Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0568571 Helianthus annuus HOM05D002450 ORTHO05D002953 1.8e-44 182.2 90 100.0
Lsat_1_v5_gn_4_130920 Lactuca sativa HOM05D002450 ORTHO05D002953 2.2e-26 122.1 79 74.7
HanXRQChr17g0568431 Helianthus annuus HOM05D002450 ORTHO05D002953 6.4e-26 120.6 82 72.0
HanXRQChr06g0184031 Helianthus annuus HOM05D002450 ORTHO05D002953 2.4e-25 118.6 87 69.0
ECA232G4701 Erigeron canadensis HOM05D002450 ORTHO05D002953 1.0e-23 113.2 88 63.6
ECA232G4759 Erigeron canadensis HOM05D002450 ORTHO05D002953 1.2e-21 106.3 92 57.6
HanXRQChr17g0568081 Helianthus annuus HOM05D002450 ORTHO05D002953 4.4e-19 97.8 75 61.3
HanXRQChr17g0568561 Helianthus annuus HOM05D002450 ORTHO05D002953 4.4e-19 97.8 75 61.3
Dinv44973 Davidia involucrata HOM05D002450 ORTHO05D002953 1.4e-17 92.8 83 57.8
CSS0019848 Camellia sinensis var. sinensis HOM05D002450 ORTHO05D002953 1.9e-17 92.4 83 57.8
Cc10_g05590 Coffea canephora HOM05D002450 ORTHO05D002953 5.4e-17 90.9 70 64.3
Dinv39244 Davidia involucrata HOM05D002450 ORTHO05D002953 7.1e-17 90.5 77 59.7
HanXRQChr09g0266561 Helianthus annuus HOM05D002450 ORTHO05D002953 1.2e-16 89.7 75 57.3
Actinidia10186 Actinidia chinensis HOM05D002450 ORTHO05D002953 7.8e-16 87.0 83 51.8
Actinidia22682 Actinidia chinensis HOM05D002450 ORTHO05D002953 1.0e-15 86.7 83 51.8
Lj4C69T6 Lonicera japonica HOM05D002450 ORTHO05D002953 1.3e-15 86.3 88 52.3
Oeu057366.3 Olea europaea HOM05D002450 ORTHO05D002953 1.3e-15 86.3 66 62.1
Nitab4.5_0000934g0090 Nicotiana tabacum HOM05D002450 ORTHO05D002953 1.1e-14 83.2 63 60.3
RcHm_v2.0_Chr7g0216291 Rosa chinensis HOM05D002450 ORTHO05D002953 1.1e-14 83.2 79 53.2
MSTRG.24365 Avicennia marina HOM05D002450 ORTHO05D002953 1.5e-14 82.8 62 61.3
DCAR_008851 Daucus carota HOM05D002450 ORTHO05D002953 1.5e-14 82.8 84 48.8
MD06G1005900 Malus domestica HOM05D002450 ORTHO05D002953 1.5e-14 82.8 88 51.1
Prupe.5G007400 Prunus persica HOM05D002450 ORTHO05D002953 1.5e-14 82.8 83 51.8
Migut.N02766 Erythranthe guttata HOM05D002450 ORTHO05D002953 1.9e-14 82.4 67 56.7
Peaxi162Scf00081g01329 Petunia axillaris HOM05D002450 ORTHO05D002953 2.5e-14 82.0 63 58.7
Rhsim06G0060700 Rhododendron simsii HOM05D002450 ORTHO05D002953 4.3e-14 81.3 83 47.0
FAN13G2461 Fragaria x ananassa HOM05D002450 ORTHO05D002953 7.3e-14 80.5 79 51.9
Aqoxy2G03346 Aquilegia oxysepala HOM05D002450 ORTHO05D002953 9.6e-14 80.1 81 48.1
CAN.G1054.28 Capsicum annuum HOM05D002450 ORTHO05D002953 9.6e-14 80.1 62 58.1
FvH4_5g25820 Fragaria vesca HOM05D002450 ORTHO05D002953 9.6e-14 80.1 79 51.9
FAN04G2208 Fragaria x ananassa HOM05D002450 ORTHO05D002953 9.6e-14 80.1 79 51.9
Thecc.08G091300 Theobroma cacao HOM05D002450 ORTHO05D002953 9.6e-14 80.1 88 48.9
DCAR_012809 Daucus carota HOM05D002450 ORTHO05D002953 1.2e-13 79.7 84 47.6
FAN08G0311 Fragaria x ananassa HOM05D002450 ORTHO05D002953 1.2e-13 79.7 79 51.9
FAN18G3361 Fragaria x ananassa HOM05D002450 ORTHO05D002953 1.2e-13 79.7 79 51.9
Nn5g30523 Nelumbo nucifera HOM05D002450 ORTHO05D002953 1.2e-13 79.7 89 49.4
TAR381G1265 Trochodendron aralioides HOM05D002450 ORTHO05D002953 1.2e-13 79.7 81 51.9
PGR031G3734 Punica granatum HOM05D002450 ORTHO05D002953 1.6e-13 79.3 84 52.4
Solyc04g078050.3 Solanum lycopersicum HOM05D002450 ORTHO05D002953 2.1e-13 79.0 63 57.1
Sopen04g031640 Solanum pennellii HOM05D002450 ORTHO05D002953 2.1e-13 79.0 63 57.1
PGSC0003DMG401021510 Solanum tuberosum HOM05D002450 ORTHO05D002953 2.1e-13 79.0 63 57.1
Ciclev10000177m.g Citrus clementina HOM05D002450 ORTHO05D002953 2.8e-13 78.6 87 48.3
Nitab4.5_0003228g0010 Nicotiana tabacum HOM05D002450 ORTHO05D002953 2.8e-13 78.6 64 59.4
Aqoxy1G00817 Aquilegia oxysepala HOM05D002450 ORTHO05D002953 4.7e-13 77.8 81 48.1
Eucgr.C02521 Eucalyptus grandis HOM05D002450 ORTHO05D002953 4.7e-13 77.8 83 49.4
COL.COLO4_28529 Corchorus olitorius HOM05D002450 ORTHO05D002953 6.2e-13 77.4 83 47.0
Duzib041G0010 Durio zibethinus HOM05D002450 ORTHO05D002953 6.2e-13 77.4 83 47.0
Duzib093G1995 Durio zibethinus HOM05D002450 ORTHO05D002953 6.2e-13 77.4 83 47.0
Cpa.g.sc123.17 Carica papaya HOM05D002450 ORTHO05D002953 8.1e-13 77.0 86 46.5
Gohir.A05G263000 Gossypium hirsutum HOM05D002450 ORTHO05D002953 8.1e-13 77.0 83 48.2
Manes.16G088600 Manihot esculenta HOM05D002450 ORTHO05D002953 8.1e-13 77.0 79 51.9
Nitab4.5_0000197g0090 Nicotiana tabacum HOM05D002450 ORTHO05D002953 8.1e-13 77.0 89 47.2
A06p48030 Brassica napus HOM05D002450 ORTHO05D002953 1.1e-12 76.6 88 51.1
C07p25690 Brassica napus HOM05D002450 ORTHO05D002953 1.1e-12 76.6 88 51.1
BolC7t43088H Brassica oleracea HOM05D002450 ORTHO05D002953 1.1e-12 76.6 88 51.1
BraA06t27673Z Brassica rapa HOM05D002450 ORTHO05D002953 1.1e-12 76.6 88 51.1
Eucgr.F02266 Eucalyptus grandis HOM05D002450 ORTHO05D002953 1.1e-12 76.6 85 49.4
Gohir.A01G121000 Gossypium hirsutum HOM05D002450 ORTHO05D002953 1.1e-12 76.6 87 47.1
Gohir.D01G108500 Gossypium hirsutum HOM05D002450 ORTHO05D002953 1.1e-12 76.6 87 47.1
Gorai.002G132700 Gossypium raimondii HOM05D002450 ORTHO05D002953 1.1e-12 76.6 87 47.1
Sp2g07910 Schrenkiella parvula HOM05D002450 ORTHO05D002953 1.1e-12 76.6 88 50.0
TAR625G0542 Trochodendron aralioides HOM05D002450 ORTHO05D002953 1.1e-12 76.6 83 48.2
THA.LOC104812586 Tarenaya hassleriana HOM05D002450 ORTHO05D002953 1.4e-12 76.3 84 47.6
BcaC06g34680 Brassica carinata HOM05D002450 ORTHO05D002953 1.8e-12 75.9 88 51.1
CiPaw.07G177000 Carya illinoinensis HOM05D002450 ORTHO05D002953 3.1e-12 75.1 87 43.7
PSO541G0144 Papaver somniferum HOM05D002450 ORTHO05D002953 3.1e-12 75.1 70 50.0
PSO675G5640 Papaver somniferum HOM05D002450 ORTHO05D002953 3.1e-12 75.1 70 50.0
BcaB07g30594 Brassica carinata HOM05D002450 ORTHO05D002953 4.0e-12 74.7 84 46.4
Thhalv10003149m.g Eutrema salsugineum HOM05D002450 ORTHO05D002953 4.0e-12 74.7 88 45.5
Nn1g04614 Nelumbo nucifera HOM05D002450 ORTHO05D002953 4.0e-12 74.7 85 47.1
SGA_v2.0_scaffold14G06941 Striga asiatica HOM05D002450 ORTHO05D002953 4.0e-12 74.7 63 55.6
BcaC03g16563 Brassica carinata HOM05D002450 ORTHO05D002953 6.9e-12 73.9 89 49.4
A02p27680 Brassica napus HOM05D002450 ORTHO05D002953 6.9e-12 73.9 89 49.4
C02p43760 Brassica napus HOM05D002450 ORTHO05D002953 6.9e-12 73.9 89 49.4
BolC2t10422H Brassica oleracea HOM05D002450 ORTHO05D002953 6.9e-12 73.9 89 49.4
BraA02t07807Z Brassica rapa HOM05D002450 ORTHO05D002953 6.9e-12 73.9 89 49.4
Gohir.D05G265200 Gossypium hirsutum HOM05D002450 ORTHO05D002953 6.9e-12 73.9 83 45.8
Gorai.009G277000 Gossypium raimondii HOM05D002450 ORTHO05D002953 6.9e-12 73.9 83 45.8
AL8G17530 Arabidopsis lyrata HOM05D002450 ORTHO05D002953 9.0e-12 73.6 94 47.9
AT5G43130 Arabidopsis thaliana HOM05D002450 ORTHO05D002953 1.2e-11 73.2 93 48.4
EL10Ac2g04298 Beta vulgaris HOM05D002450 ORTHO05D002953 1.2e-11 73.2 62 54.8
CARHR180850 Cardamine hirsuta HOM05D002450 ORTHO05D002953 1.2e-11 73.2 81 49.4
GSVIVG01009365001 Vitis vinifera HOM05D002450 ORTHO05D002953 1.2e-11 73.2 84 48.8
Atru.chr9.2194 Acer truncatum HOM05D002450 ORTHO05D002953 1.5e-11 72.8 77 49.4
Aa31LG9G13220 Aethionema arabicum HOM05D002450 ORTHO05D002953 2.0e-11 72.4 87 48.3
Sc05g0001410 Simmondsia chinensis HOM05D002450 ORTHO05D002953 2.0e-11 72.4 73 50.7
Carub.0008s0559 Capsella rubella HOM05D002450 ORTHO05D002953 3.4e-11 71.6 88 45.5
Cfa003416 Carpinus fangiana HOM05D002450 ORTHO05D002953 3.4e-11 71.6 87 43.7
Rhsim07G0221700 Rhododendron simsii HOM05D002450 ORTHO05D002953 3.4e-11 71.6 60 53.3
vmacro22069 Vaccinium macrocarpon HOM05D002450 ORTHO05D002953 3.4e-11 71.6 65 47.7
vmacro22793 Vaccinium macrocarpon HOM05D002450 ORTHO05D002953 3.4e-11 71.6 65 47.7
Hund26558 Selenicereus undatus HOM05D002450 ORTHO05D002953 4.4e-11 71.2 80 48.8
Haze_26082 Corylus avellana HOM05D002450 ORTHO05D002953 5.8e-11 70.9 87 42.5
Manes.03G054700 Manihot esculenta HOM05D002450 ORTHO05D002953 5.8e-11 70.9 79 48.1
Sed0017090 Sechium edule HOM05D002450 ORTHO05D002953 5.8e-11 70.9 83 42.2
ClCG09G012130 Citrullus lanatus HOM05D002450 ORTHO05D002953 9.9e-11 70.1 83 41.0
Sc24g0003290 Simmondsia chinensis HOM05D002450 ORTHO05D002953 9.9e-11 70.1 70 54.3
Ah.02g112100 Amaranthus hybridus HOM05D002450 ORTHO05D002953 1.3e-10 69.7 76 46.1
CsaV3_3G049350 Cucumis sativus L. HOM05D002450 ORTHO05D002953 1.7e-10 69.3 83 41.0
AUR62011845 Chenopodium quinoa HOM05D002450 ORTHO05D002953 2.9e-10 68.6 85 45.9
Potri.014G018000 Populus trichocarpa HOM05D002450 ORTHO05D002953 2.9e-10 68.6 87 42.5
QL12p037610 Quercus lobata HOM05D002450 ORTHO05D002953 2.9e-10 68.6 75 48.0
HPP92_026568 Vanilla planifolia HOM05D002450 ORTHO05D002953 2.9e-10 68.6 60 48.3
BcaC06g31721 Brassica carinata HOM05D002450 ORTHO05D002953 3.8e-10 68.2 74 47.3
MELO3C003391.2 Cucumis melo HOM05D002450 ORTHO05D002953 4.9e-10 67.8 83 39.8
Sed0009786 Sechium edule HOM05D002450 ORTHO05D002953 4.9e-10 67.8 83 43.4
Lalb_Chr14g0368301 Lupinus albus HOM05D002450 ORTHO05D002953 6.4e-10 67.4 74 43.2
Potri.002G119900 Populus trichocarpa HOM05D002450 ORTHO05D002953 8.4e-10 67.0 69 47.8
Lalb_Chr24g0399411 Lupinus albus HOM05D002450 ORTHO05D002953 1.1e-09 66.6 74 40.5
Glyma.14G087700 Glycine max HOM05D002450 ORTHO05D002953 2.4e-09 65.5 83 36.1
Glyma.17G236600 Glycine max HOM05D002450 ORTHO05D002953 2.4e-09 65.5 83 36.1
Aqoxy1G00816 Aquilegia oxysepala HOM05D002450 ORTHO05D002953 4.2e-09 64.7 81 40.7
TPR.G35644 Trifolium pratense HOM05D002450 ORTHO05D002953 4.2e-09 64.7 84 38.1
Ca_25258_v3 Cicer arietinum L. HOM05D002450 ORTHO05D002953 5.4e-09 64.3 84 38.1
TPR.G2904 Trifolium pratense HOM05D002450 ORTHO05D002953 5.4e-09 64.3 87 37.9
VMungo0647G0877 Vigna mungo HOM05D002450 ORTHO05D002953 5.4e-09 64.3 83 37.3
Ca_15910_v3 Cicer arietinum L. HOM05D002450 ORTHO05D002953 7.1e-09 63.9 84 38.1
Lj5g0004805 Lotus japonicus HOM05D002450 ORTHO05D002953 7.1e-09 63.9 83 37.3
Psat5g038160 Pisum sativum HOM05D002450 ORTHO05D002953 7.1e-09 63.9 84 38.1
TPR.G33705 Trifolium pratense HOM05D002450 ORTHO05D002953 7.1e-09 63.9 84 38.1
Phvul.001G026300 Phaseolus vulgaris HOM05D002450 ORTHO05D002953 9.3e-09 63.5 83 37.3
Migut.C00497 Erythranthe guttata HOM05D002450 ORTHO05D002953 1.2e-08 63.2 59 44.1
CANSAT54G1944 Cannabis sativa HOM05D002450 ORTHO05D002953 1.6e-08 62.8 86 38.4
Glyma.04G044700 Glycine max HOM05D002450 ORTHO05D002953 2.1e-08 62.4 83 36.1
Sabra14G0011900 Salix brachista HOM05D002450 ORTHO05D002953 2.1e-08 62.4 85 35.3
Zm00001eb123340 Zea mays HOM05D002450 ORTHO05D002953 2.7e-08 62.0 79 38.0
PGR031G1138 Punica granatum HOM05D002450 ORTHO05D002953 3.5e-08 61.6 80 42.5
arahy.Tifrunner.gnm1.ann1.27GD0X Arachis hypogaea HOM05D002450 ORTHO05D002953 4.6e-08 61.2 83 36.1
Glyma.06G045200 Glycine max HOM05D002450 ORTHO05D002953 4.6e-08 61.2 83 34.9
Os02g0654400 Oryza sativa ssp. japonica HOM05D002450 ORTHO05D002953 7.8e-08 60.5 86 37.2
Atru.chr13.809 Acer truncatum HOM05D002450 ORTHO05D002953 1.0e-07 60.1 61 44.3
Lj1g0026999 Lotus japonicus HOM05D002450 ORTHO05D002953 1.0e-07 60.1 63 41.3
THA.LOC104804740 Tarenaya hassleriana HOM05D002450 ORTHO05D002953 1.7e-07 59.3 88 37.5
THA.LOC104814186 Tarenaya hassleriana HOM05D002450 ORTHO05D002953 1.7e-07 59.3 88 37.5
Prupe.6G138300 Prunus persica HOM05D002450 ORTHO05D002953 3.9e-07 58.2 75 42.7
arahy.Tifrunner.gnm1.ann1.Z5BLZE Arachis hypogaea HOM05D002450 ORTHO05D002953 5.1e-07 57.8 83 34.9
CDE07G0359 Ceratophyllum demersum HOM05D002450 ORTHO05D002953 1.5e-06 56.2 70 37.1
BraA07t28949Z Brassica rapa HOM05D002450 ORTHO05D002953 1.9e-06 55.8 76 38.2
BcaB03g13972 Brassica carinata HOM05D002450 ORTHO05D002953 2.5e-06 55.5 80 36.2
ATR0665G484 Amborella trichopoda HOM05D002450 ORTHO05D002953 3.3e-06 55.1 83 36.1
A07p11620 Brassica napus HOM05D002450 ORTHO05D002953 4.3e-06 54.7 76 36.8
Ah.11g049460 Amaranthus hybridus HOM05D002450 ORTHO05D002953 7.3e-06 53.9 63 39.7
BcaC06g35313 Brassica carinata HOM05D002450 ORTHO05D002953 7.3e-06 53.9 80 35.0
C07p17530 Brassica napus HOM05D002450 ORTHO05D002953 7.3e-06 53.9 80 35.0
BolC7t42261H Brassica oleracea HOM05D002450 ORTHO05D002953 7.3e-06 53.9 80 35.0


User provided reference genes

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