Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0556701 Helianthus annuus HOM05D003481 ORTHO05D004001 1.4e-87 326.2 164 100.0
HanXRQChr04g0119881 Helianthus annuus HOM05D003481 ORTHO05D004001 7.3e-28 127.9 73 89.0
HanXRQChr06g0183401 Helianthus annuus HOM05D003481 ORTHO05D004001 3.6e-19 99.0 75 74.7
ECA236G0663 Erigeron canadensis HOM05D003481 ORTHO05D004001 4.7e-19 98.6 73 72.6
Lsat_1_v5_gn_7_35621 Lactuca sativa HOM05D003481 ORTHO05D004001 2.6e-17 92.8 70 71.4
Dinv03119 Davidia involucrata HOM05D003481 ORTHO05D004001 1.6e-11 73.6 74 56.8
RcHm_v2.0_Chr3g0448451 Rosa chinensis HOM05D003481 ORTHO05D004001 2.1e-11 73.2 70 60.0
Hma1.2p1_0410F.1_g147020 Hydrangea macrophylla HOM05D003481 ORTHO05D004001 4.7e-11 72.0 72 55.6
TAR626G0933 Trochodendron aralioides HOM05D003481 ORTHO05D004001 6.2e-11 71.6 70 58.6
Duzib235G1444 Durio zibethinus HOM05D003481 ORTHO05D004001 1.1e-10 70.9 70 55.7
FAN14G4292 Fragaria x ananassa HOM05D003481 ORTHO05D004001 1.1e-10 70.9 73 56.2
GSVIVG01037972001 Vitis vinifera HOM05D003481 ORTHO05D004001 1.1e-10 70.9 70 54.3
FvH4_6g01010 Fragaria vesca HOM05D003481 ORTHO05D004001 1.8e-10 70.1 70 57.1
FAN02G3168 Fragaria x ananassa HOM05D003481 ORTHO05D004001 1.8e-10 70.1 70 57.1
Lj1A1155G48 Lonicera japonica HOM05D003481 ORTHO05D004001 1.8e-10 70.1 75 56.0
Thecc.06G002800 Theobroma cacao HOM05D003481 ORTHO05D004001 2.4e-10 69.7 70 55.7
Cfa000748 Carpinus fangiana HOM05D003481 ORTHO05D004001 3.1e-10 69.3 74 55.4
FAN05G1738 Fragaria x ananassa HOM05D003481 ORTHO05D004001 4.0e-10 68.9 66 59.1
Haze_05980 Corylus avellana HOM05D003481 ORTHO05D004001 6.9e-10 68.2 83 51.8
MD04G1237800 Malus domestica HOM05D003481 ORTHO05D004001 6.9e-10 68.2 70 54.3
TAR624G0033 Trochodendron aralioides HOM05D003481 ORTHO05D004001 9.0e-10 67.8 70 54.3
CSS0014471 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 1.2e-09 67.4 72 51.4
Duzib160G0577 Durio zibethinus HOM05D003481 ORTHO05D004001 1.2e-09 67.4 70 54.3
Gohir.A10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 1.2e-09 67.4 70 55.7
Gohir.D10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 1.2e-09 67.4 70 55.7
Gorai.011G004800 Gossypium raimondii HOM05D003481 ORTHO05D004001 1.2e-09 67.4 70 55.7
Nn4g25046 Nelumbo nucifera HOM05D003481 ORTHO05D004001 1.2e-09 67.4 74 51.4
Prupe.6G356900 Prunus persica HOM05D003481 ORTHO05D004001 1.2e-09 67.4 70 54.3
AUR62028144 Chenopodium quinoa HOM05D003481 ORTHO05D004001 1.5e-09 67.0 74 51.4
Manes.03G069500 Manihot esculenta HOM05D003481 ORTHO05D004001 2.0e-09 66.6 70 51.4
TWI15G0246 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 2.0e-09 66.6 67 50.7
Ca_02512_v3 Cicer arietinum L. HOM05D003481 ORTHO05D004001 2.6e-09 66.2 74 56.8
AUR62005919 Chenopodium quinoa HOM05D003481 ORTHO05D004001 3.4e-09 65.9 74 51.4
Lj6g0004300 Lotus japonicus HOM05D003481 ORTHO05D004001 3.4e-09 65.9 74 55.4
TPR.G22668 Trifolium pratense HOM05D003481 ORTHO05D004001 3.4e-09 65.9 66 59.1
COL.COLO4_26841 Corchorus olitorius HOM05D003481 ORTHO05D004001 4.4e-09 65.5 70 52.9
Ciclev10014122m.g Citrus clementina HOM05D003481 ORTHO05D004001 5.8e-09 65.1 65 50.8
MD12G1256000 Malus domestica HOM05D003481 ORTHO05D004001 5.8e-09 65.1 70 51.4
EL10Ac3g05104 Beta vulgaris HOM05D003481 ORTHO05D004001 7.6e-09 64.7 72 50.0
TWI38G1754 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 7.6e-09 64.7 60 56.7
Potri.011G154000 Populus trichocarpa HOM05D003481 ORTHO05D004001 9.9e-09 64.3 70 55.7
CsaV3_6G052920 Cucumis sativus L. HOM05D003481 ORTHO05D004001 1.3e-08 63.9 65 49.2
Medtr2g047908 Medicago truncatula HOM05D003481 ORTHO05D004001 1.3e-08 63.9 66 57.6
Sc13g0010770 Simmondsia chinensis HOM05D003481 ORTHO05D004001 1.3e-08 63.9 74 50.0
Solyc02g030110.2 Solanum lycopersicum HOM05D003481 ORTHO05D004001 1.3e-08 63.9 73 49.3
Sopen02g009430 Solanum pennellii HOM05D003481 ORTHO05D004001 1.3e-08 63.9 73 49.3
CiPaw.09G149800 Carya illinoinensis HOM05D003481 ORTHO05D004001 1.7e-08 63.5 74 51.4
Hund09767 Selenicereus undatus HOM05D003481 ORTHO05D004001 1.7e-08 63.5 52 61.5
ClCG01G025690 Citrullus lanatus HOM05D003481 ORTHO05D004001 3.8e-08 62.4 70 54.3
QL05p065371 Quercus lobata HOM05D003481 ORTHO05D004001 4.9e-08 62.0 65 47.7
QL08p057617 Quercus lobata HOM05D003481 ORTHO05D004001 4.9e-08 62.0 65 47.7
Sabra11G0145500 Salix brachista HOM05D003481 ORTHO05D004001 4.9e-08 62.0 70 52.9
Atru.chr8.321 Acer truncatum HOM05D003481 ORTHO05D004001 8.4e-08 61.2 109 40.4
SEGI_05968 Sequoiadendron giganteum HOM05D003481 ORTHO05D011771 1.1e-07 60.8 76 38.2
arahy.Tifrunner.gnm1.ann1.D6X22R Arachis hypogaea HOM05D003481 ORTHO05D004001 1.4e-07 60.5 66 53.0
MELO3C007016.2 Cucumis melo HOM05D003481 ORTHO05D004001 1.4e-07 60.5 70 51.4
Lalb_Chr08g0233181 Lupinus albus HOM05D003481 ORTHO05D004001 1.4e-07 60.5 66 54.5
Rhsim13G0126800 Rhododendron simsii HOM05D003481 ORTHO05D004001 1.4e-07 60.5 45 64.4
Ah.13g071230 Amaranthus hybridus HOM05D003481 ORTHO05D004001 1.9e-07 60.1 74 44.6
DCAR_001341 Daucus carota HOM05D003481 ORTHO05D004001 1.9e-07 60.1 74 47.3
FAN09G1882 Fragaria x ananassa HOM05D003481 ORTHO05D004001 1.9e-07 60.1 50 58.0
Nitab4.5_0002444g0030 Nicotiana tabacum HOM05D003481 ORTHO05D004001 1.9e-07 60.1 69 46.4
Sed0003597 Sechium edule HOM05D003481 ORTHO05D004001 1.9e-07 60.1 69 50.7
vmacro03482 Vaccinium macrocarpon HOM05D003481 ORTHO05D004001 1.9e-07 60.1 45 62.2
Actinidia02453 Actinidia chinensis HOM05D003481 ORTHO05D004001 2.4e-07 59.7 45 64.4
Peaxi162Scf00267g00817 Petunia axillaris HOM05D003481 ORTHO05D004001 2.4e-07 59.7 51 52.9
CAN.G306.7 Capsicum annuum HOM05D003481 ORTHO05D004001 3.2e-07 59.3 51 54.9
CSS0048234 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 4.2e-07 58.9 77 48.1
Cc09_g07300 Coffea canephora HOM05D003481 ORTHO05D004001 4.2e-07 58.9 113 39.8
arahy.Tifrunner.gnm1.ann1.0SF8RD Arachis hypogaea HOM05D003481 ORTHO05D004001 5.4e-07 58.5 74 47.3
Sopen02g018780 Solanum pennellii HOM05D003481 ORTHO05D004001 7.1e-07 58.2 70 45.7
Sed0000926 Sechium edule HOM05D003481 ORTHO05D004001 9.3e-07 57.8 70 51.4
Oeu008973.2 Olea europaea HOM05D003481 ORTHO05D004001 2.1e-06 56.6 73 46.6
Phvul.009G217900 Phaseolus vulgaris HOM05D003481 ORTHO05D004001 2.7e-06 56.2 65 52.3
THA.LOC104812894 Tarenaya hassleriana HOM05D003481 ORTHO05D004001 2.7e-06 56.2 72 45.8
CAN.G954.8 Capsicum annuum HOM05D003481 ORTHO05D004001 3.5e-06 55.8 51 52.9
Glyma.15G192300 Glycine max HOM05D003481 ORTHO05D004001 3.5e-06 55.8 65 50.8
SalBow7G3129 Salvia bowleyana HOM05D003481 ORTHO05D004001 4.6e-06 55.5 73 43.8
BolC7t45545H Brassica oleracea HOM05D003481 ORTHO05D004001 7.8e-06 54.7 69 40.6


User provided reference genes

Program Settings