Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0101201 Helianthus annuus HOM05D002864 ORTHO05D008485 1.4e-104 382.9 188 100.0
HanXRQMTg0579191 Helianthus annuus HOM05D002864 ORTHO05D008485 1.4e-104 382.9 188 100.0
Lsat_1_v5_gn_4_66001 Lactuca sativa HOM05D002864 ORTHO05D008485 1.6e-100 369.4 188 95.7
Lsat_1_v5_gn_7_96661 Lactuca sativa HOM05D002864 ORTHO05D008485 1.6e-100 369.4 188 95.7
CSS0047546 Camellia sinensis var. sinensis HOM05D002864 ORTHO05D008485 4.4e-93 344.7 188 91.0
CAN.G366.9 Capsicum annuum HOM05D002864 ORTHO05D008485 8.2e-92 340.5 188 89.9
CAN.G537.1 Capsicum annuum HOM05D002864 ORTHO05D008485 8.2e-92 340.5 188 89.9
CAN.G539.3 Capsicum annuum HOM05D002864 ORTHO05D008485 8.2e-92 340.5 188 89.9
CAN.G761.1 Capsicum annuum HOM05D002864 ORTHO05D008485 8.2e-92 340.5 188 89.9
Lj2A1230T121 Lonicera japonica HOM05D002864 ORTHO05D008485 1.1e-91 340.1 186 90.9
HanXRQChr01g0001471 Helianthus annuus HOM05D002864 ORTHO05D008485 2.6e-90 335.5 188 90.4
Solyc00g500362.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 1.9e-88 329.3 188 88.3
Nn1g09937 Nelumbo nucifera HOM05D002864 ORTHO05D008485 2.5e-88 328.9 188 87.2
Nn1g10176 Nelumbo nucifera HOM05D002864 ORTHO05D008485 2.5e-88 328.9 188 87.2
Cfa021370 Carpinus fangiana HOM05D002864 ORTHO05D008485 5.5e-88 327.8 186 88.2
CANSAT16G0032 Cannabis sativa HOM05D002864 ORTHO05D008485 9.4e-88 327.0 188 87.8
SalBow1G5070 Salvia bowleyana HOM05D002864 ORTHO05D008485 1.2e-87 326.6 186 86.6
CARHR288210 Cardamine hirsuta HOM05D002864 ORTHO05D008485 2.7e-87 325.5 188 87.2
Ah.10g028190 Amaranthus hybridus HOM05D002864 ORTHO05D007972 6.1e-87 324.3 187 86.1
Ah.10g028740 Amaranthus hybridus HOM05D002864 ORTHO05D007972 6.1e-87 324.3 187 86.1
AT2G07725 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 7.9e-87 323.9 188 87.2
ATMG00210 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 7.9e-87 323.9 188 87.2
CARHR282720 Cardamine hirsuta HOM05D002864 ORTHO05D008485 7.9e-87 323.9 188 87.2
A04p09410 Brassica napus HOM05D002864 ORTHO05D008485 1.0e-86 323.6 188 87.2
BolSC28t60372H Brassica oleracea HOM05D002864 ORTHO05D008485 1.0e-86 323.6 188 87.2
BraSC159t45731Z Brassica rapa HOM05D002864 ORTHO05D008485 1.0e-86 323.6 188 87.2
Thhalv10001274m.g Eutrema salsugineum HOM05D002864 ORTHO05D008485 1.4e-86 323.2 186 87.1
AUR62042335 Chenopodium quinoa HOM05D002864 ORTHO05D008485 1.8e-86 322.8 184 86.4
Lalb_Chr00c21g0405201 Lupinus albus HOM05D002864 ORTHO05D008485 1.1e-85 320.1 188 86.7
Lalb_Chr00c21g0405251 Lupinus albus HOM05D002864 ORTHO05D008485 1.1e-85 320.1 188 86.7
Lalb_Chr00c21g0405391 Lupinus albus HOM05D002864 ORTHO05D008485 1.1e-85 320.1 188 86.7
Lalb_Chr00c24g0407171 Lupinus albus HOM05D002864 ORTHO05D008485 1.1e-85 320.1 188 86.7
SHI26647 Sapria himalayana HOM05D002864 ORTHO05D008485 1.1e-85 320.1 185 85.9
TAR371G0939 Trochodendron aralioides HOM05D002864 ORTHO05D008485 1.1e-85 320.1 191 85.9
Sed0011141 Sechium edule HOM05D002864 ORTHO05D008485 1.5e-85 319.7 188 87.2
Sed0025017 Sechium edule HOM05D002864 ORTHO05D008485 1.5e-85 319.7 188 87.2
LjContig00315g0018050 Lotus japonicus HOM05D002864 ORTHO05D008485 2.6e-85 318.9 188 86.7
LjContig00439g0002067 Lotus japonicus HOM05D002864 ORTHO05D008485 2.6e-85 318.9 188 86.7
LjContig00446g0004288 Lotus japonicus HOM05D002864 ORTHO05D008485 2.6e-85 318.9 188 86.7
BraSC54t46369Z Brassica rapa HOM05D002864 ORTHO05D008485 4.4e-85 318.2 188 86.2
Lalb_Chr11g0070141 Lupinus albus HOM05D002864 ORTHO05D008485 1.7e-84 316.2 188 86.2
Lalb_Chr11g0070221 Lupinus albus HOM05D002864 ORTHO05D008485 1.7e-84 316.2 188 86.2
BolSC28t60317H Brassica oleracea HOM05D002864 ORTHO05D008485 3.7e-84 315.1 186 86.0
Psat0ss7220g0040 Pisum sativum HOM05D002864 ORTHO05D008485 3.7e-84 315.1 188 85.6
BraSC48t46332Z Brassica rapa HOM05D002864 ORTHO05D008485 1.8e-83 312.8 181 87.3
SGA_v2.0_scaffold420G51305 Striga asiatica HOM05D002864 ORTHO05D008485 4.1e-83 311.6 192 82.3
arahy.Tifrunner.gnm1.ann1.ID22MY Arachis hypogaea HOM05D002864 ORTHO05D008485 7.7e-82 307.4 188 84.0
Lalb_Chr00c21g0405111 Lupinus albus HOM05D002864 ORTHO05D008485 5.0e-81 304.7 187 84.5
Solyc00g500260.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 6.5e-81 304.3 174 87.9
unitig_87.g28031 Utricularia gibba HOM05D002864 ORTHO05D008485 6.5e-81 304.3 184 83.7
DCAR_032433 Daucus carota HOM05D002864 ORTHO05D008485 1.2e-79 300.1 185 83.2
Solyc00g500312.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 1.6e-79 299.7 174 86.8
PGR028G0017 Punica granatum HOM05D002864 ORTHO05D008485 6.1e-79 297.7 189 81.5
RhsimMtG0002800 Rhododendron simsii HOM05D002864 ORTHO05D008485 4.0e-78 295.0 173 85.5
BraSC48t46241Z Brassica rapa HOM05D002864 ORTHO05D008485 8.8e-78 293.9 185 81.6
Aqoxy12s038 Aquilegia oxysepala HOM05D002864 ORTHO05D008485 9.7e-77 290.4 188 79.8
Peaxi162Scf36888g00001 Petunia axillaris HOM05D002864 ORTHO05D008485 6.3e-76 287.7 168 86.3
Lj2P1221T99 Lonicera japonica HOM05D002864 ORTHO05D008485 4.1e-75 285.0 156 91.7
Rhsim07G0136600 Rhododendron simsii HOM05D002864 ORTHO05D008485 7.0e-75 284.3 188 79.8
Lalb_Chr07g0190471 Lupinus albus HOM05D002864 ORTHO05D008485 7.7e-74 280.8 188 78.2
Nitab4.5_0004300g0150 Nicotiana tabacum HOM05D002864 ORTHO05D008485 7.2e-72 274.2 188 76.1
HanXRQChr13g0389461 Helianthus annuus HOM05D002864 ORTHO05D008485 2.4e-67 259.2 151 87.4
ClCG09G013010 Citrullus lanatus HOM05D002864 ORTHO05D007972 5.4e-67 258.1 161 83.9
arahy.Tifrunner.gnm1.ann1.I2EFRY Arachis hypogaea HOM05D002864 ORTHO05D008485 9.1e-67 257.3 161 83.9
CDE02G2259 Ceratophyllum demersum HOM05D002864 ORTHO05D007972 1.7e-65 253.1 161 82.0
Gohir.A06G146200 Gossypium hirsutum HOM05D002864 ORTHO05D008485 2.3e-65 252.7 155 83.9
Lsat_1_v5_gn_7_25860 Lactuca sativa HOM05D002864 ORTHO05D008485 6.5e-65 251.1 129 95.3
SHI40661 Sapria himalayana HOM05D002864 ORTHO05D008485 2.5e-64 249.2 169 79.3
Ah.09g227250 Amaranthus hybridus HOM05D002864 ORTHO05D008485 1.0e-62 243.8 148 83.1
Lsat_1_v5_gn_5_71841 Lactuca sativa HOM05D002864 ORTHO05D008485 3.4e-61 238.8 133 91.0
HanXRQChr13g0393901 Helianthus annuus HOM05D002864 ORTHO05D008485 7.0e-59 231.1 115 100.0
Zm00001eb299530 Zea mays HOM05D002864 ORTHO05D008485 7.8e-50 201.1 191 55.0
ATR0709G086 Amborella trichopoda HOM05D002864 ORTHO05D008485 8.6e-49 197.6 135 73.3
Gohir.D12G077000 Gossypium hirsutum HOM05D002864 ORTHO05D008485 1.1e-46 190.7 181 61.3
arahy.Tifrunner.gnm1.ann1.3LP0N0 Arachis hypogaea HOM05D002864 ORTHO05D008485 1.2e-45 187.2 112 85.7
SEGI_29573 Sequoiadendron giganteum HOM05D002864 ORTHO05D008485 4.9e-44 181.8 179 58.7
RcHm_v2.0_Chr5g0061711 Rosa chinensis HOM05D002864 ORTHO05D008485 1.3e-41 173.7 183 56.3
Solyc09g050040.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 1.7e-41 173.3 110 81.8
HanXRQChr13g0389471 Helianthus annuus HOM05D002864 ORTHO05D008485 1.5e-40 170.2 86 94.2
FvH4_3g34030 Fragaria vesca HOM05D002864 ORTHO05D008485 6.2e-39 164.9 183 53.6
FAN11G1817 Fragaria x ananassa HOM05D002864 ORTHO05D008485 6.2e-39 164.9 183 53.6
FAN16G0826 Fragaria x ananassa HOM05D002864 ORTHO05D008485 1.8e-38 163.3 183 53.0
FAN21G0602 Fragaria x ananassa HOM05D002864 ORTHO05D008485 1.8e-38 163.3 183 53.0
Nitab4.5_0000120g0100 Nicotiana tabacum HOM05D002864 ORTHO05D008485 6.8e-38 161.4 188 53.2
CAN.G1542.4 Capsicum annuum HOM05D002864 ORTHO05D008485 5.4e-35 151.8 107 73.8
CAN.G826.1 Capsicum annuum HOM05D002864 ORTHO05D008485 3.5e-34 149.1 85 82.4
ClCG06G009270 Citrullus lanatus HOM05D002864 ORTHO05D008485 6.0e-34 148.3 97 78.4
MELO3C035260.2 Cucumis melo HOM05D002864 ORTHO05D008485 1.9e-32 143.3 110 70.9
MELO3C000759.2 Cucumis melo HOM05D002864 ORTHO05D008485 9.5e-32 141.0 110 70.0
Actinidia34819 Actinidia chinensis HOM05D002864 ORTHO05D008485 6.8e-30 134.8 72 88.9
arahy.Tifrunner.gnm1.ann1.IM9F8N Arachis hypogaea HOM05D002864 ORTHO05D008485 1.2e-29 134.0 84 78.6
PGSC0003DMG400033612 Solanum tuberosum HOM05D002864 ORTHO05D008485 7.6e-29 131.3 74 86.5
CAN.G1439.10 Capsicum annuum HOM05D002864 ORTHO05D008485 4.9e-28 128.6 81 76.5
CAN.G1001.40 Capsicum annuum HOM05D002864 ORTHO05D008485 6.4e-28 128.3 74 81.1
Atru.chr6.1811 Acer truncatum HOM05D002864 ORTHO05D008485 1.1e-27 127.5 72 84.7
Ca_08792_v3 Cicer arietinum L. HOM05D000255 ORTHO05D028863 1.4e-27 127.1 68 88.2
Ca_22173_v3 Cicer arietinum L. HOM05D005210 ORTHO05D010080 1.4e-27 127.1 68 88.2
MELO3C035317.2 Cucumis melo HOM05D002864 ORTHO05D008485 2.3e-25 119.8 109 62.4
MELO3C005021.2 Cucumis melo HOM05D002864 ORTHO05D008485 1.5e-24 117.1 109 61.5
arahy.Tifrunner.gnm1.ann1.G1F49J Arachis hypogaea HOM05D002864 ORTHO05D008485 2.4e-22 109.8 68 82.4
AagrBONN_evm.TU.Sc2ySwM_117.2676 Anthoceros agrestis HOM05D002864 ORTHO05D008485 6.9e-22 108.2 180 36.7
Nitab4.5_0000684g0100 Nicotiana tabacum HOM05D000729 ORTHO05D001063 9.0e-22 107.8 69 73.9
ATR0015G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 2.6e-21 106.3 68 73.5
ATR0091G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 3.4e-21 105.9 74 71.6
ATR0104G021 Amborella trichopoda HOM05D002864 ORTHO05D008485 4.4e-21 105.5 70 71.4
CAN.G502.17 Capsicum annuum HOM05D002864 ORTHO05D008485 4.9e-20 102.1 71 71.8
ATR0573G003 Amborella trichopoda HOM05D002864 ORTHO05D008485 3.2e-19 99.4 65 70.8
ATR0573G002 Amborella trichopoda HOM05D007099 ORTHO05D009081 4.6e-18 95.5 61 75.4
Nitab4.5_0024895g0040 Nicotiana tabacum HOM05D002864 ORTHO05D008485 4.6e-18 95.5 55 83.6
ATR1100G026 Amborella trichopoda HOM05D002864 ORTHO05D008485 2.3e-17 93.2 55 78.2
ATR0004G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 2.5e-16 89.7 64 62.5
ATR0959G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 4.8e-15 85.5 49 79.6
Solyc11g043190.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 2.6e-13 79.7 50 78.0
CAN.G1439.9 Capsicum annuum HOM05D002864 ORTHO05D008485 7.6e-13 78.2 49 75.5
Mapoly0023s0175 Marchantia polymorpha HOM05D002864 ORTHO05D008485 1.3e-12 77.4 63 68.3
ClCG02G008120 Citrullus lanatus HOM05D002864 ORTHO05D008485 6.4e-12 75.1 54 75.9
Medtr2g096500 Medicago truncatula HOM05D006496 ORTHO05D008485 9.3e-11 71.2 53 66.0
MELO3C013035.2 Cucumis melo HOM05D002864 ORTHO05D008485 3.5e-10 69.3 68 54.4
Solyc01g049950.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 6.0e-10 68.6 60 66.7
Nitab4.5_0000317g0150 Nicotiana tabacum HOM05D002578 ORTHO05D002698 1.5e-08 63.9 41 73.2
Rhsim05G0013600 Rhododendron simsii HOM05D007908 ORTHO05D009653 1.5e-08 63.9 42 76.2
ATR0135G003 Amborella trichopoda HOM05D002864 ORTHO05D008485 2.5e-08 63.2 36 80.6
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 5.6e-08 62.0 48 64.6
C09p10440 Brassica napus HOM05D002864 ORTHO05D008485 2.8e-07 59.7 34 79.4
ECA240G4469 Erigeron canadensis HOM05D000041 ORTHO05D015639 4.8e-07 58.9 97 36.1
Phvul.011G109300 Phaseolus vulgaris HOM05D007099 ORTHO05D009081 6.2e-07 58.5 36 66.7
MELO3C031088.2 Cucumis melo HOM05D002864 ORTHO05D008485 3.1e-06 56.2 40 65.0
Pp3c2_23470 Physcomitrium patens HOM05D002864 ORTHO05D008485 3.1e-06 56.2 56 62.5


User provided reference genes

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