Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00101 Corylus avellana HOM05D004719 ORTHO05D005519 7.2e-117 424.1 239 100.0
Cfa016352 Carpinus fangiana HOM05D004719 ORTHO05D005519 1.5e-106 389.8 239 90.8
Duzib084G0320 Durio zibethinus HOM05D004719 ORTHO05D005519 1.0e-78 297.4 241 66.0
vmacro10099 Vaccinium macrocarpon HOM05D004719 ORTHO05D005519 2.5e-77 292.7 240 67.5
Thecc.03G191400 Theobroma cacao HOM05D004719 ORTHO05D005519 4.0e-75 285.4 242 64.5
Rhsim09G0203300 Rhododendron simsii HOM05D004719 ORTHO05D005519 6.8e-75 284.6 244 65.2
TWI23G0029 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 1.5e-74 283.5 236 65.3
TWI14G0874 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 3.4e-74 282.3 236 64.4
Dinv35299 Davidia involucrata HOM05D004719 ORTHO05D005519 4.4e-74 282.0 240 64.6
CSS0006896 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 4.9e-73 278.5 240 66.7
CSS0042605 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 4.9e-73 278.5 240 66.7
Gorai.007G014400 Gossypium raimondii HOM05D004719 ORTHO05D005519 2.4e-72 276.2 239 63.6
Gohir.D11G014000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 5.4e-72 275.0 239 63.2
Gohir.A11G013800 Gossypium hirsutum HOM05D004719 ORTHO05D005519 1.2e-71 273.9 239 62.8
TAR333G0005 Trochodendron aralioides HOM05D004719 ORTHO05D005519 1.2e-71 273.9 240 64.6
Duzib068G0142 Durio zibethinus HOM05D004719 ORTHO05D005519 2.0e-71 273.1 241 64.3
Nn7g37372 Nelumbo nucifera HOM05D004719 ORTHO05D005519 2.0e-71 273.1 239 64.0
CiPaw.06G006600 Carya illinoinensis HOM05D004719 ORTHO05D005519 7.8e-71 271.2 223 72.6
QL09p011210 Quercus lobata HOM05D004719 ORTHO05D005519 1.0e-70 270.8 247 67.6
TWI39G0409 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 1.0e-70 270.8 236 63.6
Nn1g01780 Nelumbo nucifera HOM05D004719 ORTHO05D005519 2.3e-70 269.6 239 64.0
Prupe.2G306000 Prunus persica HOM05D004719 ORTHO05D005519 3.9e-70 268.9 243 63.4
Duzib205G0172 Durio zibethinus HOM05D004719 ORTHO05D005519 1.5e-69 266.9 238 60.5
MD07G1283600 Malus domestica HOM05D004719 ORTHO05D005519 1.5e-69 266.9 245 62.0
Potri.012G033300 Populus trichocarpa HOM05D004719 ORTHO05D005519 7.3e-69 264.6 237 60.3
Actinidia31859 Actinidia chinensis HOM05D004719 ORTHO05D005519 2.8e-68 262.7 241 66.4
Manes.06G156000 Manihot esculenta HOM05D004719 ORTHO05D005519 8.0e-68 261.2 221 64.3
MD01G1213900 Malus domestica HOM05D004719 ORTHO05D005519 2.3e-67 259.6 246 64.6
Cpa.g.sc3.37 Carica papaya HOM05D004719 ORTHO05D005519 1.2e-66 257.3 240 63.3
Atru.chr1.287 Acer truncatum HOM05D004719 ORTHO05D005519 1.5e-66 256.9 241 64.7
MELO3C005862.2 Cucumis melo HOM05D004719 ORTHO05D005519 2.0e-66 256.5 239 66.5
Cc02_g02010 Coffea canephora HOM05D004719 ORTHO05D005519 4.4e-66 255.4 241 67.6
SGA_v2.0_scaffold192G40593 Striga asiatica HOM05D004719 ORTHO05D005519 1.3e-65 253.8 245 58.4
Ciclev10005830m.g Citrus clementina HOM05D004719 ORTHO05D005519 2.9e-65 252.7 240 62.5
SalBow4G0130 Salvia bowleyana HOM05D004719 ORTHO05D005519 1.1e-64 250.8 244 57.0
Hma1.2p1_1891F.1_g306690 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 2.4e-64 249.6 235 59.6
Hma1.2p1_0327F.1_g126670 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 3.2e-64 249.2 240 59.6
ClCG01G000680 Citrullus lanatus HOM05D004719 ORTHO05D005519 5.4e-64 248.4 265 58.9
CsaV3_5G000780 Cucumis sativus L. HOM05D004719 ORTHO05D005519 9.2e-64 247.7 239 63.2
SalBow4G0254 Salvia bowleyana HOM05D004719 ORTHO05D005519 9.2e-64 247.7 244 56.6
PSO170G2586 Papaver somniferum HOM05D004719 ORTHO05D005519 1.6e-63 246.9 245 60.0
Aqoxy5G04028 Aquilegia oxysepala HOM05D004719 ORTHO05D005519 4.6e-63 245.4 239 66.1
PSO063G4149 Papaver somniferum HOM05D004719 ORTHO05D005519 4.6e-63 245.4 245 59.6
TAR374G0131 Trochodendron aralioides HOM05D004719 ORTHO05D005519 1.7e-62 243.4 206 67.5
MSTRG.8686 Avicennia marina HOM05D004719 ORTHO05D005519 8.6e-62 241.1 242 54.1
Hma1.2p1_0142F.1_g064100 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 1.1e-61 240.7 257 55.3
AUR62021055 Chenopodium quinoa HOM05D004719 ORTHO05D005519 1.5e-61 240.4 243 63.8
Lj1g0014949 Lotus japonicus HOM05D004719 ORTHO05D005519 1.9e-61 240.0 240 58.3
EL10Ac3g05361 Beta vulgaris HOM05D004719 ORTHO05D005519 2.5e-61 239.6 227 61.7
Sed0024250 Sechium edule HOM05D004719 ORTHO05D005519 2.1e-60 236.5 239 60.3
arahy.Tifrunner.gnm1.ann1.A0EQPQ Arachis hypogaea HOM05D004719 ORTHO05D005519 3.6e-60 235.7 223 63.2
AUR62031477 Chenopodium quinoa HOM05D004719 ORTHO05D005519 3.6e-60 235.7 243 64.2
Oeu049096.1 Olea europaea HOM05D004719 ORTHO05D005519 3.6e-60 235.7 238 55.5
Oeu009271.1 Olea europaea HOM05D004719 ORTHO05D005519 4.7e-60 235.3 248 54.4
DCAR_020296 Daucus carota HOM05D004719 ORTHO05D005519 6.2e-60 235.0 229 55.9
Lsat_1_v5_gn_2_134381 Lactuca sativa HOM05D004719 ORTHO05D005519 8.1e-60 234.6 233 56.2
CANSAT21G2536 Cannabis sativa HOM05D004719 ORTHO05D005519 1.8e-59 233.4 247 59.5
Potri.015G023600 Populus trichocarpa HOM05D004719 ORTHO05D005519 6.8e-59 231.5 237 55.7
arahy.Tifrunner.gnm1.ann1.YXX8CM Arachis hypogaea HOM05D004719 ORTHO05D005519 1.2e-58 230.7 223 67.7
COL.COLO4_08254 Corchorus olitorius HOM05D004719 ORTHO05D005519 1.2e-58 230.7 157 75.2
Sed0016292 Sechium edule HOM05D004719 ORTHO05D005519 3.4e-58 229.2 245 53.1
Ah.07g206120 Amaranthus hybridus HOM05D004719 ORTHO05D005519 4.4e-58 228.8 245 54.3
Migut.F00251 Erythranthe guttata HOM05D004719 ORTHO05D005519 3.7e-57 225.7 241 51.9
Sp6g15480 Schrenkiella parvula HOM05D004719 ORTHO05D005519 3.7e-57 225.7 240 53.3
Aa31LG3G9210 Aethionema arabicum HOM05D004719 ORTHO05D005519 4.9e-57 225.3 239 52.3
Eucgr.A02672 Eucalyptus grandis HOM05D004719 ORTHO05D005519 1.1e-56 224.2 157 72.0
Gohir.D09G178000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 1.1e-56 224.2 221 58.8
Gohir.A09G183300 Gossypium hirsutum HOM05D004719 ORTHO05D005519 1.9e-56 223.4 220 58.2
FAN03G2418 Fragaria x ananassa HOM05D004719 ORTHO05D005519 4.1e-56 222.2 245 52.7
FAN06G4721 Fragaria x ananassa HOM05D004719 ORTHO05D005519 4.1e-56 222.2 242 52.5
FAN10G3127 Fragaria x ananassa HOM05D004719 ORTHO05D005519 4.1e-56 222.2 245 52.2
Thhalv10014603m.g Eutrema salsugineum HOM05D004719 ORTHO05D005519 1.2e-55 220.7 239 51.5
Gorai.006G200100 Gossypium raimondii HOM05D004719 ORTHO05D005519 1.2e-55 220.7 221 58.4
FvH4_7g30890 Fragaria vesca HOM05D004719 ORTHO05D005519 1.6e-55 220.3 243 53.1
Sc13g0009490 Simmondsia chinensis HOM05D004719 ORTHO05D005519 1.6e-55 220.3 157 72.0
Nitab4.5_0001331g0150 Nicotiana tabacum HOM05D004719 ORTHO05D005519 2.1e-55 219.9 249 50.2
FAN01G1522 Fragaria x ananassa HOM05D004719 ORTHO05D005519 2.7e-55 219.5 249 51.4
Lalb_Chr23g0271411 Lupinus albus HOM05D004719 ORTHO05D005519 2.7e-55 219.5 241 56.8
MSTRG.27052 Avicennia marina HOM05D004719 ORTHO05D005519 4.6e-55 218.8 245 51.0
Nitab4.5_0000472g0190 Nicotiana tabacum HOM05D004719 ORTHO05D005519 4.6e-55 218.8 249 50.2
Phvul.008G159900 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 4.6e-55 218.8 239 54.8
PGR142G1718 Punica granatum HOM05D004719 ORTHO05D005519 6.0e-55 218.4 240 54.2
RcHm_v2.0_Chr1g0379961 Rosa chinensis HOM05D004719 ORTHO05D005519 6.0e-55 218.4 247 51.4
PGSC0003DMG400009067 Solanum tuberosum HOM05D004719 ORTHO05D005519 6.0e-55 218.4 244 52.0
Glyma.04G239200 Glycine max HOM05D004719 ORTHO05D005519 1.3e-54 217.2 239 53.6
PGR042G1451 Punica granatum HOM05D004719 ORTHO05D005519 3.0e-54 216.1 236 51.7
Carub.0008s1351 Capsella rubella HOM05D004719 ORTHO05D005519 6.6e-54 214.9 240 55.4
HanXRQChr14g0462731 Helianthus annuus HOM05D004719 ORTHO05D005519 8.6e-54 214.5 241 56.8
A03p15190 Brassica napus HOM05D004719 ORTHO05D005519 1.1e-53 214.2 249 50.6
Medtr3g090640 Medicago truncatula HOM05D004719 ORTHO05D005519 4.3e-53 212.2 240 60.8
Ca_16667_v3 Cicer arietinum L. HOM05D004719 ORTHO05D005519 5.6e-53 211.8 156 67.9
THA.LOC104800282 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 7.3e-53 211.5 253 51.0
unitig_747.g21854 Utricularia gibba HOM05D004719 ORTHO05D005519 7.3e-53 211.5 240 51.7
BraA03t10813Z Brassica rapa HOM05D004719 ORTHO05D005519 1.2e-52 210.7 249 49.8
PGSC0003DMG400028901 Solanum tuberosum HOM05D004719 ORTHO05D005519 2.1e-52 209.9 251 52.2
Psat5g080520 Pisum sativum HOM05D004719 ORTHO05D005519 6.2e-52 208.4 241 58.5
Solyc03g007520.3 Solanum lycopersicum HOM05D004719 ORTHO05D005519 6.2e-52 208.4 241 50.2
BcaNung06632 Brassica carinata HOM05D004719 ORTHO05D005519 8.1e-52 208.0 244 50.0
C03p17720 Brassica napus HOM05D004719 ORTHO05D005519 8.1e-52 208.0 244 50.0
Peaxi162Scf00904g00473 Petunia axillaris HOM05D004719 ORTHO05D005519 1.4e-51 207.2 247 49.4
Sopen03g003480 Solanum pennellii HOM05D004719 ORTHO05D005519 1.4e-51 207.2 241 49.8
BolC3t14182H Brassica oleracea HOM05D004719 ORTHO05D005519 3.1e-51 206.1 250 49.6
Manes.14G019414 Manihot esculenta HOM05D004719 ORTHO05D005519 4.0e-51 205.7 194 61.3
THA.LOC104811935 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 5.2e-51 205.3 243 55.6
ECA238G1719 Erigeron canadensis HOM05D000316 ORTHO05D001978 2.0e-50 203.4 214 53.7
Phvul.009G136700 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 2.6e-50 203.0 239 51.0
Lj1C1011G7 Lonicera japonica HOM05D004719 ORTHO05D005519 3.4e-50 202.6 141 73.8
Glyma.06G124600 Glycine max HOM05D004719 ORTHO05D005519 7.6e-50 201.4 239 50.6
CARHR266390 Cardamine hirsuta HOM05D004719 ORTHO05D005519 9.9e-50 201.1 239 51.9
CAN.G204.6 Capsicum annuum HOM05D004719 ORTHO05D005519 2.9e-49 199.5 156 64.7
AL8G28040 Arabidopsis lyrata HOM05D004719 ORTHO05D005519 6.4e-49 198.4 242 48.3
HanXRQChr07g0207131 Helianthus annuus HOM05D004719 ORTHO05D005519 8.4e-49 198.0 219 51.6
TPR.G33870 Trifolium pratense HOM05D004719 ORTHO05D005519 2.4e-48 196.4 223 62.3
VMungo1309G2489 Vigna mungo HOM05D004719 ORTHO05D005519 2.4e-48 196.4 273 44.7
BcaC01g06246 Brassica carinata HOM05D004719 ORTHO05D005519 5.4e-48 195.3 218 50.5
C09p43180 Brassica napus HOM05D004719 ORTHO05D005519 5.4e-48 195.3 239 48.1
Actinidia34185 Actinidia chinensis HOM05D004719 ORTHO05D005519 7.1e-48 194.9 153 66.0
AT5G53330 Arabidopsis thaliana HOM05D004719 ORTHO05D005519 7.1e-48 194.9 243 49.8
ATR0661G055 Amborella trichopoda HOM05D004719 ORTHO05D005519 9.2e-48 194.5 239 51.9
BolC9t57191H Brassica oleracea HOM05D004719 ORTHO05D005519 1.2e-47 194.1 239 47.7
HPP92_008641 Vanilla planifolia HOM05D004719 ORTHO05D005519 2.1e-47 193.4 251 47.8
BcaC04g20465 Brassica carinata HOM05D004719 ORTHO05D005519 2.7e-47 193.0 239 47.7
CAN.G108.16 Capsicum annuum HOM05D004719 ORTHO05D005519 4.6e-47 192.2 229 48.9
Peaxi162Scf00618g00530 Petunia axillaris HOM05D004719 ORTHO05D005519 7.8e-47 191.4 157 63.1
PGR142G4196 Punica granatum HOM05D004719 ORTHO05D005519 1.0e-46 191.0 240 50.4
A10p10840 Brassica napus HOM05D004719 ORTHO05D005519 1.3e-46 190.7 242 47.1
BcaB08g35695 Brassica carinata HOM05D004719 ORTHO05D005519 1.7e-46 190.3 240 46.7
BraA10t43168Z Brassica rapa HOM05D004719 ORTHO05D005519 1.5e-45 187.2 242 47.1
MBI06_g04286_MAGBIO Magnolia biondii HOM05D004719 ORTHO05D005519 2.5e-45 186.4 239 49.4
CDE08G1019 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 1.6e-44 183.7 243 46.1
FAN06G1194 Fragaria x ananassa HOM05D004719 ORTHO05D005519 1.2e-42 177.6 156 58.3
BcaNung07347 Brassica carinata HOM05D004719 ORTHO05D005519 9.9e-42 174.5 169 53.8
Os06g0160400 Oryza sativa ssp. japonica HOM05D004719 ORTHO05D005519 9.9e-42 174.5 264 43.2
CDE02G1124 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 3.8e-41 172.6 240 44.2
Zm00001eb376120 Zea mays HOM05D004719 ORTHO05D005519 1.9e-40 170.2 258 45.7
VMungo0647G2259 Vigna mungo HOM05D004719 ORTHO05D005519 2.1e-39 166.8 137 61.3
GSVIVG01028725001 Vitis vinifera HOM05D004719 ORTHO05D005519 8.7e-38 161.4 154 60.4
AagrBONN_evm.TU.Sc2ySwM_340.345 Anthoceros agrestis HOM05D004719 ORTHO05D005519 1.4e-32 144.1 227 41.0
Mapoly0050s0076 Marchantia polymorpha HOM05D004719 ORTHO05D005519 5.4e-32 142.1 249 41.0
SEGI_18632 Sequoiadendron giganteum HOM05D004719 ORTHO05D005519 1.1e-24 117.9 186 48.9
Pp3c1_11420 Physcomitrium patens HOM05D004719 ORTHO05D005519 2.4e-24 116.7 240 35.8
Dinv28349 Davidia involucrata HOM05D004719 ORTHO05D005519 1.9e-21 107.1 69 75.4
C03p17810 Brassica napus HOM05D004719 ORTHO05D005519 5.6e-21 105.5 143 49.0
BcaC01g06237 Brassica carinata HOM05D001465 ORTHO05D001434 6.2e-20 102.1 181 42.5
FAN18G3526 Fragaria x ananassa HOM05D006854 ORTHO05D210570 5.3e-19 99.0 58 75.9
QL04p064474 Quercus lobata HOM05D000013 ORTHO05D000011 9.0e-19 98.2 52 88.5
FvH4_7g16570 Fragaria vesca HOM05D004719 ORTHO05D005519 1.6e-15 87.4 52 75.0
FAN01G1848 Fragaria x ananassa HOM05D002077 ORTHO05D000818 4.6e-15 85.9 50 78.0
Solyc06g036500.1 Solanum lycopersicum HOM05D004719 ORTHO05D005519 2.5e-13 80.1 68 58.8
BolC3t14188H Brassica oleracea HOM05D004719 ORTHO05D005519 1.4e-11 74.3 95 45.3
FvH4_6g34200 Fragaria vesca HOM05D004719 ORTHO05D005519 2.4e-11 73.6 44 72.7
FAN16G3662 Fragaria x ananassa HOM05D004719 ORTHO05D005519 7.7e-10 68.6 47 66.0
CBR_g83324 Chara braunii HOM05D004719 ORTHO05D005519 1.1e-08 64.7 70 45.7
Sopen06g012490 Solanum pennellii HOM05D004719 ORTHO05D005519 1.9e-08 63.9 150 32.0
CDE09G0250 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 1.2e-07 61.2 44 61.4
FAN06G3132 Fragaria x ananassa HOM05D004719 ORTHO05D005519 3.6e-07 59.7 43 60.5
CBR_g84869 Chara braunii HOM05D004719 ORTHO05D005519 1.8e-06 57.4 41 63.4


User provided reference genes

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