Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 0.0e+00 1110.5 554 100.0
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 6.9e-264 913.7 498 90.2
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 8.5e-254 880.2 479 90.2
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 9.4e-253 876.7 443 97.7
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 2.5e-245 852.0 494 84.0
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 5.5e-245 850.9 494 83.4
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 7.2e-245 850.5 494 83.4
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 3.6e-244 848.2 494 83.6
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 4.7e-244 847.8 495 82.4
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 1.0e-243 846.7 493 83.4
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 2.3e-243 845.5 496 82.7
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 8.8e-243 843.6 495 82.0
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 8.8e-243 843.6 493 82.6
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 1.5e-242 842.8 490 83.9
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 1.3e-241 839.7 493 82.6
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 1.3e-241 839.7 493 81.9
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 2.8e-241 838.6 495 82.2
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 2.8e-241 838.6 487 84.0
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 3.7e-241 838.2 492 83.3
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 4.8e-241 837.8 494 82.0
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 6.3e-241 837.4 494 82.6
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 1.4e-240 836.3 493 82.6
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 1.8e-240 835.9 486 83.3
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 2.4e-240 835.5 487 83.8
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 5.3e-240 834.3 495 82.0
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 5.3e-240 834.3 493 82.6
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 7.0e-240 833.9 487 83.2
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 1.2e-239 833.2 493 81.9
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 1.6e-239 832.8 493 81.9
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 2.6e-239 832.0 486 82.9
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 3.5e-239 831.6 487 83.0
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 5.9e-239 830.9 487 82.1
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 7.7e-239 830.5 496 81.5
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 7.7e-239 830.5 493 81.9
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 7.7e-239 830.5 493 81.7
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 7.7e-239 830.5 493 82.4
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 1.3e-238 829.7 493 81.9
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 1.3e-238 829.7 495 81.4
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 1.7e-238 829.3 496 80.6
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 2.2e-238 828.9 492 80.9
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 3.8e-238 828.2 493 81.9
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 5.0e-238 827.8 493 82.6
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 8.5e-238 827.0 493 81.5
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.1e-237 826.6 486 82.7
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 1.1e-237 826.6 534 77.2
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 3.2e-237 825.1 492 81.7
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 3.2e-237 825.1 494 81.4
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 1.2e-236 823.2 496 81.0
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.6e-236 821.6 493 80.9
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 4.7e-236 821.2 494 80.4
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 6.1e-236 820.8 495 81.0
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 8.0e-236 820.5 490 81.8
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 8.0e-236 820.5 493 81.9
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 2.3e-235 818.9 492 81.3
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 3.0e-235 818.5 493 80.1
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 4.0e-235 818.1 495 80.8
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 4.0e-235 818.1 493 81.3
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 4.0e-235 818.1 495 80.6
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 5.2e-235 817.8 493 80.3
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 6.7e-235 817.4 493 80.7
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 8.8e-235 817.0 500 80.4
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 8.8e-235 817.0 495 80.6
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 1.2e-234 816.6 493 80.1
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 1.5e-234 816.2 477 83.0
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 1.5e-234 816.2 494 80.6
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 1.5e-234 816.2 493 80.7
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 2.0e-234 815.8 494 79.8
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.6e-234 815.5 493 80.5
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 2.6e-234 815.5 495 80.4
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 4.4e-234 814.7 506 79.8
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 9.7e-234 813.5 508 79.1
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 9.7e-234 813.5 493 80.1
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 1.3e-233 813.1 504 79.8
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 1.7e-233 812.8 493 81.5
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 2.2e-233 812.4 493 80.7
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 2.8e-233 812.0 493 80.3
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 2.8e-233 812.0 499 80.2
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 3.7e-233 811.6 489 81.8
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 3.7e-233 811.6 491 81.7
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 4.8e-233 811.2 493 80.3
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 8.2e-233 810.4 492 80.9
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 8.2e-233 810.4 504 78.8
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 1.1e-232 810.1 490 81.2
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.1e-232 810.1 493 81.1
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 1.4e-232 809.7 488 81.1
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 1.4e-232 809.7 491 81.7
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 1.8e-232 809.3 494 80.8
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 5.3e-232 807.7 492 80.9
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 9.1e-232 807.0 494 80.0
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 9.1e-232 807.0 492 80.9
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 2.0e-231 805.8 490 80.2
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 2.0e-231 805.8 527 75.9
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 4.5e-231 804.7 491 80.2
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 1.3e-230 803.1 500 79.6
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 5.0e-230 801.2 491 80.4
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 5.5e-229 797.7 492 79.7
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 5.5e-229 797.7 493 79.1
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 1.6e-228 796.2 493 78.3
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 1.6e-228 796.2 499 79.0
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 2.0e-223 779.2 494 77.3
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 5.2e-219 764.6 484 77.1
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 9.8e-218 760.4 511 74.8
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 2.8e-217 758.8 447 81.4
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 9.2e-216 753.8 487 75.2
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 2.9e-214 748.8 487 75.2
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 1.6e-212 743.0 492 74.2
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 2.8e-212 742.3 441 81.6
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 8.3e-209 730.7 438 82.0
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 2.4e-208 729.2 444 80.6
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 4.3e-205 718.4 488 72.7
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 3.4e-202 708.8 439 79.0
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 1.6e-199 699.9 485 72.6
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 1.0e-198 697.2 441 78.2
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 9.5e-197 690.6 485 70.1
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 8.3e-193 677.6 389 85.1
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.5e-189 666.0 487 70.8
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.9e-184 649.8 471 71.1
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 9.2e-184 647.5 404 77.5
CSS0025473 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D005902 3.6e-180 635.6 383 81.2
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 4.0e-179 632.1 495 65.5
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 1.6e-175 620.2 510 63.1
Psat0s4662g0040 Pisum sativum HOM05D002267 ORTHO05D005902 2.3e-174 616.3 502 64.1
FAN05G0821 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.6e-172 610.1 383 78.6
RcHm_v2.0_Chr5g0053071 Rosa chinensis HOM05D002267 ORTHO05D005902 5.1e-166 588.6 391 75.7
Prupe.3G243300 Prunus persica HOM05D002267 ORTHO05D005902 4.8e-156 555.4 346 79.2
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 3.2e-152 542.7 461 64.4
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 7.9e-151 538.1 382 70.7
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 6.3e-148 528.5 534 51.9
FAN18G0049 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.3e-132 477.6 266 88.0
HanXRQChr03g0070911 Helianthus annuus HOM05D002267 ORTHO05D005902 1.7e-132 477.2 245 97.1
HanXRQChr03g0070931 Helianthus annuus HOM05D002267 ORTHO05D005902 1.7e-121 440.7 301 76.7
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 3.6e-119 433.0 469 50.3
Zm00001eb410550 Zea mays HOM05D002267 ORTHO05D005902 3.6e-111 406.4 238 81.9
MBI14_g42567_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.0e-106 390.6 478 49.0
FAN13G3322 Fragaria x ananassa HOM05D002267 ORTHO05D005902 4.5e-106 389.4 228 83.8
AagrBONN_evm.TU.Sc2ySwM_228.1779 Anthoceros agrestis HOM05D002267 ORTHO05D005902 5.5e-104 382.5 238 76.9
BcaC03g17613 Brassica carinata HOM05D002267 ORTHO05D005902 3.0e-102 376.7 255 71.8
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 1.2e-101 374.8 434 49.1
MD09G1080600 Malus domestica HOM05D002267 ORTHO05D005902 1.3e-97 361.3 303 67.0
HPP92_013297 Vanilla planifolia HOM05D002267 ORTHO05D005902 3.7e-92 343.2 237 70.9
FAN02G0256 Fragaria x ananassa HOM05D002267 ORTHO05D005902 4.6e-90 336.3 310 58.7
SHI33593 Sapria himalayana HOM05D002267 ORTHO05D005902 6.2e-87 325.9 236 67.8
Duzib177G0042 Durio zibethinus HOM05D002267 ORTHO05D005902 3.3e-80 303.5 248 66.5
TPR.G11470 Trifolium pratense HOM05D002267 ORTHO05D005902 2.2e-60 237.7 158 71.5
HanXRQChr17g0560661 Helianthus annuus HOM05D002267 ORTHO05D027489 8.1e-55 219.2 110 98.2
TAR374G1196 Trochodendron aralioides HOM05D002267 ORTHO05D005902 5.3e-54 216.5 260 49.2
BcaC06g30839 Brassica carinata HOM05D002267 ORTHO05D005902 4.5e-53 213.4 302 46.0
Oeu025125.1 Olea europaea HOM05D002267 ORTHO05D005902 5.8e-53 213.0 148 69.6
BcaB07g30056 Brassica carinata HOM05D002267 ORTHO05D027489 2.0e-45 188.0 96 91.7
CARHR060050 Cardamine hirsuta HOM05D002267 ORTHO05D005902 1.4e-43 181.8 149 61.1
MBI14_g30826_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D027489 9.3e-43 179.1 107 80.4
HPP92_013296 Vanilla planifolia HOM05D002267 ORTHO05D005902 1.0e-41 175.6 151 64.2
MD09G1080700 Malus domestica HOM05D002267 ORTHO05D005902 2.8e-39 167.5 109 72.5
Sed0003994 Sechium edule HOM05D002267 ORTHO05D007330 1.1e-35 155.6 193 48.2
MBI14_g13653_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D035901 1.0e-33 149.1 161 52.8
GSVIVG01036480001 Vitis vinifera HOM05D002267 ORTHO05D005902 6.3e-31 139.8 75 85.3
Duzib168G0178 Durio zibethinus HOM05D002267 ORTHO05D029252 5.9e-29 133.3 79 79.7
Glyma.20G047400 Glycine max HOM05D002267 ORTHO05D029252 6.7e-25 119.8 85 68.2
Glyma.04G110800 Glycine max HOM05D002267 ORTHO05D029252 3.9e-17 94.0 93 53.8
FAN18G1196 Fragaria x ananassa HOM05D002267 ORTHO05D035901 5.3e-14 83.6 70 57.1
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 1.2e-13 82.4 61 72.1
Glyma.U031218 Glycine max HOM05D002267 ORTHO05D029252 3.6e-10 70.9 36 86.1
BcaB04g17555 Brassica carinata HOM05D002267 ORTHO05D092878 6.1e-10 70.1 51 66.7
RcHm_v2.0_Chr5g0053081 Rosa chinensis HOM05D002267 ORTHO05D035901 4.4e-08 63.9 48 62.5
Nn5g27547 Nelumbo nucifera HOM05D002267 ORTHO05D027489 1.3e-07 62.4 30 86.7
MELO3C034926.2 Cucumis melo HOM05D002267 ORTHO05D001928 3.1e-06 57.8 38 73.7


User provided reference genes

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