Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0560661 Helianthus annuus HOM05D002267 ORTHO05D027489 2.1e-73 278.9 134 100.0
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 6.8e-56 220.7 110 98.2
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 2.2e-51 205.7 103 96.1
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 2.2e-51 205.7 103 95.1
HanXRQChr03g0070911 Helianthus annuus HOM05D002267 ORTHO05D005902 2.5e-50 202.2 103 96.1
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 7.2e-50 200.7 103 93.2
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 1.6e-49 199.5 103 90.3
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 1.6e-49 199.5 103 90.3
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 2.1e-49 199.1 103 90.3
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 2.1e-49 199.1 103 91.3
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 2.1e-49 199.1 103 91.3
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 3.6e-49 198.4 103 90.3
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 4.7e-49 198.0 103 91.3
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 4.7e-49 198.0 103 89.3
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 8.0e-49 197.2 103 90.3
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 8.0e-49 197.2 103 90.3
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 8.0e-49 197.2 104 90.4
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 1.0e-48 196.8 103 88.3
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 1.0e-48 196.8 103 90.3
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 1.8e-48 196.1 103 89.3
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 1.8e-48 196.1 103 89.3
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 2.3e-48 195.7 103 87.4
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 3.0e-48 195.3 103 89.3
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 3.0e-48 195.3 103 88.3
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 4.0e-48 194.9 103 90.3
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 4.0e-48 194.9 103 86.4
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 5.2e-48 194.5 103 89.3
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 5.2e-48 194.5 103 90.3
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 5.2e-48 194.5 103 89.3
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 6.8e-48 194.1 103 87.4
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 8.8e-48 193.7 103 88.3
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 1.2e-47 193.4 101 88.1
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 1.2e-47 193.4 103 88.3
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 1.2e-47 193.4 103 88.3
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 1.2e-47 193.4 103 88.3
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 1.5e-47 193.0 103 88.3
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 1.5e-47 193.0 103 88.3
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 1.5e-47 193.0 103 87.4
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 1.5e-47 193.0 103 87.4
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 2.0e-47 192.6 103 88.3
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 2.0e-47 192.6 103 87.4
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 2.0e-47 192.6 103 87.4
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 3.4e-47 191.8 103 88.3
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 3.4e-47 191.8 103 88.3
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 3.4e-47 191.8 103 87.4
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 3.4e-47 191.8 103 87.4
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 4.4e-47 191.4 99 89.9
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 4.4e-47 191.4 103 86.4
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 5.7e-47 191.0 103 86.4
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 5.7e-47 191.0 103 86.4
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 7.5e-47 190.7 103 85.4
BcaB07g30056 Brassica carinata HOM05D002267 ORTHO05D027489 7.5e-47 190.7 97 91.8
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 7.5e-47 190.7 97 93.8
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 7.5e-47 190.7 97 93.8
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 7.5e-47 190.7 103 87.4
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 7.5e-47 190.7 97 92.8
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 9.8e-47 190.3 99 89.9
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 9.8e-47 190.3 103 87.4
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 9.8e-47 190.3 103 86.4
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 9.8e-47 190.3 103 87.4
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 1.3e-46 189.9 103 86.4
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 1.3e-46 189.9 99 88.9
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 1.3e-46 189.9 103 83.5
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 1.3e-46 189.9 103 86.4
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 1.7e-46 189.5 96 92.7
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 1.7e-46 189.5 103 85.4
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 1.7e-46 189.5 103 85.4
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 1.7e-46 189.5 103 85.4
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 1.7e-46 189.5 105 85.7
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 1.7e-46 189.5 103 86.4
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 2.2e-46 189.1 99 88.9
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 2.2e-46 189.1 96 91.7
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 2.2e-46 189.1 96 91.7
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 2.2e-46 189.1 96 91.7
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 2.2e-46 189.1 96 91.7
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 2.2e-46 189.1 99 88.9
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 2.2e-46 189.1 96 91.7
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 2.2e-46 189.1 99 88.9
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 2.2e-46 189.1 103 85.4
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 2.2e-46 189.1 103 85.4
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 2.2e-46 189.1 103 87.4
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 2.8e-46 188.7 103 84.5
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 3.7e-46 188.3 96 91.7
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 3.7e-46 188.3 103 84.5
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 3.7e-46 188.3 97 92.8
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 3.7e-46 188.3 103 85.4
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 4.9e-46 188.0 103 83.5
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 6.3e-46 187.6 103 86.4
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 8.3e-46 187.2 97 90.7
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 8.3e-46 187.2 97 91.8
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 8.3e-46 187.2 96 92.7
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 8.3e-46 187.2 96 92.7
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 1.1e-45 186.8 96 89.6
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 1.1e-45 186.8 103 83.5
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 1.8e-45 186.0 96 89.6
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 2.4e-45 185.7 103 85.4
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.4e-45 185.7 103 82.5
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 5.4e-45 184.5 96 89.6
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 7.0e-45 184.1 99 85.9
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 9.1e-45 183.7 103 81.6
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 9.1e-45 183.7 96 89.6
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.6e-44 183.0 96 90.6
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 1.6e-44 183.0 103 84.5
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 5.9e-44 181.0 103 81.6
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 2.9e-43 178.7 96 84.4
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 2.9e-43 178.7 99 81.8
MBI14_g30826_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D027489 3.8e-43 178.3 99 84.8
MBI14_g42567_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 5.0e-43 177.9 100 84.0
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 5.0e-43 177.9 103 80.6
MD09G1080600 Malus domestica HOM05D002267 ORTHO05D005902 8.6e-43 177.2 91 93.4
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.5e-42 176.4 99 83.8
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 1.6e-41 172.9 99 79.8
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.6e-41 172.9 93 87.1
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 3.6e-41 171.8 95 83.2
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 8.0e-41 170.6 96 79.2
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 1.0e-40 170.2 95 83.2
Zm00001eb410550 Zea mays HOM05D002267 ORTHO05D005902 4.0e-40 168.3 96 82.3
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 8.9e-40 167.2 96 77.1
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 8.9e-40 167.2 96 79.2
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 1.5e-39 166.4 96 81.2
AagrBONN_evm.TU.Sc2ySwM_228.1779 Anthoceros agrestis HOM05D002267 ORTHO05D005902 3.4e-39 165.2 96 76.0
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 7.0e-37 157.5 94 73.4
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 2.0e-36 156.0 98 77.6
FAN18G0049 Fragaria x ananassa HOM05D002267 ORTHO05D005902 8.6e-35 150.6 76 92.1
RcHm_v2.0_Chr5g0053071 Rosa chinensis HOM05D002267 ORTHO05D005902 3.9e-27 125.2 72 79.2
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 1.1e-26 123.6 114 56.1
Duzib177G0042 Durio zibethinus HOM05D002267 ORTHO05D005902 4.7e-25 118.2 77 76.6
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 2.2e-22 109.4 51 98.0
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 2.9e-22 109.0 51 96.1
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 1.4e-21 106.7 51 94.1
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 1.9e-21 106.3 51 96.1
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 5.4e-21 104.8 51 92.2
TAR374G1196 Trochodendron aralioides HOM05D002267 ORTHO05D005902 4.6e-20 101.7 57 82.5
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 3.6e-17 92.0 45 91.1
Psat0s4662g0040 Pisum sativum HOM05D002267 ORTHO05D005902 5.8e-15 84.7 60 65.0
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 1.2e-12 77.0 43 79.1
BcaB04g17555 Brassica carinata HOM05D002267 ORTHO05D092878 8.6e-11 70.9 51 66.7
Nn5g27547 Nelumbo nucifera HOM05D002267 ORTHO05D027489 3.1e-08 62.4 30 86.7


User provided reference genes

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