Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0550171 Helianthus annuus HOM05D005595 ORTHO05D006962 2.4e-83 312.0 146 100.0
ECA232G1699 Erigeron canadensis HOM05D005595 ORTHO05D006962 5.6e-48 194.5 144 71.5
TWI23G0028 Tripterygium wilfordii HOM05D005595 ORTHO05D006962 1.3e-47 193.4 144 69.4
Lj3A195G12 Lonicera japonica HOM05D005595 ORTHO05D006962 1.6e-47 193.0 147 70.1
TWI59G1157 Tripterygium wilfordii HOM05D005595 ORTHO05D006962 3.7e-47 191.8 144 68.8
Eucgr.J02309 Eucalyptus grandis HOM05D005595 ORTHO05D006962 4.8e-47 191.4 144 68.8
FvH4_6g53020 Fragaria vesca HOM05D005595 ORTHO05D006962 6.2e-47 191.0 144 68.1
Cc07_g00580 Coffea canephora HOM05D005595 ORTHO05D006962 8.2e-47 190.7 144 68.1
Dinv37839 Davidia involucrata HOM05D005595 ORTHO05D006962 8.2e-47 190.7 144 70.1
Duzib093G1178 Durio zibethinus HOM05D005595 ORTHO05D006962 1.1e-46 190.3 144 67.4
CANSAT64G2788 Cannabis sativa HOM05D005595 ORTHO05D006962 1.4e-46 189.9 144 69.4
CiPaw.03G052400 Carya illinoinensis HOM05D005595 ORTHO05D006962 1.4e-46 189.9 144 68.8
AUR62029058 Chenopodium quinoa HOM05D005595 ORTHO05D006962 1.4e-46 189.9 144 68.8
QL02p072441 Quercus lobata HOM05D005595 ORTHO05D006962 1.4e-46 189.9 144 68.8
EL10Ac8g19198 Beta vulgaris HOM05D005595 ORTHO05D006962 1.8e-46 189.5 144 69.4
HanXRQChr08g0233931 Helianthus annuus HOM05D005595 ORTHO05D006962 1.8e-46 189.5 144 70.1
Phvul.010G007100 Phaseolus vulgaris HOM05D005595 ORTHO05D006962 1.8e-46 189.5 144 68.1
RcHm_v2.0_Chr2g0174761 Rosa chinensis HOM05D005595 ORTHO05D006962 1.8e-46 189.5 144 67.4
AUR62034098 Chenopodium quinoa HOM05D005595 ORTHO05D006962 2.4e-46 189.1 144 68.8
Dinv33365 Davidia involucrata HOM05D005595 ORTHO05D006962 2.4e-46 189.1 144 68.8
Duzib041G0186 Durio zibethinus HOM05D005595 ORTHO05D006962 2.4e-46 189.1 144 67.4
Gohir.D05G248400 Gossypium hirsutum HOM05D005595 ORTHO05D006962 2.4e-46 189.1 144 67.4
Gorai.009G259400 Gossypium raimondii HOM05D005595 ORTHO05D006962 2.4e-46 189.1 144 67.4
Prupe.3G148400 Prunus persica HOM05D005595 ORTHO05D006962 2.4e-46 189.1 144 68.1
Nitab4.5_0000401g0090 Nicotiana tabacum HOM05D005595 ORTHO05D006962 3.1e-46 188.7 144 68.8
Nitab4.5_0006964g0020 Nicotiana tabacum HOM05D005595 ORTHO05D006962 3.1e-46 188.7 144 68.8
SGA_v2.0_scaffold47G17577 Striga asiatica HOM05D005595 ORTHO05D006962 3.1e-46 188.7 144 68.1
vmacro18324 Vaccinium macrocarpon HOM05D005595 ORTHO05D006962 3.1e-46 188.7 164 62.2
GSVIVG01001821001 Vitis vinifera HOM05D005595 ORTHO05D006962 3.1e-46 188.7 144 68.1
FAN05G0361 Fragaria x ananassa HOM05D005595 ORTHO05D006962 4.0e-46 188.3 144 67.4
Peaxi162Scf00047g00333 Petunia axillaris HOM05D005595 ORTHO05D006962 4.0e-46 188.3 144 68.1
PGR083G2585 Punica granatum HOM05D005595 ORTHO05D006962 4.0e-46 188.3 144 67.4
RcHm_v2.0_Chr4g0409361 Rosa chinensis HOM05D005595 ORTHO05D006962 4.0e-46 188.3 144 67.4
Haze_14834 Corylus avellana HOM05D005595 ORTHO05D006962 5.3e-46 188.0 144 67.4
Peaxi162Scf00753g00428 Petunia axillaris HOM05D005595 ORTHO05D006962 5.3e-46 188.0 144 68.1
arahy.Tifrunner.gnm1.ann1.AY8PV2 Arachis hypogaea HOM05D005595 ORTHO05D006962 6.9e-46 187.6 149 67.1
Glyma.19G075200 Glycine max HOM05D005595 ORTHO05D006962 6.9e-46 187.6 144 67.4
Glyma.19G180500 Glycine max HOM05D005595 ORTHO05D006962 6.9e-46 187.6 144 67.4
Oeu035209.1 Olea europaea HOM05D005595 ORTHO05D006962 6.9e-46 187.6 144 68.1
CAN.G1333.9 Capsicum annuum HOM05D005595 ORTHO05D006962 9.0e-46 187.2 144 67.4
Nn1g08708 Nelumbo nucifera HOM05D005595 ORTHO05D006962 9.0e-46 187.2 144 68.8
THA.LOC104809576 Tarenaya hassleriana HOM05D005595 ORTHO05D006962 9.0e-46 187.2 144 68.1
Atru.chr6.2514 Acer truncatum HOM05D005595 ORTHO05D006962 1.2e-45 186.8 144 67.4
Ca_16345_v3 Cicer arietinum L. HOM05D005595 ORTHO05D006962 1.5e-45 186.4 144 66.7
Gohir.A05G246900 Gossypium hirsutum HOM05D005595 ORTHO05D006962 2.0e-45 186.0 144 66.7
COL.COLO4_13732 Corchorus olitorius HOM05D005595 ORTHO05D006962 2.6e-45 185.7 144 67.4
Aqoxy5G03493 Aquilegia oxysepala HOM05D005595 ORTHO05D006962 3.4e-45 185.3 144 65.3
arahy.Tifrunner.gnm1.ann1.HCN1MH Arachis hypogaea HOM05D005595 ORTHO05D006962 3.4e-45 185.3 149 66.4
MSTRG.15560 Avicennia marina HOM05D005595 ORTHO05D006962 3.4e-45 185.3 144 68.1
Oeu013953.1 Olea europaea HOM05D005595 ORTHO05D006962 3.4e-45 185.3 144 66.7
VMungo1127G0708 Vigna mungo HOM05D005595 ORTHO05D006962 3.4e-45 185.3 144 66.7
Manes.17G105900 Manihot esculenta HOM05D005595 ORTHO05D006962 4.5e-45 184.9 144 68.1
Hund25939 Selenicereus undatus HOM05D005595 ORTHO05D006962 4.5e-45 184.9 144 67.4
Lalb_Chr05g0227671 Lupinus albus HOM05D005595 ORTHO05D006962 5.8e-45 184.5 144 66.7
Potri.017G066000 Populus trichocarpa HOM05D005595 ORTHO05D006962 5.8e-45 184.5 144 68.1
Ca_04418_v3 Cicer arietinum L. HOM05D005595 ORTHO05D006962 7.6e-45 184.1 144 66.0
Medtr3g082760 Medicago truncatula HOM05D005595 ORTHO05D006962 7.6e-45 184.1 144 63.9
Sed0017898 Sechium edule HOM05D005595 ORTHO05D006962 7.6e-45 184.1 144 65.3
Solyc09g092090.4 Solanum lycopersicum HOM05D005595 ORTHO05D006962 7.6e-45 184.1 144 66.7
Sopen09g034960 Solanum pennellii HOM05D005595 ORTHO05D006962 7.6e-45 184.1 144 66.7
PGSC0003DMG400026415 Solanum tuberosum HOM05D005595 ORTHO05D006962 7.6e-45 184.1 144 66.7
Potri.001G334000 Populus trichocarpa HOM05D005595 ORTHO05D006962 1.0e-44 183.7 144 67.4
TAR625G0935 Trochodendron aralioides HOM05D005595 ORTHO05D006962 1.0e-44 183.7 144 67.4
CSS0030746 Camellia sinensis var. sinensis HOM05D005595 ORTHO05D006962 1.3e-44 183.3 144 66.0
Glyma.20G058200 Glycine max HOM05D005595 ORTHO05D006962 1.3e-44 183.3 144 66.0
MD17G1015300 Malus domestica HOM05D005595 ORTHO05D006962 1.3e-44 183.3 144 64.6
TAR633G2523 Trochodendron aralioides HOM05D005595 ORTHO05D006962 1.3e-44 183.3 144 66.7
Aa31LG5G10920 Aethionema arabicum HOM05D005595 ORTHO05D006962 1.7e-44 183.0 144 66.7
Lsat_1_v5_gn_4_185480 Lactuca sativa HOM05D005595 ORTHO05D006962 1.7e-44 183.0 144 67.4
Psat5g104400 Pisum sativum HOM05D005595 ORTHO05D006962 1.7e-44 183.0 144 63.9
Nn3g20286 Nelumbo nucifera HOM05D005595 ORTHO05D006962 2.2e-44 182.6 144 66.7
Thecc.08G161400 Theobroma cacao HOM05D005595 ORTHO05D006962 2.2e-44 182.6 144 66.0
AT3G01790 Arabidopsis thaliana HOM05D005595 ORTHO05D006962 3.8e-44 181.8 144 67.4
Carub.0003s0027 Capsella rubella HOM05D005595 ORTHO05D006962 3.8e-44 181.8 144 67.4
Ciclev10016747m.g Citrus clementina HOM05D005595 ORTHO05D006962 3.8e-44 181.8 144 63.9
BcaNung05589 Brassica carinata HOM05D005595 ORTHO05D006962 6.5e-44 181.0 144 67.4
Migut.G01349 Erythranthe guttata HOM05D005595 ORTHO05D006962 6.5e-44 181.0 144 66.0
PSO063G5361 Papaver somniferum HOM05D005595 ORTHO05D006962 6.5e-44 181.0 144 64.6
CsaV3_6G042550 Cucumis sativus L. HOM05D005595 ORTHO05D006962 1.1e-43 180.3 144 63.2
AL3G10340 Arabidopsis lyrata HOM05D005595 ORTHO05D006962 1.4e-43 179.9 144 66.7
Thhalv10021543m.g Eutrema salsugineum HOM05D005595 ORTHO05D006962 1.4e-43 179.9 144 66.7
SEGI_22376 Sequoiadendron giganteum HOM05D005595 ORTHO05D006962 1.9e-43 179.5 144 64.6
TPR.G22469 Trifolium pratense HOM05D000829 ORTHO05D006962 1.9e-43 179.5 144 63.2
LjContig00102g0027903 Lotus japonicus HOM05D005595 ORTHO05D006962 2.5e-43 179.1 144 64.6
SalBow1G1604 Salvia bowleyana HOM05D005595 ORTHO05D006962 2.5e-43 179.1 144 63.9
ATR0723G078 Amborella trichopoda HOM05D005595 ORTHO05D006962 4.2e-43 178.3 144 64.6
FvH4_4g11850 Fragaria vesca HOM05D005595 ORTHO05D006962 5.5e-43 177.9 147 64.6
A03p32350 Brassica napus HOM05D005595 ORTHO05D006962 7.1e-43 177.6 144 66.0
C03p39400 Brassica napus HOM05D005595 ORTHO05D006962 7.1e-43 177.6 144 66.0
BraA03t12405Z Brassica rapa HOM05D005595 ORTHO05D006962 7.1e-43 177.6 144 66.0
SEGI_32901 Sequoiadendron giganteum HOM05D005595 ORTHO05D006962 7.1e-43 177.6 144 63.2
Zm00001eb365700 Zea mays HOM05D005595 ORTHO05D006962 7.1e-43 177.6 144 65.3
HPP92_011547 Vanilla planifolia HOM05D005595 ORTHO05D006962 1.2e-42 176.8 144 65.3
Os08g0162033 Oryza sativa ssp. japonica HOM05D005595 ORTHO05D006962 1.6e-42 176.4 144 63.9
Ah.09g228170 Amaranthus hybridus HOM05D005595 ORTHO05D006962 2.7e-42 175.6 144 64.6
MELO3C007496.2 Cucumis melo HOM05D005595 ORTHO05D006962 2.7e-42 175.6 151 60.9
MBI10_g24386_MAGBIO Magnolia biondii HOM05D005595 ORTHO05D006962 2.7e-42 175.6 144 64.6
THA.LOC104813780 Tarenaya hassleriana HOM05D005595 ORTHO05D006962 3.5e-42 175.3 144 64.6
Thecc.04G030300 Theobroma cacao HOM05D005595 ORTHO05D006962 1.0e-41 173.7 144 63.9
Sp3g00270 Schrenkiella parvula HOM05D005595 ORTHO05D006962 1.8e-41 172.9 144 63.2
CSS0048340 Camellia sinensis var. sinensis HOM05D005595 ORTHO05D006962 3.9e-41 171.8 172 55.8
Os05g0243300 Oryza sativa ssp. japonica HOM05D005595 ORTHO05D006962 3.9e-41 171.8 144 62.5
PSO782G0616 Papaver somniferum HOM05D005595 ORTHO05D006962 5.1e-41 171.4 144 62.5
CSS0001891 Camellia sinensis var. sinensis HOM05D005595 ORTHO05D006962 6.7e-41 171.0 147 63.9
CARHR075140 Cardamine hirsuta HOM05D005595 ORTHO05D006962 6.7e-41 171.0 144 63.9
Peaxi162Scf00318g00721 Petunia axillaris HOM05D005595 ORTHO05D006962 6.7e-41 171.0 144 63.2
SHI03897 Sapria himalayana HOM05D005595 ORTHO05D006962 1.5e-37 159.8 144 59.7
SalBow7G1090 Salvia bowleyana HOM05D005595 ORTHO05D006962 3.4e-37 158.7 144 59.7
Mapoly0030s0026 Marchantia polymorpha HOM05D005595 ORTHO05D006962 7.7e-37 157.5 144 57.6
AagrBONN_evm.TU.Sc2ySwM_344.3616 Anthoceros agrestis HOM05D005595 ORTHO05D006962 1.3e-36 156.8 144 59.0
SGA_v2.0_scaffold154G37161 Striga asiatica HOM05D005595 ORTHO05D006962 5.0e-36 154.8 205 46.8
Pp3c1_3220 Physcomitrium patens HOM05D005595 ORTHO05D006962 1.2e-34 150.2 144 53.5
FAN12G0306 Fragaria x ananassa HOM05D005595 ORTHO05D006962 1.6e-34 149.8 171 51.5
FAN09G4421 Fragaria x ananassa HOM05D005595 ORTHO05D006962 2.1e-34 149.4 144 56.2
CBR_g2974 Chara braunii HOM05D005595 ORTHO05D006962 5.7e-32 141.4 144 53.5
Sc18g0002160 Simmondsia chinensis HOM05D005595 ORTHO05D006962 1.0e-28 130.6 112 64.3
Zm00001eb144650 Zea mays HOM05D005595 ORTHO05D006962 2.9e-28 129.0 144 53.5
TAR629G0540 Trochodendron aralioides HOM05D005595 ORTHO05D006962 1.6e-26 123.2 67 88.1
BolC3t16209H Brassica oleracea HOM05D005595 ORTHO05D006962 2.1e-26 122.9 74 81.1
FAN12G0063 Fragaria x ananassa HOM05D005595 ORTHO05D006962 2.1e-26 122.9 197 41.1
unitig_0.g789 Utricularia gibba HOM05D005595 ORTHO05D006962 2.1e-26 122.9 86 69.8
SMO117G0155 Selaginella moellendorffii HOM05D005595 ORTHO05D006962 2.7e-26 122.5 146 43.8
SEGI_06133 Sequoiadendron giganteum HOM05D005595 ORTHO05D006962 2.7e-26 122.5 114 59.6
CiPaw.04G034600 Carya illinoinensis HOM05D005595 ORTHO05D006962 3.4e-21 105.5 104 58.7
FAN14G1531 Fragaria x ananassa HOM05D005595 ORTHO05D006962 3.2e-19 99.0 95 56.8
Cre09.g405200 Chlamydomonas reinhardtii HOM05D005595 ORTHO05D006962 1.2e-18 97.1 144 38.2
CDE05G0827 Ceratophyllum demersum HOM05D005595 ORTHO05D006962 3.0e-17 92.4 123 50.4
MCO07G681 Micromonas commoda HOM05D005595 ORTHO05D006962 4.4e-16 88.6 128 39.8
PRCOL_00005998 Prasinoderma coloniale HOM05D005595 ORTHO05D006962 2.2e-15 86.3 134 40.3
Sabra17G0059400 Salix brachista HOM05D005595 ORTHO05D006962 3.7e-15 85.5 143 37.1
Sabra17G0061400 Salix brachista HOM05D005595 ORTHO05D006962 3.7e-15 85.5 143 37.1
CDE05G2376 Ceratophyllum demersum HOM05D006709 ORTHO05D008329 2.1e-10 69.7 43 72.1
AagrBONN_evm.TU.Sc2ySwM_344.5504 Anthoceros agrestis HOM05D005595 ORTHO05D006962 4.7e-10 68.6 51 62.7
AagrBONN_evm.TU.Sc2ySwM_344.1421 Anthoceros agrestis HOM05D005595 ORTHO05D006962 3.0e-09 65.9 40 72.5
FAN14G1625 Fragaria x ananassa HOM05D000664 ORTHO05D000491 3.0e-09 65.9 35 80.0
Os05g0243100 Oryza sativa ssp. japonica HOM05D005595 ORTHO05D006962 3.0e-09 65.9 49 63.3
Aqoxy3G01736 Aquilegia oxysepala HOM05D005595 ORTHO05D001321 9.7e-08 60.8 40 67.5
Os05g0243200 Oryza sativa ssp. japonica HOM05D005595 ORTHO05D006962 1.7e-07 60.1 36 75.0
ClCG01G016260 Citrullus lanatus HOM05D005595 ORTHO05D006962 2.2e-07 59.7 32 75.0
SMO116G0167 Selaginella moellendorffii HOM05D002452 ORTHO05D006585 2.2e-07 59.7 130 30.8


User provided reference genes

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