Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0551501 Helianthus annuus HOM05D004087 ORTHO05D004787 1.0e-95 353.6 201 100.0
Lsat_1_v5_gn_7_84781 Lactuca sativa HOM05D004087 ORTHO05D004787 2.8e-61 239.2 223 71.3
ECA236G0105 Erigeron canadensis HOM05D004087 ORTHO05D004787 5.9e-56 221.5 209 70.8
Hma1.2p1_0661F.1_g198070 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 1.6e-48 196.8 206 60.7
Dinv09536 Davidia involucrata HOM05D004087 ORTHO05D004787 3.6e-45 185.7 204 58.8
TAR628G1056 Trochodendron aralioides HOM05D000194 ORTHO05D000069 8.0e-45 184.5 177 59.9
Prupe.8G150800 Prunus persica HOM05D004087 ORTHO05D004787 2.3e-44 183.0 204 55.9
Cfa004696 Carpinus fangiana HOM05D004087 ORTHO05D004787 3.1e-44 182.6 201 61.2
Actinidia00355 Actinidia chinensis HOM05D004087 ORTHO05D004787 4.0e-44 182.2 207 58.0
GSVIVG01037047001 Vitis vinifera HOM05D004087 ORTHO05D004787 4.0e-44 182.2 208 56.7
Atru.chr5.2274 Acer truncatum HOM05D004087 ORTHO05D004787 1.5e-43 180.3 199 58.8
CSS0031122 Camellia sinensis var. sinensis HOM05D004087 ORTHO05D004787 1.5e-43 180.3 207 57.5
Nn5g30675 Nelumbo nucifera HOM05D004087 ORTHO05D004787 3.4e-43 179.1 206 56.8
CANSAT25G1673 Cannabis sativa HOM05D004087 ORTHO05D004787 5.8e-43 178.3 163 66.9
RcHm_v2.0_Chr6g0248281 Rosa chinensis HOM05D004087 ORTHO05D004787 9.8e-43 177.6 212 54.7
COL.COLO4_32481 Corchorus olitorius HOM05D004087 ORTHO05D004787 1.3e-42 177.2 187 58.3
QL11p029242 Quercus lobata HOM05D004087 ORTHO05D004787 3.7e-42 175.6 202 57.4
CiPaw.05G021000 Carya illinoinensis HOM05D004087 ORTHO05D004787 4.9e-42 175.3 211 56.4
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 1.1e-41 174.1 193 54.9
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 3.2e-41 172.6 193 54.4
FAN27G0771 Fragaria x ananassa HOM05D004087 ORTHO05D004787 4.1e-41 172.2 207 53.1
AT4G33780 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 5.4e-41 171.8 206 53.9
FAN24G1045 Fragaria x ananassa HOM05D004087 ORTHO05D004787 7.0e-41 171.4 211 55.0
Potri.001G289600 Populus trichocarpa HOM05D004087 ORTHO05D004787 7.0e-41 171.4 203 54.2
FvH4_2g03150 Fragaria vesca HOM05D004087 ORTHO05D004787 1.2e-40 170.6 212 54.2
Duzib132G0587 Durio zibethinus HOM05D004087 ORTHO05D004787 1.6e-40 170.2 162 62.3
FAN20G2318 Fragaria x ananassa HOM05D004087 ORTHO05D004787 1.6e-40 170.2 209 54.5
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 1.6e-40 170.2 193 54.4
ClCG02G007130 Citrullus lanatus HOM05D004087 ORTHO05D004787 2.1e-40 169.9 202 56.9
Sed0019763 Sechium edule HOM05D004087 ORTHO05D004787 2.1e-40 169.9 207 56.0
Thecc.02G120300 Theobroma cacao HOM05D004087 ORTHO05D004787 2.1e-40 169.9 207 57.5
PGR042G2373 Punica granatum HOM05D004087 ORTHO05D004787 3.5e-40 169.1 207 51.7
FAN15G0324 Fragaria x ananassa HOM05D004087 ORTHO05D004787 7.8e-40 167.9 212 53.3
Eucgr.G01187 Eucalyptus grandis HOM05D004087 ORTHO05D004787 1.3e-39 167.2 193 51.8
PSO170G3120 Papaver somniferum HOM05D004087 ORTHO05D004787 1.3e-39 167.2 158 60.8
PSO017G3065 Papaver somniferum HOM05D004087 ORTHO05D004787 2.3e-39 166.4 158 55.1
CARHR241870 Cardamine hirsuta HOM05D004087 ORTHO05D004787 5.1e-39 165.2 207 52.7
AL7G17680 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 8.6e-39 164.5 169 59.2
Ciclev10029333m.g Citrus clementina HOM05D004087 ORTHO05D004787 8.6e-39 164.5 162 63.0
CsaV3_7G007690 Cucumis sativus L. HOM05D004087 ORTHO05D004787 1.1e-38 164.1 201 55.7
Aa31sc355G20 Aethionema arabicum HOM05D004087 ORTHO05D004787 2.5e-38 162.9 216 54.6
Hund06503 Selenicereus undatus HOM05D004087 ORTHO05D004787 2.5e-38 162.9 210 55.2
Manes.10G087100 Manihot esculenta HOM05D004087 ORTHO05D004787 3.3e-38 162.5 139 73.4
Carub.0007s0665 Capsella rubella HOM05D004087 ORTHO05D004787 7.3e-38 161.4 209 50.2
Sc05g0005570 Simmondsia chinensis HOM05D004087 ORTHO05D004787 7.3e-38 161.4 143 67.8
ATR0739G081 Amborella trichopoda HOM05D004087 ORTHO05D004787 1.2e-37 160.6 164 61.0
Aqoxy6G02440 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 1.2e-37 160.6 110 71.8
Sp7g31520 Schrenkiella parvula HOM05D004087 ORTHO05D004787 1.2e-37 160.6 206 52.4
Hund06504 Selenicereus undatus HOM05D004087 ORTHO05D004787 2.1e-37 159.8 210 55.2
C01p04920 Brassica napus HOM05D004087 ORTHO05D004787 6.2e-37 158.3 209 53.6
Ah.01g007120 Amaranthus hybridus HOM05D004087 ORTHO05D004787 8.1e-37 157.9 161 64.0
Cc02_g20080 Coffea canephora HOM05D004087 ORTHO05D004787 1.1e-36 157.5 205 52.7
Sopen01g049120 Solanum pennellii HOM05D004087 ORTHO05D004787 1.1e-36 157.5 162 59.9
A03p62320 Brassica napus HOM05D004087 ORTHO05D004787 1.4e-36 157.1 165 61.2
BraA03t15307Z Brassica rapa HOM05D004087 ORTHO05D004787 1.4e-36 157.1 165 61.2
BcaNung04672 Brassica carinata HOM05D004087 ORTHO05D004787 1.8e-36 156.8 212 52.4
DCAR_021942 Daucus carota HOM05D004087 ORTHO05D004787 1.8e-36 156.8 220 55.0
Thhalv10026262m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 1.8e-36 156.8 208 53.4
Nitab4.5_0000772g0090 Nicotiana tabacum HOM05D004087 ORTHO05D004787 2.3e-36 156.4 196 54.6
Sabra16G0181200 Salix brachista HOM05D004087 ORTHO05D004787 2.3e-36 156.4 185 54.6
CDE04G2047 Ceratophyllum demersum HOM05D004087 ORTHO05D004787 3.1e-36 156.0 111 68.5
THA.LOC104807209 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 5.2e-36 155.2 209 49.3
Solyc01g106810.4 Solanum lycopersicum HOM05D004087 ORTHO05D004787 8.9e-36 154.5 162 58.6
BcaNung02921 Brassica carinata HOM05D004087 ORTHO05D004787 1.2e-35 154.1 110 68.2
BolC7t46432H Brassica oleracea HOM05D004087 ORTHO05D004787 1.2e-35 154.1 110 68.2
TWI59G0284 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 1.5e-35 153.7 143 60.1
BraA01t00439Z Brassica rapa HOM05D004087 ORTHO05D004787 2.0e-35 153.3 208 51.9
Oeu028917.1 Olea europaea HOM05D004087 ORTHO05D004787 2.6e-35 152.9 107 68.2
BcaNung04326 Brassica carinata HOM05D004087 ORTHO05D004787 3.4e-35 152.5 109 67.9
BcaC09g52189 Brassica carinata HOM05D000477 ORTHO05D000338 4.4e-35 152.1 106 68.9
BolC1t00476H Brassica oleracea HOM05D004087 ORTHO05D004787 4.4e-35 152.1 203 53.7
Migut.B00471 Erythranthe guttata HOM05D004087 ORTHO05D004787 5.8e-35 151.8 203 53.7
PGSC0003DMG400025835 Solanum tuberosum HOM05D004087 ORTHO05D004787 7.5e-35 151.4 192 53.6
Glyma.01G241400 Glycine max HOM05D004087 ORTHO05D004787 9.9e-35 151.0 164 51.2
MD05G1106700 Malus domestica HOM05D004087 ORTHO05D004787 9.9e-35 151.0 212 51.4
C07p59880 Brassica napus HOM05D004087 ORTHO05D004787 2.2e-34 149.8 212 51.9
CDE06G2321 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 1.9e-33 146.7 103 68.9
Phvul.002G050600 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 9.2e-33 144.4 112 66.1
Nitab4.5_0009103g0030 Nicotiana tabacum HOM05D004087 ORTHO05D004787 3.5e-32 142.5 186 52.2
Peaxi162Scf00016g03121 Petunia axillaris HOM05D004087 ORTHO05D004787 1.3e-31 140.6 194 51.0
EL10Ac9g22175 Beta vulgaris HOM05D004087 ORTHO05D004787 3.3e-30 136.0 277 42.6
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 3.1e-28 129.4 99 66.7
MBI16_g37623_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 6.8e-28 128.3 111 60.4
SGA_v2.0_scaffold32G12983 Striga asiatica HOM05D004087 ORTHO05D004787 4.4e-27 125.6 92 64.1
Zm00001eb009500 Zea mays HOM05D004087 ORTHO05D004787 9.9e-27 124.4 159 52.2
CAN.G300.5 Capsicum annuum HOM05D004087 ORTHO05D004787 1.9e-25 120.2 206 48.5
BcaC03g14363 Brassica carinata HOM05D004087 ORTHO05D004787 7.1e-25 118.2 74 79.7
vmacro01944 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 2.7e-24 116.3 74 75.7
BolC2t07908H Brassica oleracea HOM05D004087 ORTHO05D004787 6.0e-24 115.2 73 78.1
Nitab4.5_0000710g0070 Nicotiana tabacum HOM05D004087 ORTHO05D004787 1.3e-23 114.0 110 55.5
MD10G1111500 Malus domestica HOM05D004087 ORTHO05D004787 2.3e-23 113.2 174 52.3
Manes.05G094600 Manihot esculenta HOM05D004087 ORTHO05D004787 3.0e-23 112.8 110 56.4
Actinidia01168 Actinidia chinensis HOM05D004087 ORTHO05D004787 3.9e-23 112.5 110 55.5
Solyc04g005120.3 Solanum lycopersicum HOM05D004087 ORTHO05D004787 5.1e-23 112.1 110 54.5
Sopen04g001140 Solanum pennellii HOM05D004087 ORTHO05D004787 5.1e-23 112.1 110 54.5
Peaxi162Scf00187g00617 Petunia axillaris HOM05D004087 ORTHO05D004787 1.1e-22 110.9 110 56.4
Potri.008G190900 Populus trichocarpa HOM05D004087 ORTHO05D004787 1.9e-22 110.2 110 54.5
SalBow6G0931 Salvia bowleyana HOM05D004087 ORTHO05D004787 1.9e-22 110.2 86 60.5
MELO3C018531.2 Cucumis melo HOM05D004087 ORTHO05D004787 4.3e-22 109.0 148 56.8
Sabra08G0144800 Salix brachista HOM05D004087 ORTHO05D004787 4.3e-22 109.0 110 53.6
CiPaw.06G078300 Carya illinoinensis HOM05D004087 ORTHO05D004787 7.3e-22 108.2 110 53.6
Haze_10292 Corylus avellana HOM05D004087 ORTHO05D004787 6.2e-21 105.1 282 37.6
Ciclev10032809m.g Citrus clementina HOM05D004087 ORTHO05D004787 1.1e-20 104.4 105 53.3
COL.COLO4_36242 Corchorus olitorius HOM05D004087 ORTHO05D004787 1.1e-20 104.4 110 51.8
Cpa.g.sc5.304 Carica papaya HOM05D004087 ORTHO05D004787 3.1e-20 102.8 111 50.5
Eucgr.B02582 Eucalyptus grandis HOM05D004087 ORTHO05D004787 3.1e-20 102.8 155 38.7
Gohir.D04G136500 Gossypium hirsutum HOM05D004087 ORTHO05D004787 6.9e-20 101.7 108 49.1
Gorai.012G120300 Gossypium raimondii HOM05D004087 ORTHO05D004787 6.9e-20 101.7 108 49.1
C02p17780 Brassica napus HOM05D004087 ORTHO05D004787 1.5e-19 100.5 61 80.3
Gohir.A13G047950 Gossypium hirsutum HOM05D004087 ORTHO05D004787 1.5e-19 100.5 110 50.0
Atru.chr11.1891 Acer truncatum HOM05D004087 ORTHO05D004787 5.8e-19 98.6 105 48.6
RhsimUnG0040800 Rhododendron simsii HOM05D004087 ORTHO05D004787 5.8e-19 98.6 224 37.5
A01p04540 Brassica napus HOM05D004087 ORTHO05D004787 7.6e-19 98.2 158 51.3
Glyma.01G039100 Glycine max HOM05D004087 ORTHO05D004787 7.6e-19 98.2 102 49.0
Lj2g0011291 Lotus japonicus HOM05D004087 ORTHO05D004787 7.6e-19 98.2 103 49.5
Lalb_Chr05g0217411 Lupinus albus HOM05D004087 ORTHO05D004787 1.3e-18 97.4 102 50.0
PSO832G0995 Papaver somniferum HOM05D004087 ORTHO05D004787 1.3e-18 97.4 210 39.0
Phvul.002G079300 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 1.7e-18 97.1 92 51.1
TAR622G0570 Trochodendron aralioides HOM05D004087 ORTHO05D004787 1.7e-18 97.1 110 48.2
VMungo1215G1106 Vigna mungo HOM05D004087 ORTHO05D004787 2.2e-18 96.7 102 49.0
MBI01_g41231_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 2.9e-18 96.3 110 48.2
Haze_12080 Corylus avellana HOM05D004087 ORTHO05D004787 3.8e-18 95.9 110 49.1
Aqoxy3G03190 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 4.9e-18 95.5 87 55.2
Glyma.02G025600 Glycine max HOM05D004087 ORTHO05D004787 4.9e-18 95.5 98 49.0
Hma1.2p1_0289F.1_g114450 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 6.4e-18 95.1 111 47.7
PSO591G0142 Papaver somniferum HOM05D004087 ORTHO05D004787 6.4e-18 95.1 188 41.5
PGR119G1273 Punica granatum HOM05D004087 ORTHO05D004787 6.4e-18 95.1 107 48.6
TPR.G26706 Trifolium pratense HOM05D004087 ORTHO05D004787 1.1e-17 94.4 102 45.1
GSVIVG01020122001 Vitis vinifera HOM05D004087 ORTHO05D004787 1.9e-17 93.6 87 57.5
THA.LOC104822080 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 2.4e-17 93.2 87 51.7
BcaB03g14773 Brassica carinata HOM05D004087 ORTHO05D004787 3.2e-17 92.8 87 52.9
Medtr5g037230 Medicago truncatula HOM05D004087 ORTHO05D004787 4.2e-17 92.4 102 45.1
VMungo1215G2093 Vigna mungo HOM05D004087 ORTHO05D004787 4.2e-17 92.4 99 51.5
C06p43810 Brassica napus HOM05D004087 ORTHO05D004787 5.4e-17 92.0 87 51.7
BcaC08g46444 Brassica carinata HOM05D004087 ORTHO05D004787 7.1e-17 91.7 179 36.9
BolC6t39453H Brassica oleracea HOM05D004087 ORTHO05D004787 7.1e-17 91.7 179 36.9
Cfa009049 Carpinus fangiana HOM05D004087 ORTHO05D004787 7.1e-17 91.7 110 48.2
Rhsim12G0127500 Rhododendron simsii HOM05D004087 ORTHO05D004787 7.1e-17 91.7 110 46.4
Sp5g25060 Schrenkiella parvula HOM05D004087 ORTHO05D004787 9.3e-17 91.3 87 52.9
A07p36390 Brassica napus HOM05D004087 ORTHO05D004787 1.2e-16 90.9 87 51.7
BraA07t31211Z Brassica rapa HOM05D004087 ORTHO05D004787 1.2e-16 90.9 87 51.7
unitig_0.g632 Utricularia gibba HOM05D004087 ORTHO05D004787 1.2e-16 90.9 60 73.3
CARHR063040 Cardamine hirsuta HOM05D004087 ORTHO05D004787 2.1e-16 90.1 87 51.7
arahy.Tifrunner.gnm1.ann1.0DC02M Arachis hypogaea HOM05D004087 ORTHO05D004787 4.6e-16 89.0 99 49.5
arahy.Tifrunner.gnm1.ann1.F53DZL Arachis hypogaea HOM05D004087 ORTHO05D004787 4.6e-16 89.0 99 49.5
Thhalv10019201m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 7.8e-16 88.2 87 49.4
AL2G29180 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 1.0e-15 87.8 87 49.4
Lsat_1_v5_gn_3_112521 Lactuca sativa HOM05D004087 ORTHO05D004787 1.0e-15 87.8 100 66.0
AT1G69935 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 3.0e-15 86.3 87 48.3
Carub.0002s1665 Capsella rubella HOM05D004087 ORTHO05D004787 3.0e-15 86.3 87 48.3
Dinv24938 Davidia involucrata HOM05D004087 ORTHO05D004787 3.0e-15 86.3 97 49.5
Lsat_1_v5_gn_9_118200 Lactuca sativa HOM05D004087 ORTHO05D004787 3.0e-15 86.3 100 64.0
AUR62030868 Chenopodium quinoa HOM05D004087 ORTHO05D004787 8.7e-15 84.7 91 52.7
Psat2g117160 Pisum sativum HOM05D004087 ORTHO05D004787 2.5e-14 83.2 102 41.2
Lj5A221T58 Lonicera japonica HOM05D004087 ORTHO05D004787 1.5e-11 73.9 140 52.1
PGSC0003DMG400001914 Solanum tuberosum HOM05D000067 ORTHO05D000097 1.7e-10 70.5 72 52.8
Lsat_1_v5_gn_5_182360 Lactuca sativa HOM05D004087 ORTHO05D004787 8.4e-10 68.2 67 73.1
AagrBONN_evm.TU.Sc2ySwM_344.3821 Anthoceros agrestis HOM05D004087 ORTHO05D004787 4.2e-09 65.9 98 36.7
Mapoly0011s0173 Marchantia polymorpha HOM05D004087 ORTHO05D004787 1.6e-08 63.9 87 29.9
Duzib268G0252 Durio zibethinus HOM05D004087 ORTHO05D004787 3.5e-08 62.8 67 49.3
Nn1g03866 Nelumbo nucifera HOM05D004087 ORTHO05D004787 3.5e-08 62.8 110 36.4
Cpa.g.sc106.30 Carica papaya HOM05D004087 ORTHO05D004787 6.0e-08 62.0 69 66.7
QL03p066700 Quercus lobata HOM05D004087 ORTHO05D004787 7.9e-08 61.6 69 50.7
vmacro16306 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 7.9e-08 61.6 74 45.9
Os02g0531900 Oryza sativa ssp. japonica HOM05D004087 ORTHO05D004787 1.0e-07 61.2 52 51.9
Ca_28186_v3 Cicer arietinum L. HOM05D004087 ORTHO05D004787 2.3e-07 60.1 66 48.5


User provided reference genes

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