Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0565071 Helianthus annuus HOM05D003008 ORTHO05D003346 7.9e-91 337.0 163 100.0
HanXRQChr01g0020641 Helianthus annuus HOM05D003008 ORTHO05D003346 2.3e-26 122.9 160 49.4
SalBow8G1512 Salvia bowleyana HOM05D003008 ORTHO05D003346 6.8e-26 121.3 160 45.6
Gohir.A05G112501 Gossypium hirsutum HOM05D003008 ORTHO05D003346 8.9e-26 120.9 160 45.0
Gohir.D05G113000 Gossypium hirsutum HOM05D003008 ORTHO05D003346 2.6e-25 119.4 160 44.4
Duzib235G1093 Durio zibethinus HOM05D003008 ORTHO05D003346 3.4e-25 119.0 160 44.4
Gorai.009G117100 Gossypium raimondii HOM05D003008 ORTHO05D003346 5.7e-25 118.2 160 43.8
Atru.chr10.699 Acer truncatum HOM05D003008 ORTHO05D003346 7.5e-25 117.9 160 44.4
Atru.chr2.1568 Acer truncatum HOM05D003008 ORTHO05D003346 7.5e-25 117.9 160 44.4
AUR62025821 Chenopodium quinoa HOM05D003008 ORTHO05D003346 7.5e-25 117.9 160 43.8
AUR62029886 Chenopodium quinoa HOM05D003008 ORTHO05D003346 7.5e-25 117.9 160 43.8
Thecc.06G011200 Theobroma cacao HOM05D003008 ORTHO05D003346 9.8e-25 117.5 160 45.0
Migut.M01920 Erythranthe guttata HOM05D003008 ORTHO05D003346 1.3e-24 117.1 160 46.2
Oeu060320.2 Olea europaea HOM05D003008 ORTHO05D003346 1.3e-24 117.1 160 46.2
THA.LOC104798583 Tarenaya hassleriana HOM05D003008 ORTHO05D003346 1.3e-24 117.1 160 45.6
CANSAT35G1991 Cannabis sativa HOM05D003008 ORTHO05D003346 1.7e-24 116.7 160 44.4
Lsat_1_v5_gn_1_91720 Lactuca sativa HOM05D003008 ORTHO05D003346 1.7e-24 116.7 155 47.7
HanXRQChr11g0340941 Helianthus annuus HOM05D003008 ORTHO05D003346 2.2e-24 116.3 161 45.3
Eucgr.D01628 Eucalyptus grandis HOM05D003008 ORTHO05D003346 2.8e-24 115.9 160 45.6
EL10Ac8g19523 Beta vulgaris HOM05D003008 ORTHO05D003346 4.9e-24 115.2 160 43.1
ClCG03G008470 Citrullus lanatus HOM05D003008 ORTHO05D003346 4.9e-24 115.2 160 44.4
ECA248G0148 Erigeron canadensis HOM05D003008 ORTHO05D003346 4.9e-24 115.2 161 43.5
MD10G1243800 Malus domestica HOM05D003008 ORTHO05D003346 4.9e-24 115.2 160 43.8
Prupe.4G099700 Prunus persica HOM05D003008 ORTHO05D003346 4.9e-24 115.2 160 43.1
SGA_v2.0_scaffold1G00291 Striga asiatica HOM05D003008 ORTHO05D003346 4.9e-24 115.2 160 43.1
GSVIVG01021728001 Vitis vinifera HOM05D003008 ORTHO05D003346 4.9e-24 115.2 160 44.4
Cc09_g07360 Coffea canephora HOM05D003008 ORTHO05D003346 6.3e-24 114.8 160 43.8
Haze_13591 Corylus avellana HOM05D003008 ORTHO05D003346 6.3e-24 114.8 160 43.8
Actinidia33712 Actinidia chinensis HOM05D003008 ORTHO05D003346 1.4e-23 113.6 160 43.1
Ah.09g232330 Amaranthus hybridus HOM05D000070 ORTHO05D003346 1.4e-23 113.6 151 45.7
Carub.0001s2896 Capsella rubella HOM05D003008 ORTHO05D003346 1.4e-23 113.6 160 40.6
Glyma.15G134500 Glycine max HOM05D003008 ORTHO05D003346 1.4e-23 113.6 160 43.1
CAN.G39.24 Capsicum annuum HOM05D003008 ORTHO05D003346 1.8e-23 113.2 160 43.8
CDE02G0274 Ceratophyllum demersum HOM05D003008 ORTHO05D003346 1.8e-23 113.2 150 44.7
MELO3C002865.2 Cucumis melo HOM05D003008 ORTHO05D003346 1.8e-23 113.2 160 43.8
CsaV3_1G037560 Cucumis sativus L. HOM05D003008 ORTHO05D003346 1.8e-23 113.2 160 43.8
Nitab4.5_0000076g0040 Nicotiana tabacum HOM05D003008 ORTHO05D003346 1.8e-23 113.2 151 44.4
Aa31LG6G11900 Aethionema arabicum HOM05D003008 ORTHO05D003346 2.4e-23 112.8 160 42.5
CSS0037242 Camellia sinensis var. sinensis HOM05D003008 ORTHO05D003346 2.4e-23 112.8 160 43.8
Medtr2g031620 Medicago truncatula HOM05D003008 ORTHO05D003346 2.4e-23 112.8 160 41.9
SGA_v2.0_scaffold223G42877 Striga asiatica HOM05D003008 ORTHO05D003346 2.4e-23 112.8 160 43.8
TWI15G0228 Tripterygium wilfordii HOM05D003008 ORTHO05D003346 2.4e-23 112.8 160 43.8
Sp1g26580 Schrenkiella parvula HOM05D003008 ORTHO05D003346 3.2e-23 112.5 160 43.8
AL1G44740 Arabidopsis lyrata HOM05D003008 ORTHO05D003346 4.1e-23 112.1 160 40.0
AT1G30680 Arabidopsis thaliana HOM05D003008 ORTHO05D003346 4.1e-23 112.1 160 40.0
Ciclev10014667m.g Citrus clementina HOM05D003008 ORTHO05D003346 4.1e-23 112.1 160 41.9
Glyma.09G028600 Glycine max HOM05D003008 ORTHO05D003346 4.1e-23 112.1 160 42.5
Manes.14G125700 Manihot esculenta HOM05D003008 ORTHO05D003346 4.1e-23 112.1 160 43.1
Sc10g0009650 Simmondsia chinensis HOM05D003008 ORTHO05D003346 5.4e-23 111.7 160 42.5
TPR.G15179 Trifolium pratense HOM05D003008 ORTHO05D003346 5.4e-23 111.7 160 43.1
BcaC05g27092 Brassica carinata HOM05D003008 ORTHO05D003346 7.0e-23 111.3 160 43.1
C05p29740 Brassica napus HOM05D003008 ORTHO05D003346 7.0e-23 111.3 160 43.1
BolC5t31702H Brassica oleracea HOM05D003008 ORTHO05D003346 7.0e-23 111.3 160 43.1
Lj6g0020929 Lotus japonicus HOM05D003008 ORTHO05D003346 7.0e-23 111.3 160 41.9
Phvul.006G124400 Phaseolus vulgaris HOM05D003008 ORTHO05D003346 7.0e-23 111.3 160 42.5
SHI24823 Sapria himalayana HOM05D003008 ORTHO05D003346 7.0e-23 111.3 160 41.2
BcaB07g32707 Brassica carinata HOM05D003008 ORTHO05D003346 9.2e-23 110.9 160 42.5
vmacro03472 Vaccinium macrocarpon HOM05D003008 ORTHO05D003346 9.2e-23 110.9 160 42.5
arahy.Tifrunner.gnm1.ann1.SN2S9U Arachis hypogaea HOM05D003008 ORTHO05D003346 1.2e-22 110.5 161 42.2
Ca_25498_v3 Cicer arietinum L. HOM05D003008 ORTHO05D003346 1.2e-22 110.5 160 43.1
Lj2A336T37 Lonicera japonica HOM05D003008 ORTHO05D003346 1.2e-22 110.5 160 43.8
Sed0021502 Sechium edule HOM05D003008 ORTHO05D003346 1.2e-22 110.5 160 42.5
CiPaw.03G113700 Carya illinoinensis HOM05D003008 ORTHO05D003346 1.6e-22 110.2 160 43.1
DCAR_000835 Daucus carota HOM05D003008 ORTHO05D003346 1.6e-22 110.2 160 42.5
Lalb_Chr18g0058241 Lupinus albus HOM05D003008 ORTHO05D003346 1.6e-22 110.2 160 41.2
PGR044G1782 Punica granatum HOM05D003008 ORTHO05D003346 1.6e-22 110.2 160 42.5
Sabra16G0313000 Salix brachista HOM05D003008 ORTHO05D003346 1.6e-22 110.2 160 42.5
VMungo0540G1323 Vigna mungo HOM05D003008 ORTHO05D003346 1.6e-22 110.2 151 43.7
A09p35720 Brassica napus HOM05D003008 ORTHO05D003346 2.0e-22 109.8 160 42.5
BraA09t39097Z Brassica rapa HOM05D003008 ORTHO05D003346 2.0e-22 109.8 160 42.5
Thhalv10006950m.g Eutrema salsugineum HOM05D003008 ORTHO05D003346 2.0e-22 109.8 160 42.5
Peaxi162Scf00155g00316 Petunia axillaris HOM05D003008 ORTHO05D003346 2.0e-22 109.8 160 41.9
Potri.001G461300 Populus trichocarpa HOM05D003008 ORTHO05D003346 2.0e-22 109.8 160 42.5
Dinv08829 Davidia involucrata HOM05D003008 ORTHO05D003346 2.7e-22 109.4 160 41.2
Psat1g164800 Pisum sativum HOM05D003008 ORTHO05D003346 2.7e-22 109.4 160 41.9
Sopen02g006420 Solanum pennellii HOM05D003008 ORTHO05D003346 2.7e-22 109.4 161 44.1
CDE01G0377 Ceratophyllum demersum HOM05D003008 ORTHO05D003346 3.5e-22 109.0 151 43.0
Nitab4.5_0002005g0070 Nicotiana tabacum HOM05D003008 ORTHO05D003346 3.5e-22 109.0 138 45.7
Nn7g37799 Nelumbo nucifera HOM05D003008 ORTHO05D003346 4.5e-22 108.6 160 41.9
ATR0763G210 Amborella trichopoda HOM05D003008 ORTHO05D003346 5.9e-22 108.2 154 43.5
CARHR030150 Cardamine hirsuta HOM05D003008 ORTHO05D003346 1.0e-21 107.5 160 40.0
Lalb_Chr15g0088941 Lupinus albus HOM05D003008 ORTHO05D003346 1.0e-21 107.5 160 40.6
RcHm_v2.0_Chr5g0018171 Rosa chinensis HOM05D003008 ORTHO05D003346 1.0e-21 107.5 161 42.2
Solyc02g022830.3 Solanum lycopersicum HOM05D003008 ORTHO05D003346 1.3e-21 107.1 161 43.5
FvH4_3g11220 Fragaria vesca HOM05D003008 ORTHO05D003346 1.7e-21 106.7 161 42.2
COL.COLO4_22894 Corchorus olitorius HOM05D003008 ORTHO05D003346 2.3e-21 106.3 54 85.2
Zm00001eb274090 Zea mays HOM05D003008 ORTHO05D003346 2.3e-21 106.3 160 41.9
DCAR_007820 Daucus carota HOM05D003008 ORTHO05D003346 2.9e-21 105.9 152 42.1
Pp3c12_26070 Physcomitrium patens HOM05D003008 ORTHO05D003346 3.9e-21 105.5 161 40.4
arahy.Tifrunner.gnm1.ann1.447SJP Arachis hypogaea HOM05D003008 ORTHO05D003346 5.0e-21 105.1 164 41.5
arahy.Tifrunner.gnm1.ann1.WH7KDQ Arachis hypogaea HOM05D003008 ORTHO05D003346 5.0e-21 105.1 164 41.5
unitig_92.g28176 Utricularia gibba HOM05D003008 ORTHO05D003346 5.0e-21 105.1 161 41.0
PSO541G5492 Papaver somniferum HOM05D003008 ORTHO05D003346 8.6e-21 104.4 160 40.6
PSO675G7488 Papaver somniferum HOM05D003008 ORTHO05D003346 8.6e-21 104.4 160 40.6
Aqoxy1G01512 Aquilegia oxysepala HOM05D003008 ORTHO05D003346 1.1e-20 104.0 160 40.0
FAN25G1988 Fragaria x ananassa HOM05D003008 ORTHO05D003346 1.9e-20 103.2 161 39.1
FAN16G0127 Fragaria x ananassa HOM05D003008 ORTHO05D003346 4.3e-20 102.1 151 42.4
SMO364G0389 Selaginella moellendorffii HOM05D003008 ORTHO05D003346 5.6e-20 101.7 160 38.1
Rhsim13G0124600 Rhododendron simsii HOM05D003008 ORTHO05D003346 9.5e-20 100.9 53 83.0
CBR_g16946 Chara braunii HOM05D003008 ORTHO05D003346 2.1e-19 99.8 160 38.8
CBR_g38556 Chara braunii HOM05D003008 ORTHO05D003346 2.1e-19 99.8 160 38.8
FAN21G3776 Fragaria x ananassa HOM05D003008 ORTHO05D003346 2.8e-19 99.4 151 41.7
Lj1C1159T8 Lonicera japonica HOM05D003008 ORTHO05D003346 2.8e-19 99.4 175 38.3
HPP92_005928 Vanilla planifolia HOM05D003008 ORTHO05D003346 2.8e-19 99.4 54 74.1
AagrBONN_evm.TU.Sc2ySwM_117.1205 Anthoceros agrestis HOM05D003008 ORTHO05D003346 3.6e-19 99.0 165 39.4
MBI02_g32311_MAGBIO Magnolia biondii HOM05D003008 ORTHO05D003346 3.6e-19 99.0 155 40.6
QL03p057306 Quercus lobata HOM05D003008 ORTHO05D003346 4.7e-19 98.6 54 77.8
SEGI_26502 Sequoiadendron giganteum HOM05D003008 ORTHO05D003346 4.7e-19 98.6 151 40.4
Mapoly0003s0305 Marchantia polymorpha HOM05D003008 ORTHO05D003346 8.0e-19 97.8 160 38.1
Aqoxy7G01281 Aquilegia oxysepala HOM05D003008 ORTHO05D003346 1.0e-18 97.4 59 71.2
HPP92_013208 Vanilla planifolia HOM05D003008 ORTHO05D003346 1.4e-18 97.1 54 72.2
PRCOL_00000580 Prasinoderma coloniale HOM05D003008 ORTHO05D003346 2.0e-17 93.2 156 35.9
MCO14G370 Micromonas commoda HOM05D003008 ORTHO05D003346 1.3e-16 90.5 156 36.5
Cre12.g514950 Chlamydomonas reinhardtii HOM05D003008 ORTHO05D003346 1.6e-14 83.6 109 43.1
Oeu058493.2 Olea europaea HOM05D003008 ORTHO05D003346 1.0e-13 80.9 45 82.2
SEGI_37953 Sequoiadendron giganteum HOM05D003008 ORTHO05D003346 8.6e-13 77.8 41 85.4
HanXRQChr04g0104351 Helianthus annuus HOM05D003008 ORTHO05D003346 2.8e-11 72.8 56 67.9
Cre12.g503150 Chlamydomonas reinhardtii HOM05D003008 ORTHO05D003346 5.8e-09 65.1 67 47.8
SMO236G0116 Selaginella moellendorffii HOM05D003008 ORTHO05D003346 1.4e-07 60.5 36 75.0


User provided reference genes

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