Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0563071 Helianthus annuus HOM05D005291 ORTHO05D006556 3.9e-120 434.9 228 100.0
HanXRQChr12g0368521 Helianthus annuus HOM05D005291 ORTHO05D006556 3.8e-107 391.7 233 90.6
Lsat_1_v5_gn_6_37081 Lactuca sativa HOM05D005291 ORTHO05D006556 3.4e-100 368.6 230 85.7
ECA234G0485 Erigeron canadensis HOM05D005291 ORTHO05D006556 2.7e-97 359.0 215 88.8
Lj1A1140T41 Lonicera japonica HOM05D005291 ORTHO05D006556 2.4e-93 345.9 230 80.0
Dinv01911 Davidia involucrata HOM05D005291 ORTHO05D006556 5.8e-92 341.3 235 79.1
PGSC0003DMG400021144 Solanum tuberosum HOM05D005291 ORTHO05D006556 2.2e-91 339.3 233 78.1
Oeu008978.1 Olea europaea HOM05D005291 ORTHO05D006556 4.9e-91 338.2 234 76.1
SGA_v2.0_scaffold298G47643 Striga asiatica HOM05D005291 ORTHO05D006556 6.4e-91 337.8 230 77.4
CAN.G675.17 Capsicum annuum HOM05D005291 ORTHO05D006556 1.9e-90 336.3 233 78.5
Medtr2g029370 Medicago truncatula HOM05D005291 ORTHO05D006556 1.9e-90 336.3 230 78.7
Cc09_g06610 Coffea canephora HOM05D005291 ORTHO05D006556 2.5e-90 335.9 235 77.4
MSTRG.7576 Avicennia marina HOM05D005291 ORTHO05D006556 5.5e-90 334.7 234 74.8
Rhsim13G0127200 Rhododendron simsii HOM05D005291 ORTHO05D006556 7.1e-90 334.3 229 78.2
Sopen02g018600 Solanum pennellii HOM05D005291 ORTHO05D006556 9.3e-90 334.0 233 76.4
Hma1.2p1_0326F.1_g126220 Hydrangea macrophylla HOM05D005291 ORTHO05D006556 1.2e-89 333.6 229 79.0
Sopen02g018590 Solanum pennellii HOM05D005291 ORTHO05D006556 1.2e-89 333.6 233 76.4
CAN.G675.15 Capsicum annuum HOM05D005291 ORTHO05D006556 2.7e-89 332.4 233 77.7
Solyc02g069450.3 Solanum lycopersicum HOM05D005291 ORTHO05D006556 4.6e-89 331.6 233 75.5
Solyc02g069460.3 Solanum lycopersicum HOM05D005291 ORTHO05D006556 4.6e-89 331.6 233 76.0
unitig_92.g28186 Utricularia gibba HOM05D005291 ORTHO05D006556 1.0e-88 330.5 233 76.0
Migut.M01951 Erythranthe guttata HOM05D005291 ORTHO05D006556 3.0e-88 328.9 230 75.7
Eucgr.K00389 Eucalyptus grandis HOM05D005291 ORTHO05D006556 3.0e-88 328.9 233 76.4
QL05p062860 Quercus lobata HOM05D005291 ORTHO05D006556 3.0e-88 328.9 226 77.9
MSTRG.16324 Avicennia marina HOM05D005291 ORTHO05D006556 8.7e-88 327.4 234 74.4
Lj6g0012734 Lotus japonicus HOM05D005291 ORTHO05D006556 8.7e-88 327.4 235 75.7
Peaxi162Scf00267g01017 Petunia axillaris HOM05D005291 ORTHO05D006556 8.7e-88 327.4 231 75.3
SGA_v2.0_scaffold223G42900 Striga asiatica HOM05D005291 ORTHO05D006556 1.1e-87 327.0 233 76.0
arahy.Tifrunner.gnm1.ann1.PX7M3V Arachis hypogaea HOM05D005291 ORTHO05D006556 1.9e-87 326.2 237 74.7
Actinidia33638 Actinidia chinensis HOM05D005291 ORTHO05D006556 9.6e-87 323.9 228 76.8
Sed0028144 Sechium edule HOM05D005291 ORTHO05D006556 9.6e-87 323.9 229 77.3
vmacro03483 Vaccinium macrocarpon HOM05D005291 ORTHO05D006556 9.6e-87 323.9 231 74.5
Ah.01g008620 Amaranthus hybridus HOM05D005291 ORTHO05D006556 1.3e-86 323.6 232 76.3
Atru.chr10.620 Acer truncatum HOM05D005291 ORTHO05D006556 1.6e-86 323.2 224 79.9
Aqoxy1G01510 Aquilegia oxysepala HOM05D005291 ORTHO05D006556 3.7e-86 322.0 231 76.2
Sed0015115 Sechium edule HOM05D005291 ORTHO05D006556 3.7e-86 322.0 229 76.9
TPR.G26533 Trifolium pratense HOM05D005291 ORTHO05D006556 3.7e-86 322.0 191 86.9
VMungo1215G2240 Vigna mungo HOM05D005291 ORTHO05D006556 4.8e-86 321.6 233 76.0
AUR62013057 Chenopodium quinoa HOM05D005291 ORTHO05D006556 6.2e-86 321.2 235 74.9
Sc10g0008690 Simmondsia chinensis HOM05D005291 ORTHO05D006556 6.2e-86 321.2 202 82.2
Haze_21121 Corylus avellana HOM05D005291 ORTHO05D006556 1.1e-85 320.5 233 74.2
Manes.16G056000 Manihot esculenta HOM05D005291 ORTHO05D006556 1.1e-85 320.5 227 77.5
Phvul.L001631 Phaseolus vulgaris HOM05D005291 ORTHO05D006556 1.1e-85 320.5 232 75.4
Psat1g169240 Pisum sativum HOM05D005291 ORTHO05D006556 1.1e-85 320.5 182 89.0
Cpa.g.sc882.3 Carica papaya HOM05D005291 ORTHO05D006556 1.4e-85 320.1 226 77.4
CDE05G2870 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 1.4e-85 320.1 228 75.4
Haze_21115 Corylus avellana HOM05D005291 ORTHO05D006556 1.4e-85 320.1 230 74.8
TWI09G0987 Tripterygium wilfordii HOM05D005291 ORTHO05D006556 1.4e-85 320.1 232 75.0
AUR62010064 Chenopodium quinoa HOM05D005291 ORTHO05D006556 1.8e-85 319.7 235 75.3
Nn7g37951 Nelumbo nucifera HOM05D005291 ORTHO05D006556 1.8e-85 319.7 228 75.9
arahy.Tifrunner.gnm1.ann1.VHAI7W Arachis hypogaea HOM05D005291 ORTHO05D006556 2.4e-85 319.3 226 76.5
EL10Ac9g21406 Beta vulgaris HOM05D005291 ORTHO05D006556 2.4e-85 319.3 233 75.1
COL.COLO4_30928 Corchorus olitorius HOM05D005291 ORTHO05D006556 2.4e-85 319.3 227 76.2
Ah.01g022810 Amaranthus hybridus HOM05D005291 ORTHO05D006556 3.1e-85 318.9 235 75.7
Ciclev10016540m.g Citrus clementina HOM05D005291 ORTHO05D006556 3.1e-85 318.9 230 76.1
FAN21G3936 Fragaria x ananassa HOM05D005291 ORTHO05D006556 3.1e-85 318.9 228 73.7
FAN25G3276 Fragaria x ananassa HOM05D005291 ORTHO05D006556 3.1e-85 318.9 228 73.7
TAR626G0502 Trochodendron aralioides HOM05D005291 ORTHO05D006556 3.1e-85 318.9 224 76.8
MD05G1259200 Malus domestica HOM05D005291 ORTHO05D006556 4.0e-85 318.5 234 75.2
Duzib160G0628 Durio zibethinus HOM05D005291 ORTHO05D006556 5.3e-85 318.2 223 74.4
MD10G1238800 Malus domestica HOM05D005291 ORTHO05D006556 5.3e-85 318.2 234 74.4
Lalb_Chr18g0057801 Lupinus albus HOM05D005291 ORTHO05D006556 6.9e-85 317.8 239 73.2
RcHm_v2.0_Chr5g0019221 Rosa chinensis HOM05D005291 ORTHO05D006556 9.0e-85 317.4 228 73.7
TWI73G1099 Tripterygium wilfordii HOM05D005291 ORTHO05D006556 9.0e-85 317.4 228 74.1
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 1.5e-84 316.6 236 74.2
FvH4_3g11800 Fragaria vesca HOM05D005291 ORTHO05D006556 2.0e-84 316.2 228 73.2
CDE12G0048 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 2.6e-84 315.8 229 75.1
PSO170G0936 Papaver somniferum HOM05D005291 ORTHO05D006556 2.6e-84 315.8 227 75.3
CANSAT35G1185 Cannabis sativa HOM05D005291 ORTHO05D006556 4.5e-84 315.1 234 73.1
CiPaw.09G150600 Carya illinoinensis HOM05D005291 ORTHO05D006556 4.5e-84 315.1 233 72.5
MELO3C021788.2 Cucumis melo HOM05D005291 ORTHO05D006556 4.5e-84 315.1 231 75.8
Sabra01G0058700 Salix brachista HOM05D005291 ORTHO05D006556 4.5e-84 315.1 230 76.1
PSO017G5348 Papaver somniferum HOM05D005291 ORTHO05D006556 7.6e-84 314.3 228 74.1
CiPaw.10G112100 Carya illinoinensis HOM05D005291 ORTHO05D006556 1.3e-83 313.5 234 73.1
Thecc.06G135600 Theobroma cacao HOM05D005291 ORTHO05D006556 1.7e-83 313.2 233 74.2
CDE01G0253 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 2.2e-83 312.8 229 74.2
Ca_00782_v3 Cicer arietinum L. HOM05D005291 ORTHO05D006556 3.8e-83 312.0 171 90.1
Ca_31080_v3 Cicer arietinum L. HOM05D005291 ORTHO05D006556 3.8e-83 312.0 171 90.1
Duzib235G0861 Durio zibethinus HOM05D005291 ORTHO05D006556 3.8e-83 312.0 229 75.5
Potri.001G081500 Populus trichocarpa HOM05D005291 ORTHO05D006556 3.8e-83 312.0 230 76.1
CsaV3_1G046680 Cucumis sativus L. HOM05D005291 ORTHO05D006556 4.9e-83 311.6 228 75.0
Gohir.A05G143600 Gossypium hirsutum HOM05D005291 ORTHO05D006556 4.9e-83 311.6 225 74.7
Prupe.4G105600 Prunus persica HOM05D005291 ORTHO05D006556 4.9e-83 311.6 234 73.5
THA.LOC104814370 Tarenaya hassleriana HOM05D005291 ORTHO05D006556 1.1e-82 310.5 229 74.7
CARHR030790 Cardamine hirsuta HOM05D005291 ORTHO05D006556 2.5e-82 309.3 228 74.1
Gohir.A06G138900 Gossypium hirsutum HOM05D005291 ORTHO05D006556 2.5e-82 309.3 227 74.9
CDE02G3915 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 4.2e-82 308.5 209 77.0
Gohir.D05G145900 Gossypium hirsutum HOM05D005291 ORTHO05D006556 7.1e-82 307.8 224 73.7
Gorai.009G149800 Gossypium raimondii HOM05D005291 ORTHO05D006556 7.1e-82 307.8 224 73.7
Gorai.010G170600 Gossypium raimondii HOM05D005291 ORTHO05D006556 7.1e-82 307.8 225 73.8
AL1G49710 Arabidopsis lyrata HOM05D005291 ORTHO05D006556 1.2e-81 307.0 230 73.5
BcaB04g18162 Brassica carinata HOM05D005291 ORTHO05D006556 1.2e-81 307.0 231 73.6
AT1G31330 Arabidopsis thaliana HOM05D005291 ORTHO05D006556 2.1e-81 306.2 228 72.8
BraA08t33062Z Brassica rapa HOM05D005291 ORTHO05D006556 2.1e-81 306.2 228 73.7
Gohir.D06G146300 Gossypium hirsutum HOM05D005291 ORTHO05D006556 2.1e-81 306.2 225 73.3
A08p10630 Brassica napus HOM05D005291 ORTHO05D006556 2.7e-81 305.8 228 73.2
BcaC07g37765 Brassica carinata HOM05D005291 ORTHO05D006556 3.5e-81 305.4 228 72.4
BolC8t48151H Brassica oleracea HOM05D005291 ORTHO05D006556 3.5e-81 305.4 228 72.4
Actinidia29307 Actinidia chinensis HOM05D005291 ORTHO05D006556 4.6e-81 305.1 158 92.4
A07p09430 Brassica napus HOM05D005291 ORTHO05D006556 1.0e-80 303.9 228 71.9
BraA07t28739Z Brassica rapa HOM05D005291 ORTHO05D006556 1.0e-80 303.9 228 71.9
BcaB07g32794 Brassica carinata HOM05D005291 ORTHO05D006556 1.3e-80 303.5 231 72.3
BcaC05g27163 Brassica carinata HOM05D005291 ORTHO05D006556 1.8e-80 303.1 230 72.6
A09p34920 Brassica napus HOM05D005291 ORTHO05D006556 1.8e-80 303.1 230 72.6
BolC5t31789H Brassica oleracea HOM05D005291 ORTHO05D006556 1.8e-80 303.1 230 72.6
BraA09t39022Z Brassica rapa HOM05D005291 ORTHO05D006556 1.8e-80 303.1 230 72.6
Thhalv10008731m.g Eutrema salsugineum HOM05D005291 ORTHO05D006556 2.3e-80 302.8 230 72.6
Glyma.05G022900 Glycine max HOM05D005291 ORTHO05D006556 2.3e-80 302.8 228 72.4
Carub.0001s2977 Capsella rubella HOM05D005291 ORTHO05D006556 3.9e-80 302.0 230 72.2
C05p30540 Brassica napus HOM05D005291 ORTHO05D006556 5.1e-80 301.6 230 72.2
BolC7t41950H Brassica oleracea HOM05D005291 ORTHO05D006556 5.7e-79 298.1 228 70.2
Sp1g27160 Schrenkiella parvula HOM05D005291 ORTHO05D006556 5.7e-79 298.1 225 72.4
C07p14510 Brassica napus HOM05D005291 ORTHO05D006556 7.4e-79 297.7 181 82.3
Aa31LG9G15960 Aethionema arabicum HOM05D005291 ORTHO05D006556 1.6e-78 296.6 224 72.3
Cfa000743 Carpinus fangiana HOM05D005291 ORTHO05D006556 3.7e-78 295.4 156 91.0
HPP92_017743 Vanilla planifolia HOM05D005291 ORTHO05D006556 4.8e-78 295.0 213 73.7
ATR0763G286 Amborella trichopoda HOM05D005291 ORTHO05D006556 2.6e-76 289.3 183 78.1
ClCG01G009000 Citrullus lanatus HOM05D005291 ORTHO05D006556 3.3e-71 272.3 203 74.9
Zm00001eb213670 Zea mays HOM05D005291 ORTHO05D006556 9.7e-71 270.8 211 67.3
Os03g0778100 Oryza sativa ssp. japonica HOM05D005291 ORTHO05D006556 6.9e-69 264.6 221 65.2
Oeu008714.1 Olea europaea HOM05D005291 ORTHO05D006556 7.7e-68 261.2 234 63.2
Nitab4.5_0008761g0030 Nicotiana tabacum HOM05D005291 ORTHO05D006556 2.5e-66 256.1 230 63.9
Pp3c21_8800 Physcomitrium patens HOM05D005291 ORTHO05D006556 2.1e-65 253.1 234 59.0
Pp3c22_10850 Physcomitrium patens HOM05D005291 ORTHO05D006556 2.7e-65 252.7 200 64.0
Pp3c18_10730 Physcomitrium patens HOM05D005291 ORTHO05D006556 2.6e-63 246.1 234 56.4
Pp3c11_18230 Physcomitrium patens HOM05D005291 ORTHO05D006556 3.3e-63 245.7 211 59.7
Nitab4.5_0001312g0020 Nicotiana tabacum HOM05D005291 ORTHO05D006556 5.7e-63 245.0 226 61.1
Mapoly0075s0057 Marchantia polymorpha HOM05D005291 ORTHO05D006556 9.7e-63 244.2 218 60.6
SMO367G0762 Selaginella moellendorffii HOM05D005291 ORTHO05D006556 6.3e-62 241.5 175 66.9
CBR_g568 Chara braunii HOM05D005291 ORTHO05D006556 6.5e-59 231.5 232 55.2
AagrBONN_evm.TU.Sc2ySwM_344.4326 Anthoceros agrestis HOM05D005291 ORTHO05D006556 7.4e-55 218.0 220 54.5
Potri.003G148900 Populus trichocarpa HOM05D005291 ORTHO05D006556 8.0e-49 198.0 138 80.4
MCO07G173 Micromonas commoda HOM05D005291 ORTHO05D006556 2.4e-45 186.4 228 45.6
Cre09.g412100 Chlamydomonas reinhardtii HOM05D005291 ORTHO05D006556 3.1e-45 186.0 212 49.5
PRCOL_00005797 Prasinoderma coloniale HOM05D005291 ORTHO05D006556 1.4e-37 160.6 175 49.7
CDE12G0451 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 5.4e-37 158.7 155 63.9
Lalb_Chr20g0119941 Lupinus albus HOM05D005291 ORTHO05D006556 4.0e-32 142.5 72 83.3
Solyc08g074307.2 Solanum lycopersicum HOM05D005291 ORTHO05D006556 4.7e-25 119.0 131 64.1
BcaC03g16812 Brassica carinata HOM05D005291 ORTHO05D006556 6.4e-22 108.6 57 84.2
Nitab4.5_0001219g0180 Nicotiana tabacum HOM05D005291 ORTHO05D006556 1.2e-20 104.4 131 56.5
arahy.Tifrunner.gnm1.ann1.7UV7DW Arachis hypogaea HOM05D005291 ORTHO05D083431 3.5e-20 102.8 142 48.6
HanXRQChr16g0517321 Helianthus annuus HOM05D005291 ORTHO05D006556 1.3e-11 74.3 44 90.9
Nitab4.5_0005250g0030 Nicotiana tabacum HOM05D005291 ORTHO05D006556 1.9e-10 70.5 113 50.4


User provided reference genes

Program Settings