Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0553851 Helianthus annuus HOM05D006341 ORTHO05D000377 1.5e-258 895.6 434 100.0
Lsat_1_v5_gn_8_124961 Lactuca sativa HOM05D006341 ORTHO05D000377 1.4e-211 739.6 455 78.7
ECA233G1460 Erigeron canadensis HOM05D006341 ORTHO05D000377 1.6e-194 682.9 448 75.7
CSS0004411 Camellia sinensis var. sinensis HOM05D006341 ORTHO05D000377 2.0e-181 639.4 491 65.0
Dinv04950 Davidia involucrata HOM05D006341 ORTHO05D000377 4.4e-181 638.3 501 63.9
Duzib132G0346 Durio zibethinus HOM05D006341 ORTHO05D000377 3.1e-179 632.1 477 65.2
Hma1.2p1_0032F.1_g019570 Hydrangea macrophylla HOM05D006341 ORTHO05D000377 3.5e-178 628.6 495 62.6
Ciclev10028267m.g Citrus clementina HOM05D006341 ORTHO05D000377 1.7e-177 626.3 491 63.1
Thecc.02G064100 Theobroma cacao HOM05D006341 ORTHO05D000377 2.9e-177 625.5 479 64.5
COL.COLO4_17298 Corchorus olitorius HOM05D006341 ORTHO05D000377 1.6e-175 619.8 475 63.6
Oeu006673.1 Olea europaea HOM05D006341 ORTHO05D000377 2.8e-175 619.0 502 61.8
Gorai.008G034900 Gossypium raimondii HOM05D006341 ORTHO05D000377 3.1e-174 615.5 476 63.0
Gohir.D12G033900 Gossypium hirsutum HOM05D006341 ORTHO05D000377 5.2e-174 614.8 476 62.8
Gohir.A12G038400 Gossypium hirsutum HOM05D006341 ORTHO05D000377 8.9e-174 614.0 476 62.6
Actinidia00608 Actinidia chinensis HOM05D006341 ORTHO05D000377 1.2e-173 613.6 467 65.3
Manes.11G082657 Manihot esculenta HOM05D006341 ORTHO05D000377 1.2e-173 613.6 486 63.2
Atru.chr5.3271 Acer truncatum HOM05D006341 ORTHO05D000377 1.5e-173 613.2 481 63.8
PGR042G0052 Punica granatum HOM05D006341 ORTHO05D000377 4.4e-173 611.7 462 64.7
Sabra04G0114400 Salix brachista HOM05D006341 ORTHO05D000377 1.3e-172 610.1 494 60.9
Potri.004G172100 Populus trichocarpa HOM05D006341 ORTHO05D000377 1.1e-171 607.1 496 60.9
vmacro02264 Vaccinium macrocarpon HOM05D006341 ORTHO05D000377 9.2e-171 604.0 540 58.1
Cc06_g16120 Coffea canephora HOM05D006341 ORTHO05D000377 2.7e-170 602.4 504 60.3
Haze_02181 Corylus avellana HOM05D006341 ORTHO05D000377 2.7e-170 602.4 475 63.4
Haze_02174 Corylus avellana HOM05D006341 ORTHO05D000377 6.0e-170 601.3 475 63.4
TWI53G1223 Tripterygium wilfordii HOM05D006341 ORTHO05D000377 2.3e-169 599.4 490 61.0
CANSAT25G3024 Cannabis sativa HOM05D006341 ORTHO05D000377 3.0e-169 599.0 486 61.1
CAN.G134.236 Capsicum annuum HOM05D006341 ORTHO05D000377 3.9e-169 598.6 480 62.1
RcHm_v2.0_Chr6g0244411 Rosa chinensis HOM05D006341 ORTHO05D000377 5.0e-169 598.2 483 60.5
COL.COLO4_17179 Corchorus olitorius HOM05D006341 ORTHO05D000377 2.5e-168 595.9 446 65.5
TAR381G0106 Trochodendron aralioides HOM05D006341 ORTHO05D000377 4.3e-168 595.1 505 58.8
FvH4_2g01620 Fragaria vesca HOM05D006341 ORTHO05D000377 5.6e-168 594.7 481 60.1
Sopen01g042030 Solanum pennellii HOM05D006341 ORTHO05D000377 2.8e-167 592.4 484 62.2
MD05G1118100 Malus domestica HOM05D006341 ORTHO05D000377 4.7e-167 591.7 482 60.0
Prupe.8G162700 Prunus persica HOM05D006341 ORTHO05D000377 4.7e-167 591.7 491 60.9
QL11p049167 Quercus lobata HOM05D006341 ORTHO05D000377 6.2e-167 591.3 477 60.6
Aqoxy5G01641 Aquilegia oxysepala HOM05D006341 ORTHO05D000377 8.0e-167 590.9 476 62.2
Solyc01g098460.4 Solanum lycopersicum HOM05D006341 ORTHO05D000377 8.0e-167 590.9 484 62.0
Migut.B00102 Erythranthe guttata HOM05D006341 ORTHO05D000377 1.4e-166 590.1 475 60.0
Nn7g37263 Nelumbo nucifera HOM05D006341 ORTHO05D000377 1.8e-166 589.7 493 59.8
RcHm_v2.0_Chr6g0244441 Rosa chinensis HOM05D006341 ORTHO05D000377 1.8e-166 589.7 482 59.8
Peaxi162Scf00434g00625 Petunia axillaris HOM05D006341 ORTHO05D000377 1.5e-165 586.6 484 61.4
CsaV3_7G000880 Cucumis sativus L. HOM05D006341 ORTHO05D000377 1.7e-164 583.2 486 60.3
Lj5A183G92 Lonicera japonica HOM05D006341 ORTHO05D000377 1.7e-164 583.2 408 70.3
SalBow1G4312 Salvia bowleyana HOM05D006341 ORTHO05D000377 6.0e-162 574.7 483 58.2
THA.LOC104807791 Tarenaya hassleriana HOM05D006341 ORTHO05D000377 1.3e-161 573.5 493 58.0
Eucgr.G01768 Eucalyptus grandis HOM05D006341 ORTHO05D000377 1.7e-161 573.2 464 62.3
AUR62010072 Chenopodium quinoa HOM05D006341 ORTHO05D000377 1.5e-160 570.1 504 58.3
EL10Ac9g21414 Beta vulgaris HOM05D006341 ORTHO05D000377 2.5e-160 569.3 513 57.9
Nitab4.5_0001423g0020 Nicotiana tabacum HOM05D006341 ORTHO05D000377 2.5e-160 569.3 476 59.9
Hund06416 Selenicereus undatus HOM05D006341 ORTHO05D000377 2.5e-160 569.3 516 57.0
BraA04t17219Z Brassica rapa HOM05D006341 ORTHO05D000377 3.3e-160 568.9 449 63.5
SGA_v2.0_scaffold58G20406 Striga asiatica HOM05D006341 ORTHO05D000377 7.3e-160 567.8 470 61.1
Atru.chr5.3277 Acer truncatum HOM05D006341 ORTHO05D000377 3.6e-159 565.5 474 59.1
Thhalv10000146m.g Eutrema salsugineum HOM05D006341 ORTHO05D000377 4.7e-159 565.1 491 59.3
BcaB06g27766 Brassica carinata HOM05D006341 ORTHO05D000377 6.2e-159 564.7 454 61.9
A04p15870 Brassica napus HOM05D006341 ORTHO05D000377 8.1e-159 564.3 452 62.6
Sp4g00210 Schrenkiella parvula HOM05D006341 ORTHO05D000377 1.4e-158 563.5 493 58.0
C04p50300 Brassica napus HOM05D006341 ORTHO05D000377 1.8e-158 563.1 453 62.7
BolC4t26628H Brassica oleracea HOM05D006341 ORTHO05D000377 1.8e-158 563.1 453 62.7
CARHR111910 Cardamine hirsuta HOM05D006341 ORTHO05D000377 1.8e-158 563.1 471 60.3
MSTRG.16892 Avicennia marina HOM05D006341 ORTHO05D000377 2.3e-158 562.8 491 58.2
TPR.G31245 Trifolium pratense HOM05D006341 ORTHO05D000377 3.1e-158 562.4 493 56.4
AL4G10160 Arabidopsis lyrata HOM05D006341 ORTHO05D000377 4.0e-158 562.0 477 59.3
Aa31LG7G15600 Aethionema arabicum HOM05D006341 ORTHO05D000377 1.5e-157 560.1 463 60.0
AT2G21070 Arabidopsis thaliana HOM05D006341 ORTHO05D000377 9.9e-157 557.4 480 59.4
Carub.0003s3491 Capsella rubella HOM05D006341 ORTHO05D000377 1.3e-156 557.0 483 59.2
Dinv39489 Davidia involucrata HOM05D006341 ORTHO05D000377 2.9e-156 555.8 460 61.1
Sc08g0003080 Simmondsia chinensis HOM05D006341 ORTHO05D000377 4.9e-156 555.1 498 58.0
MBI02_g27965_MAGBIO Magnolia biondii HOM05D006341 ORTHO05D000377 1.1e-155 553.9 481 58.4
Rhsim11G0190600 Rhododendron simsii HOM05D006341 ORTHO05D000377 1.4e-155 553.5 501 57.1
FAN20G2467 Fragaria x ananassa HOM05D006341 ORTHO05D000377 1.9e-155 553.1 393 65.9
Os02g0121200 Oryza sativa ssp. japonica HOM05D006341 ORTHO05D000377 2.4e-155 552.7 460 60.4
Lj4g0012983 Lotus japonicus HOM05D006341 ORTHO05D000377 3.2e-155 552.4 480 56.9
FAN24G0408 Fragaria x ananassa HOM05D006341 ORTHO05D000377 4.1e-155 552.0 393 66.2
Psat7g085760 Pisum sativum HOM05D006341 ORTHO05D000377 5.4e-155 551.6 490 55.3
unitig_60.g25823 Utricularia gibba HOM05D006341 ORTHO05D000377 2.1e-154 549.7 460 58.9
Nitab4.5_0001903g0070 Nicotiana tabacum HOM05D006341 ORTHO05D000377 6.0e-154 548.1 404 65.3
GSVIVG01024058001 Vitis vinifera HOM05D006341 ORTHO05D000377 7.8e-154 547.7 464 61.2
MELO3C013369.2 Cucumis melo HOM05D006341 ORTHO05D000377 8.6e-153 544.3 412 64.1
Sed0009186 Sechium edule HOM05D006341 ORTHO05D000377 3.3e-152 542.3 407 64.1
HPP92_014019 Vanilla planifolia HOM05D006341 ORTHO05D000377 2.1e-151 539.7 474 57.4
Ca_18243_v3 Cicer arietinum L. HOM05D006341 ORTHO05D000377 2.0e-149 533.1 463 58.1
CDE05G1540 Ceratophyllum demersum HOM05D006341 ORTHO05D000377 4.4e-149 531.9 503 54.3
arahy.Tifrunner.gnm1.ann1.UN7M5W Arachis hypogaea HOM05D006341 ORTHO05D000377 9.9e-149 530.8 488 55.1
arahy.Tifrunner.gnm1.ann1.MR7L4V Arachis hypogaea HOM05D006341 ORTHO05D000377 1.4e-147 526.9 489 54.4
Ah.01g008830 Amaranthus hybridus HOM05D006341 ORTHO05D000377 3.5e-146 522.3 492 56.3
ClCG02G004230 Citrullus lanatus HOM05D006341 ORTHO05D000377 5.6e-144 515.0 505 55.4
Glyma.08G087700 Glycine max HOM05D006341 ORTHO05D000377 4.8e-143 511.9 486 54.9
Glyma.05G133200 Glycine max HOM05D006341 ORTHO05D000377 2.9e-140 502.7 484 53.7
Lalb_Chr13g0293551 Lupinus albus HOM05D006341 ORTHO05D000377 4.9e-140 501.9 516 50.0
ATR0810G159 Amborella trichopoda HOM05D006341 ORTHO05D000377 9.3e-139 497.7 495 53.7
SHI05717 Sapria himalayana HOM05D006341 ORTHO05D000377 5.3e-134 481.9 473 52.4
VMungo0251G3227 Vigna mungo HOM05D006341 ORTHO05D000377 6.9e-134 481.5 461 54.2
SEGI_13829 Sequoiadendron giganteum HOM05D006341 ORTHO05D000377 1.8e-126 456.8 491 49.5
SEGI_22420 Sequoiadendron giganteum HOM05D006341 ORTHO05D000377 1.8e-126 456.8 491 49.5
Phvul.002G189600 Phaseolus vulgaris HOM05D006341 ORTHO05D000377 7.6e-125 451.4 461 52.9
AagrBONN_evm.TU.Sc2ySwM_228.2682 Anthoceros agrestis HOM05D006341 ORTHO05D000377 3.8e-124 449.1 454 50.2
QL11p048584 Quercus lobata HOM05D006341 ORTHO05D000377 1.6e-122 443.7 431 53.6
Cpa.g.sc37.173 Carica papaya HOM05D006341 ORTHO05D000377 3.4e-117 426.0 454 50.2
Mapoly0085s0033 Marchantia polymorpha HOM05D006341 ORTHO05D000377 7.6e-117 424.9 542 43.7
Potri.009G131700 Populus trichocarpa HOM05D006341 ORTHO05D000377 1.1e-115 421.0 313 64.5
Zm00001eb208320 Zea mays HOM05D006341 ORTHO05D000377 1.2e-114 417.5 380 55.3
Pp3c8_21040 Physcomitrium patens HOM05D006341 ORTHO05D000377 1.1e-110 404.4 521 42.2
SMO169G0079 Selaginella moellendorffii HOM05D006341 ORTHO05D000377 4.3e-104 382.5 403 49.1
Atru.chr5.3221 Acer truncatum HOM05D006341 ORTHO05D000377 1.4e-99 367.5 309 61.2
Nitab4.5_0008354g0020 Nicotiana tabacum HOM05D006341 ORTHO05D000377 3.6e-98 362.8 304 61.2
CiPaw.06G124100 Carya illinoinensis HOM05D006341 ORTHO05D000377 1.1e-94 351.3 350 52.0
Ca_18241_v3 Cicer arietinum L. HOM05D006341 ORTHO05D000377 5.9e-93 345.5 395 47.3
Carub.0004s0010 Capsella rubella HOM05D006341 ORTHO05D000377 1.1e-88 331.3 483 42.9
FAN22G0308 Fragaria x ananassa HOM05D003409 ORTHO05D004015 4.8e-79 299.3 280 56.1
MCO01G168 Micromonas commoda HOM05D006341 ORTHO05D000377 2.5e-67 260.4 304 44.1
PGSC0003DMG401028564 Solanum tuberosum HOM05D006341 ORTHO05D000377 2.9e-63 246.9 143 76.2
Cre01.g044150 Chlamydomonas reinhardtii HOM05D006341 ORTHO05D000377 4.6e-61 239.6 387 34.9
Sabra09G0102100 Salix brachista HOM05D006341 ORTHO05D000377 9.5e-59 231.9 306 44.8
CBR_g23939 Chara braunii HOM05D006341 ORTHO05D000377 2.3e-41 174.1 810 23.0
PRCOL_00006207 Prasinoderma coloniale HOM05D006341 ORTHO05D000377 9.2e-38 162.2 336 31.0
FAN07G1625 Fragaria x ananassa HOM05D006341 ORTHO05D000377 1.8e-33 147.9 111 64.0
PGSC0003DMG402028564 Solanum tuberosum HOM05D006341 ORTHO05D000377 8.9e-33 145.6 102 69.6
Oeu063293.1 Olea europaea HOM05D006341 ORTHO05D000377 3.3e-27 127.1 150 49.3
Actinidia20497 Actinidia chinensis HOM05D006341 ORTHO05D000377 1.1e-25 122.1 73 74.0
Atru.chr5.3222 Acer truncatum HOM05D006341 ORTHO05D000377 2.0e-16 91.3 84 57.1
FAN07G2354 Fragaria x ananassa HOM05D006341 ORTHO05D000377 4.3e-11 73.6 134 33.6
HanXRQChr01g0015331 Helianthus annuus HOM05D003934 ORTHO05D226262 8.4e-07 59.3 32 84.4


User provided reference genes

Program Settings