciclev10021983m.g Citrus clementina HOM05D005832 ORTHO05D007117 1.8e-64 250.0 239 79.9
FAN10G0265 Fragaria x ananassa HOM05D005832 ORTHO05D007117 1.2e-63 247.3 238 81.9
Hma1.2p1_0591F.1_g185170 Hydrangea macrophylla HOM05D005832 ORTHO05D007117 3.5e-63 245.7 238 78.6
Actinidia06134 Actinidia chinensis HOM05D005832 ORTHO05D007117 7.7e-63 244.6 238 79.4
Sabra12G0014400 Salix brachista HOM05D005832 ORTHO05D007117 1.0e-62 244.2 238 79.8
MBI18_g01156_MAGBIO Magnolia biondii HOM05D005832 ORTHO05D007117 1.3e-62 243.8 238 79.0
MD07G1294700 Malus domestica HOM05D005832 ORTHO05D007117 1.3e-62 243.8 235 82.1
AUR62035562 Chenopodium quinoa HOM05D005832 ORTHO05D007117 3.8e-62 242.3 233 79.0
CAN.G481.39 Capsicum annuum HOM05D005832 ORTHO05D007117 2.5e-61 239.6 239 77.4
Duzib084G1042 Durio zibethinus HOM05D005832 ORTHO05D007117 2.5e-61 239.6 237 78.9
Peaxi162Scf00740g00233 Petunia axillaris HOM05D005832 ORTHO05D007117 2.5e-61 239.6 239 77.4
Thecc.03G202400 Theobroma cacao HOM05D005832 ORTHO05D007117 3.2e-61 239.2 239 78.2
FAN10G0314 Fragaria x ananassa HOM05D005832 ORTHO05D007117 4.2e-61 238.8 241 80.5
Oeu055193.1 Olea europaea HOM05D005832 ORTHO05D007117 4.2e-61 238.8 263 62.7
MD01G1223900 Malus domestica HOM05D005832 ORTHO05D007117 5.5e-61 238.4 231 81.4
Psat5g075600 Pisum sativum HOM05D005832 ORTHO05D007117 5.5e-61 238.4 244 77.0
ClCG05G009090 Citrullus lanatus HOM05D005832 ORTHO05D007117 7.2e-61 238.0 238 78.2
PGSC0003DMG400018522 Solanum tuberosum HOM05D005832 ORTHO05D007117 1.2e-60 237.3 238 78.6
Manes.01G039700 Manihot esculenta HOM05D005832 ORTHO05D007117 2.7e-60 236.1 239 78.7
MSTRG.8527 Avicennia marina HOM05D005832 ORTHO05D007117 3.6e-60 235.7 240 77.1
CDE09G0779 Ceratophyllum demersum HOM05D005832 ORTHO05D007117 3.6e-60 235.7 237 77.2
MELO3C019377.2 Cucumis melo HOM05D005832 ORTHO05D007117 6.1e-60 235.0 238 78.2
TWI39G1154 Tripterygium wilfordii HOM05D005832 ORTHO05D007117 1.4e-59 233.8 238 77.3
Medtr3g491890 Medicago truncatula HOM05D005832 ORTHO05D007117 2.3e-59 233.0 243 76.1
CsaV3_3G019700 Cucumis sativus L. HOM05D005832 ORTHO05D007117 4.0e-59 232.3 238 77.3
Nn3g18931 Nelumbo nucifera HOM05D005832 ORTHO05D007117 4.0e-59 232.3 238 77.3
Lj1g0002080 Lotus japonicus HOM05D005832 ORTHO05D007117 6.8e-59 231.5 238 76.9
Nitab4.5_0007100g0060 Nicotiana tabacum HOM05D005832 ORTHO05D007117 1.2e-58 230.7 239 75.7
EL10Ac3g05248 Beta vulgaris HOM05D005832 ORTHO05D007117 2.0e-58 229.9 237 65.4
Gohir.A09G185500 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.0e-58 229.9 238 76.9
SalBow2G0471 Salvia bowleyana HOM05D005832 ORTHO05D007117 2.6e-58 229.6 237 77.6
Cc02_g01260 Coffea canephora HOM05D005832 ORTHO05D007117 3.4e-58 229.2 245 76.3
Solyc03g082890.3 Solanum lycopersicum HOM05D005832 ORTHO05D007117 5.7e-58 228.4 238 76.1
Sopen03g022710 Solanum pennellii HOM05D005832 ORTHO05D007117 7.5e-58 228.0 238 76.1
Glyma.06G131300 Glycine max HOM05D005832 ORTHO05D007117 8.3e-57 224.6 243 77.4
Phvul.009G050400 Phaseolus vulgaris HOM05D005832 ORTHO05D007117 1.1e-56 224.2 242 74.4
Ca_16726_v3 Cicer arietinum L. HOM05D005832 ORTHO05D007117 3.1e-56 222.6 244 74.6
Glyma.04G233500 Glycine max HOM05D005832 ORTHO05D007117 1.2e-55 220.7 244 75.0
VMungo1309G1177 Vigna mungo HOM05D005832 ORTHO05D007117 1.6e-55 220.3 242 74.4
arahy.Tifrunner.gnm1.ann1.082NQD Arachis hypogaea HOM05D005832 ORTHO05D007117 2.7e-55 219.5 237 76.4
AUR62006065 Chenopodium quinoa HOM05D005832 ORTHO05D007117 5.9e-55 218.4 196 85.7
arahy.Tifrunner.gnm1.ann1.26JPZN Arachis hypogaea HOM05D005832 ORTHO05D007117 7.7e-55 218.0 237 75.9
SGA_v2.0_scaffold125G33711 Striga asiatica HOM05D005832 ORTHO05D007117 1.3e-54 217.2 237 73.8
Gorai.006G202400 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.7e-54 216.9 240 74.2
HanXRQChr08g0225151 Helianthus annuus HOM05D005832 ORTHO05D007117 1.7e-54 216.9 244 74.2
Aa31LG3G9660 Aethionema arabicum HOM05D005832 ORTHO05D007117 2.9e-54 216.1 241 74.3
Gorai.013G219100 Gossypium raimondii HOM05D005832 ORTHO05D007117 2.9e-54 216.1 258 51.6
COL.COLO4_16805 Corchorus olitorius HOM05D005832 ORTHO05D007117 5.0e-54 215.3 185 89.2
PSO063G3297 Papaver somniferum HOM05D005832 ORTHO05D007117 5.0e-54 215.3 240 74.6
Sed0026931 Sechium edule HOM05D005832 ORTHO05D007117 1.1e-53 214.2 241 73.4
Sc25g0000950 Simmondsia chinensis HOM05D005832 ORTHO05D007117 1.1e-53 214.2 237 73.4
Lalb_Chr08g0240071 Lupinus albus HOM05D005832 ORTHO05D007117 1.9e-53 213.4 239 72.8
TPR.G33655 Trifolium pratense HOM05D005832 ORTHO05D007117 2.5e-53 213.0 197 83.2
vmacro10134 Vaccinium macrocarpon HOM05D005832 ORTHO05D007117 3.3e-53 212.6 239 73.2
CARHR266630 Cardamine hirsuta HOM05D005832 ORTHO05D007117 5.5e-53 211.8 241 72.2
Migut.F01014 Erythranthe guttata HOM05D005832 ORTHO05D007117 5.5e-53 211.8 157 71.3
Gohir.D12G019400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 5.5e-53 211.8 193 86.0
PSO170G4678 Papaver somniferum HOM05D005832 ORTHO05D007117 9.5e-53 211.1 206 81.6
Thhalv10014535m.g Eutrema salsugineum HOM05D005832 ORTHO05D007117 1.2e-52 210.7 241 73.0
Lj3A899T66 Lonicera japonica HOM05D005832 ORTHO05D007117 1.2e-52 210.7 157 72.6
ATR0680G157 Amborella trichopoda HOM05D005832 ORTHO05D007117 2.8e-52 209.5 183 84.7
CANSAT21G0464 Cannabis sativa HOM05D005832 ORTHO05D007117 2.8e-52 209.5 240 72.1
Gorai.007G219400 Gossypium raimondii HOM05D005832 ORTHO05D007117 2.8e-52 209.5 237 74.3
Gorai.008G174000 Gossypium raimondii HOM05D005832 ORTHO05D007117 3.6e-52 209.1 237 75.1
Gorai.008G019700 Gossypium raimondii HOM05D005832 ORTHO05D007117 4.7e-52 208.8 193 85.5
Sp6g15630 Schrenkiella parvula HOM05D005832 ORTHO05D007117 4.7e-52 208.8 242 71.9
unitig_578.g16672 Utricularia gibba HOM05D005832 ORTHO05D007117 1.4e-51 207.2 238 72.7
C09p43330 Brassica napus HOM05D005832 ORTHO05D007117 2.0e-50 203.4 244 72.5
BcaC04g20449 Brassica carinata HOM05D005832 ORTHO05D007117 2.6e-50 203.0 244 72.5
BolC9t57215H Brassica oleracea HOM05D005832 ORTHO05D007117 2.6e-50 203.0 244 72.5
BcaB08g35713 Brassica carinata HOM05D005832 ORTHO05D007117 3.4e-50 202.6 241 71.0
Lsat_1_v5_gn_9_63281 Lactuca sativa HOM05D005832 ORTHO05D007117 3.4e-50 202.6 213 77.9
A10p10930 Brassica napus HOM05D005832 ORTHO05D007117 4.4e-50 202.2 244 71.7
Os10g0502000 Oryza sativa ssp. japonica HOM05D005832 ORTHO05D007117 7.5e-50 201.4 206 78.2
Zm00001eb220820 Zea mays HOM05D005832 ORTHO05D007117 7.5e-50 201.4 208 78.8
Carub.0008s1366 Capsella rubella HOM05D005832 ORTHO05D007117 9.8e-50 201.1 240 71.7
DCAR_020339 Daucus carota HOM05D005832 ORTHO05D007117 1.3e-49 200.7 198 81.8
AT5G53490 Arabidopsis thaliana HOM05D005832 ORTHO05D007117 1.7e-49 200.3 241 71.4
Gorai.004G199200 Gossypium raimondii HOM05D005832 ORTHO05D007117 2.2e-49 199.9 202 64.9
Rhsim09G0206900 Rhododendron simsii HOM05D005832 ORTHO05D007117 1.4e-48 197.2 198 79.8
CSS0000669 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 2.4e-48 196.4 208 55.3
CSS0046458 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 2.4e-48 196.4 208 55.3
ECA233G1427 Erigeron canadensis HOM05D005832 ORTHO05D007117 3.2e-48 196.1 224 73.2
Gohir.D07G112932 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.2e-48 196.1 260 47.7
HPP92_013004 Vanilla planifolia HOM05D005832 ORTHO05D007117 5.4e-48 195.3 197 78.7
Gohir.D09G180400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 5.9e-47 191.8 237 70.9
BraA10t43184Z Brassica rapa HOM05D005832 ORTHO05D007117 7.8e-47 191.4 184 84.8
SEGI_24850 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 7.8e-47 191.4 182 84.1
Ah.13g070460 Amaranthus hybridus HOM05D005832 ORTHO05D007117 4.3e-45 185.7 123 74.8
THA.LOC104799961 Tarenaya hassleriana HOM05D005832 ORTHO05D007117 1.2e-44 184.1 241 68.5
FAN01G1435 Fragaria x ananassa HOM05D005832 ORTHO05D007117 5.2e-43 178.7 157 93.6
Gohir.A05G409400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 5.2e-43 178.7 122 73.8
Gohir.D01G203700 Gossypium hirsutum HOM05D005832 ORTHO05D007117 5.2e-43 178.7 122 73.8
Gohir.A10G001400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 6.8e-43 178.3 130 70.0
FAN03G0720 Fragaria x ananassa HOM05D005832 ORTHO05D007117 8.9e-43 177.9 158 91.8
AL8G28210 Arabidopsis lyrata HOM05D005832 ORTHO05D007117 2.0e-42 176.8 166 88.6
Gohir.D02G154600 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.4e-42 176.0 121 72.7
Gohir.A11G163501 Gossypium hirsutum HOM05D005832 ORTHO05D007117 9.8e-42 174.5 238 50.8
Gohir.A13G227280 Gossypium hirsutum HOM05D005832 ORTHO05D007117 9.8e-42 174.5 122 72.1
Gohir.D11G247000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.9e-41 172.9 124 71.0
Aqoxy6G02259 Aquilegia oxysepala HOM05D005832 ORTHO05D007117 4.9e-41 172.2 219 69.4
Gohir.D03G118200 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.2e-40 169.5 123 72.4
Gohir.D12G161000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.2e-39 167.5 238 50.4
Pp3c23_22190 Physcomitrium patens HOM05D005832 ORTHO05D007117 7.8e-39 164.9 204 68.1
Duzib205G0233 Durio zibethinus HOM05D005832 ORTHO05D007117 3.0e-38 162.9 240 65.8
AagrBONN_evm.TU.Sc2ySwM_228.2510 Anthoceros agrestis HOM05D005832 ORTHO05D007117 2.4e-32 143.3 151 54.3
Mapoly0014s0126 Marchantia polymorpha HOM05D005832 ORTHO05D007117 5.4e-32 142.1 206 59.7
CBR_g40818 Chara braunii HOM05D005832 ORTHO05D007117 7.1e-32 141.7 122 60.7
Gorai.004G257600 Gossypium raimondii HOM05D005832 ORTHO05D007117 7.1e-32 141.7 75 89.3
SMO111G0094 Selaginella moellendorffii HOM05D005832 ORTHO05D007117 3.9e-30 136.0 156 77.6
SEGI_05976 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 2.4e-19 100.1 62 72.6
Cpa.g.sc3.109 Carica papaya HOM05D005832 ORTHO05D007117 7.3e-13 78.6 81 55.6
Actinidia18663 Actinidia chinensis HOM05D005832 ORTHO05D007117 2.1e-12 77.0 116 79.3
Cre09.g404000 Chlamydomonas reinhardtii HOM05D005832 ORTHO05D007117 1.2e-10 71.2 207 37.2
FAN01G3091 Fragaria x ananassa HOM05D005832 ORTHO05D007117 5.8e-10 68.9 97 48.5


User provided reference genes

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