Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0564621 Helianthus annuus HOM05D004841 ORTHO05D005874 4.8e-191 671.0 339 100.0
Lsat_1_v5_gn_4_29561 Lactuca sativa HOM05D004841 ORTHO05D005874 7.0e-158 560.8 337 82.5
ECA234G4271 Erigeron canadensis HOM05D004841 ORTHO05D005874 1.2e-152 543.5 336 80.4
CSS0019612 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 1.4e-137 493.4 338 73.7
CSS0027900 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 1.4e-137 493.4 338 73.7
Hma1.2p1_0594F.1_g185890 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 2.4e-134 482.6 338 71.6
GSVIVG01034157001 Vitis vinifera HOM05D004841 ORTHO05D005874 1.6e-133 479.9 338 71.3
DCAR_027897 Daucus carota HOM05D004841 ORTHO05D005874 5.0e-132 474.9 333 70.9
Rhsim13G0116700 Rhododendron simsii HOM05D004841 ORTHO05D005874 3.3e-131 472.2 341 71.3
Lj2A321T65 Lonicera japonica HOM05D004841 ORTHO05D005874 1.4e-129 466.8 319 75.2
vmacro03353 Vaccinium macrocarpon HOM05D004841 ORTHO05D005874 8.9e-129 464.2 338 69.5
Migut.M00886 Erythranthe guttata HOM05D004841 ORTHO05D005874 5.8e-128 461.5 335 69.6
Manes.17G073300 Manihot esculenta HOM05D004841 ORTHO05D005874 6.4e-127 458.0 339 67.3
MSTRG.7507 Avicennia marina HOM05D004841 ORTHO05D005874 1.3e-124 450.3 321 70.7
Dinv21532 Davidia involucrata HOM05D004841 ORTHO05D005874 3.9e-124 448.7 338 69.5
CANSAT11G1247 Cannabis sativa HOM05D004841 ORTHO05D005874 5.0e-124 448.4 336 66.7
Nn3g20436 Nelumbo nucifera HOM05D004841 ORTHO05D005874 4.3e-123 445.3 321 69.2
Oeu013128.1 Olea europaea HOM05D004841 ORTHO05D005874 4.3e-123 445.3 335 66.3
TAR628G1076 Trochodendron aralioides HOM05D004841 ORTHO05D005874 9.5e-123 444.1 334 68.6
PGR031G1170 Punica granatum HOM05D004841 ORTHO05D005874 1.6e-122 443.4 344 65.7
Potri.012G107400 Populus trichocarpa HOM05D004841 ORTHO05D005874 2.8e-122 442.6 337 67.1
Prupe.4G084200 Prunus persica HOM05D004841 ORTHO05D005874 3.6e-122 442.2 340 65.9
Solyc02g078830.4 Solanum lycopersicum HOM05D004841 ORTHO05D005874 3.6e-122 442.2 339 66.4
Atru.chr10.1099 Acer truncatum HOM05D004841 ORTHO05D005874 4.7e-122 441.8 343 66.5
Nitab4.5_0000501g0020 Nicotiana tabacum HOM05D004841 ORTHO05D005874 4.7e-122 441.8 339 67.0
Sopen02g023650 Solanum pennellii HOM05D004841 ORTHO05D005874 4.7e-122 441.8 339 66.1
SGA_v2.0_scaffold146G36131 Striga asiatica HOM05D004841 ORTHO05D005874 4.7e-122 441.8 316 70.9
Cc02_g29720 Coffea canephora HOM05D004841 ORTHO05D005874 6.2e-122 441.4 335 66.9
Peaxi162Scf00465g00119 Petunia axillaris HOM05D004841 ORTHO05D005874 1.1e-121 440.7 339 66.4
Sed0021741 Sechium edule HOM05D004841 ORTHO05D005874 1.4e-121 440.3 336 66.4
PGSC0003DMG400022420 Solanum tuberosum HOM05D004841 ORTHO05D005874 1.4e-121 440.3 339 65.8
CiPaw.09G120900 Carya illinoinensis HOM05D004841 ORTHO05D005874 5.2e-121 438.3 340 67.1
Nitab4.5_0004020g0010 Nicotiana tabacum HOM05D004841 ORTHO05D005874 5.2e-121 438.3 339 66.1
Sabra13G0019700 Salix brachista HOM05D000092 ORTHO05D005874 6.8e-121 438.0 319 68.0
Actinidia01573 Actinidia chinensis HOM05D004841 ORTHO05D005874 4.4e-120 435.3 338 66.6
TWI63G0939 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 4.4e-120 435.3 340 63.8
QL05p055481 Quercus lobata HOM05D004841 ORTHO05D005874 1.7e-119 433.3 342 66.4
Sc02g0001540 Simmondsia chinensis HOM05D004841 ORTHO05D005874 2.2e-119 433.0 320 66.6
CiPaw.10G089600 Carya illinoinensis HOM05D004841 ORTHO05D005874 8.3e-119 431.0 338 64.8
Ciclev10015824m.g Citrus clementina HOM05D004841 ORTHO05D005874 8.3e-119 431.0 342 64.9
MBI02_g29870_MAGBIO Magnolia biondii HOM05D004841 ORTHO05D005874 1.1e-118 430.6 333 66.1
Eucgr.E02427 Eucalyptus grandis HOM05D004841 ORTHO05D005874 1.4e-118 430.3 335 65.4
TWI34G1122 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 1.4e-118 430.3 334 64.7
Cfa000914 Carpinus fangiana HOM05D004841 ORTHO05D005874 1.9e-118 429.9 337 65.9
FAN21G1690 Fragaria x ananassa HOM05D004841 ORTHO05D005874 1.2e-117 427.2 324 66.4
MD05G1280700 Malus domestica HOM05D004841 ORTHO05D005874 2.1e-117 426.4 339 63.1
FAN25G3271 Fragaria x ananassa HOM05D004841 ORTHO05D005874 3.5e-117 425.6 324 66.0
Duzib235G0160 Durio zibethinus HOM05D004841 ORTHO05D005874 4.6e-117 425.2 339 63.7
RcHm_v2.0_Chr5g0014571 Rosa chinensis HOM05D004841 ORTHO05D005874 1.3e-116 423.7 341 64.2
Medtr2g049300 Medicago truncatula HOM05D004841 ORTHO05D005874 1.7e-116 423.3 317 67.8
TPR.G29935 Trifolium pratense HOM05D004841 ORTHO05D005874 1.7e-116 423.3 334 65.3
Ah.08g211520 Amaranthus hybridus HOM05D004841 ORTHO05D005874 2.3e-116 422.9 337 65.3
Haze_05641 Corylus avellana HOM05D004841 ORTHO05D005874 2.3e-116 422.9 341 64.2
MELO3C007114.2 Cucumis melo HOM05D004841 ORTHO05D005874 6.6e-116 421.4 335 63.9
FAN16G1445 Fragaria x ananassa HOM05D004841 ORTHO05D005874 6.6e-116 421.4 324 66.0
EL10Ac7g16662 Beta vulgaris HOM05D004841 ORTHO05D005874 8.6e-116 421.0 339 64.6
FAN11G3214 Fragaria x ananassa HOM05D004841 ORTHO05D005874 8.6e-116 421.0 324 65.7
Gohir.A10G042800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 8.6e-116 421.0 339 63.7
Gohir.D10G043800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 8.6e-116 421.0 339 63.4
Gorai.011G046600 Gossypium raimondii HOM05D004841 ORTHO05D005874 1.1e-115 420.6 337 63.5
FvH4_3g05180 Fragaria vesca HOM05D004841 ORTHO05D005874 2.5e-115 419.5 324 65.4
Ca_03447_v3 Cicer arietinum L. HOM05D004841 ORTHO05D005874 3.3e-115 419.1 331 65.0
FAN16G2733 Fragaria x ananassa HOM05D004841 ORTHO05D005874 5.6e-115 418.3 324 65.4
arahy.Tifrunner.gnm1.ann1.0DR3QG Arachis hypogaea HOM05D004841 ORTHO05D005874 1.2e-114 417.2 334 64.1
CsaV3_6G051930 Cucumis sativus L. HOM05D004841 ORTHO05D005874 2.1e-114 416.4 335 63.0
MD10G1259100 Malus domestica HOM05D004841 ORTHO05D005874 2.1e-114 416.4 339 62.2
Thecc.06G146500 Theobroma cacao HOM05D004841 ORTHO05D005874 3.6e-114 415.6 339 62.5
Psat1g020080 Pisum sativum HOM05D004841 ORTHO05D005874 4.7e-114 415.2 333 64.6
Dinv32222 Davidia involucrata HOM05D004841 ORTHO05D005874 1.4e-113 413.7 263 77.2
arahy.Tifrunner.gnm1.ann1.4L8DWS Arachis hypogaea HOM05D004841 ORTHO05D005874 2.3e-113 412.9 339 64.0
COL.COLO4_31030 Corchorus olitorius HOM05D004841 ORTHO05D005874 2.3e-113 412.9 339 61.7
arahy.Tifrunner.gnm1.ann1.9IA9LY Arachis hypogaea HOM05D004841 ORTHO05D005874 3.1e-113 412.5 318 65.7
Lalb_Chr11g0073321 Lupinus albus HOM05D004841 ORTHO05D005874 2.0e-112 409.8 341 63.9
THA.LOC104821761 Tarenaya hassleriana HOM05D004841 ORTHO05D005874 2.0e-112 409.8 344 61.6
arahy.Tifrunner.gnm1.ann1.V1DCF9 Arachis hypogaea HOM05D004841 ORTHO05D005874 5.8e-112 408.3 318 65.7
PSO541G1633 Papaver somniferum HOM05D004841 ORTHO05D005874 1.9e-110 403.3 331 61.6
PSO675G7289 Papaver somniferum HOM05D004841 ORTHO05D005874 1.9e-110 403.3 331 61.6
Hund20587 Selenicereus undatus HOM05D004841 ORTHO05D005874 8.6e-108 394.4 347 59.4
Aa31LG2G2230 Aethionema arabicum HOM05D004841 ORTHO05D005874 1.1e-107 394.0 327 60.9
AT1G65030 Arabidopsis thaliana HOM05D004841 ORTHO05D005874 1.5e-107 393.7 341 59.8
HPP92_012189 Vanilla planifolia HOM05D004841 ORTHO05D005874 1.5e-107 393.7 316 59.8
C06p42730 Brassica napus HOM05D004841 ORTHO05D005874 1.9e-107 393.3 340 59.4
BraA07t31032Z Brassica rapa HOM05D004841 ORTHO05D005874 1.9e-107 393.3 341 59.8
A07p34060 Brassica napus HOM05D004841 ORTHO05D005874 2.5e-107 392.9 341 59.8
Lj6g0003285 Lotus japonicus HOM05D004841 ORTHO05D005874 2.5e-107 392.9 338 60.1
BraA02t06489Z Brassica rapa HOM05D004841 ORTHO05D005874 4.3e-107 392.1 342 59.1
C02p23090 Brassica napus HOM05D004841 ORTHO05D005874 7.3e-107 391.3 339 59.6
Thhalv10018816m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 9.5e-107 391.0 340 59.7
AL2G19660 Arabidopsis lyrata HOM05D004841 ORTHO05D005874 1.2e-106 390.6 346 59.5
Carub.0002s1024 Capsella rubella HOM05D004841 ORTHO05D005874 1.2e-106 390.6 346 59.8
Sp5g22530 Schrenkiella parvula HOM05D004841 ORTHO05D005874 1.2e-106 390.6 339 59.6
A02p14280 Brassica napus HOM05D004841 ORTHO05D005874 1.6e-106 390.2 342 59.1
Aqoxy5G03944 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 2.1e-106 389.8 335 59.4
BolC2t08451H Brassica oleracea HOM05D004841 ORTHO05D005874 2.1e-106 389.8 339 59.3
PSO017G5522 Papaver somniferum HOM05D004841 ORTHO05D005874 2.1e-106 389.8 323 60.7
Glyma.15G195000 Glycine max HOM05D004841 ORTHO05D005874 4.7e-106 388.7 332 59.6
BcaB03g15189 Brassica carinata HOM05D004841 ORTHO05D005874 8.1e-106 387.9 340 58.8
BcaB05g24290 Brassica carinata HOM05D004841 ORTHO05D005874 8.1e-106 387.9 340 58.2
CARHR056500 Cardamine hirsuta HOM05D004841 ORTHO05D005874 1.1e-105 387.5 344 59.0
C06p42780 Brassica napus HOM05D004841 ORTHO05D005874 2.4e-105 386.3 340 58.5
Aqoxy7G03441 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 3.1e-105 386.0 318 61.3
ClCG01G024810 Citrullus lanatus HOM05D004841 ORTHO05D005874 1.5e-104 383.6 335 60.0
Glyma.09G086200 Glycine max HOM05D004841 ORTHO05D005874 9.9e-104 380.9 318 60.7
Phvul.009G215400 Phaseolus vulgaris HOM05D004841 ORTHO05D005874 1.7e-103 380.2 340 57.1
BolC6t39162H Brassica oleracea HOM05D004841 ORTHO05D005874 3.8e-103 379.0 369 55.0
VMungo1309G2918 Vigna mungo HOM05D004841 ORTHO05D005874 6.0e-101 371.7 330 57.9
SalBow8G2637 Salvia bowleyana HOM05D004841 ORTHO05D005874 4.3e-99 365.5 321 60.1
BcaNung05075 Brassica carinata HOM05D004841 ORTHO05D005874 1.4e-97 360.5 340 56.5
SHI02861 Sapria himalayana HOM05D004841 ORTHO05D005874 2.9e-95 352.8 286 60.1
AUR62026924 Chenopodium quinoa HOM05D004841 ORTHO05D005874 4.9e-95 352.1 254 69.3
ATR0772G214 Amborella trichopoda HOM05D004841 ORTHO05D005874 1.9e-86 323.6 322 48.1
SEGI_08519 Sequoiadendron giganteum HOM05D004841 ORTHO05D005874 1.6e-82 310.5 352 46.3
Zm00001eb328580 Zea mays HOM05D004841 ORTHO05D005874 4.8e-82 308.9 330 49.4
Mapoly0001s0498 Marchantia polymorpha HOM05D004841 ORTHO05D005874 1.3e-66 257.7 350 40.3
CDE07G1158 Ceratophyllum demersum HOM05D004841 ORTHO05D005874 2.9e-63 246.5 225 56.0
Os12g0615900 Oryza sativa ssp. japonica HOM05D004841 ORTHO05D005874 1.6e-61 240.7 253 52.6
AUR62042056 Chenopodium quinoa HOM05D004841 ORTHO05D005874 8.8e-60 235.0 170 68.8
SMO358G0291 Selaginella moellendorffii HOM05D004841 ORTHO05D005874 5.9e-56 222.2 317 40.7
unitig_749.g13802 Utricularia gibba HOM05D004841 ORTHO05D005874 7.2e-54 215.3 159 68.6
BcaNung05072 Brassica carinata HOM05D004841 ORTHO05D005874 5.7e-51 205.7 184 56.0
BcaNung05071 Brassica carinata HOM05D004841 ORTHO05D005874 9.7e-51 204.9 184 56.0
Sabra13G0018400 Salix brachista HOM05D004841 ORTHO05D004358 5.3e-49 199.1 144 68.1
Cpa.g.sc17.34 Carica papaya HOM05D004841 ORTHO05D005874 1.1e-43 181.4 135 67.4
Cre03.g205800 Chlamydomonas reinhardtii HOM05D004841 ORTHO05D005874 2.2e-42 177.2 324 33.0
Oeu062572.1 Olea europaea HOM05D004841 ORTHO05D005874 9.1e-41 171.8 142 60.6
Hma1.2p1_0594F.1_g185900 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 9.4e-38 161.8 99 77.8
Sabra13G0018300 Salix brachista HOM05D004841 ORTHO05D005874 5.2e-36 156.0 126 64.3
Sabra13G0014000 Salix brachista HOM05D000092 ORTHO05D000042 8.8e-36 155.2 96 77.1
Sabra13G0015400 Salix brachista HOM05D004841 ORTHO05D005874 1.2e-35 154.8 116 66.4
Sabra13G0014300 Salix brachista HOM05D004841 ORTHO05D005874 5.7e-35 152.5 96 75.0
Sabra13G0014700 Salix brachista HOM05D000070 ORTHO05D000047 5.7e-35 152.5 96 75.0
Pp3c9_24890 Physcomitrium patens HOM05D004841 ORTHO05D005874 1.4e-33 147.9 208 41.8
CBR_g4467 Chara braunii HOM05D004841 ORTHO05D005874 2.9e-31 140.2 285 31.6
unitig_749.g13803 Utricularia gibba HOM05D004841 ORTHO05D005874 5.0e-31 139.4 114 57.9
C06p41890 Brassica napus HOM05D004841 ORTHO05D005874 6.5e-31 139.0 116 59.5
Pp3c15_25070 Physcomitrium patens HOM05D004841 ORTHO05D005874 1.5e-30 137.9 169 43.2
BolC6t39240H Brassica oleracea HOM05D004841 ORTHO05D005874 5.5e-30 136.0 116 58.6
MCO15G572 Micromonas commoda HOM05D004841 ORTHO05D005874 6.1e-29 132.5 341 29.0
ATR1098G095 Amborella trichopoda HOM05D004841 ORTHO05D005874 5.2e-28 129.4 164 39.6
Sabra13G0015100 Salix brachista HOM05D004841 ORTHO05D005874 1.5e-27 127.9 92 67.4
Sabra13G0019300 Salix brachista HOM05D004841 ORTHO05D005874 1.5e-27 127.9 92 67.4
Cpa.g.c47956 Carica papaya HOM05D004841 ORTHO05D005874 2.0e-27 127.5 98 58.2
AagrBONN_evm.TU.Sc2ySwM_117.2336 Anthoceros agrestis HOM05D004841 ORTHO05D005874 3.4e-27 126.7 156 45.5
Oeu030952.1 Olea europaea HOM05D004841 ORTHO05D005874 5.7e-27 125.9 182 43.4
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 5.2e-20 102.8 128 46.9
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 7.5e-19 99.0 179 38.5
Thhalv10019798m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 1.8e-17 94.4 160 38.8
VMungo0331G1481 Vigna mungo HOM05D004841 ORTHO05D005874 2.0e-16 90.9 111 43.2
Oeu030951.1 Olea europaea HOM05D004841 ORTHO05D005874 1.6e-13 81.3 124 44.4
VMungo1382G0002 Vigna mungo HOM05D004841 ORTHO05D005874 1.4e-12 78.2 100 41.0
Sabra13G0018600 Salix brachista HOM05D004841 ORTHO05D005874 8.9e-12 75.5 42 83.3
BcaC03g14843 Brassica carinata HOM05D004841 ORTHO05D005874 7.5e-11 72.4 58 67.2
VMungo0712G0001 Vigna mungo HOM05D004841 ORTHO05D005874 1.4e-09 68.2 126 41.3
Actinidia16778 Actinidia chinensis HOM05D004841 ORTHO05D005874 3.2e-09 67.0 52 59.6
MBI05_g03452_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 1.5e-06 58.2 222 27.9
Solyc12g009030.2 Solanum lycopersicum HOM05D005151 ORTHO05D006322 2.5e-06 57.4 108 36.1


User provided reference genes

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