Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0544951 Helianthus annuus HOM05D001820 ORTHO05D001794 5.1e-23 110.2 53 100.0
HanXRQChr06g0171531 Helianthus annuus HOM05D001820 ORTHO05D001794 4.0e-12 73.9 43 81.4
Lsat_1_v5_gn_3_35400 Lactuca sativa HOM05D001820 ORTHO05D001794 2.6e-11 71.2 43 76.7
ECA246G4817 Erigeron canadensis HOM05D001820 ORTHO05D001794 5.8e-11 70.1 43 76.7
Lj3A849G42 Lonicera japonica HOM05D001820 ORTHO05D001794 6.4e-10 66.6 43 76.7
Dinv11720 Davidia involucrata HOM05D001820 ORTHO05D001794 8.4e-10 66.2 43 76.7
Dinv17611 Davidia involucrata HOM05D001820 ORTHO05D001794 8.4e-10 66.2 43 76.7
BcaB07g29867 Brassica carinata HOM05D001820 ORTHO05D001794 2.4e-09 64.7 43 72.1
MELO3C024022.2 Cucumis melo HOM05D001820 ORTHO05D001794 2.4e-09 64.7 43 76.7
CsaV3_3G031400 Cucumis sativus L. HOM05D001820 ORTHO05D001794 2.4e-09 64.7 43 76.7
MSTRG.8083 Avicennia marina HOM05D001820 ORTHO05D001794 4.2e-09 63.9 43 72.1
BraA02t09058Z Brassica rapa HOM05D001820 ORTHO05D001794 5.5e-09 63.5 43 76.7
MSTRG.2060 Avicennia marina HOM05D001820 ORTHO05D001794 7.1e-09 63.2 43 72.1
A02p41150 Brassica napus HOM05D001820 ORTHO05D001794 7.1e-09 63.2 43 76.7
Solyc02g014130.3 Solanum lycopersicum HOM05D001820 ORTHO05D001794 7.1e-09 63.2 43 72.1
Sopen02g003620 Solanum pennellii HOM05D001820 ORTHO05D001794 7.1e-09 63.2 43 72.1
THA.LOC104800904 Tarenaya hassleriana HOM05D001820 ORTHO05D001794 7.1e-09 63.2 43 74.4
Migut.E00697 Erythranthe guttata HOM05D001820 ORTHO05D001794 9.3e-09 62.8 43 72.1
SGA_v2.0_scaffold88G27226 Striga asiatica HOM05D001820 ORTHO05D001794 9.3e-09 62.8 43 72.1
Nitab4.5_0006277g0010 Nicotiana tabacum HOM05D001820 ORTHO05D001794 1.2e-08 62.4 43 69.8
Manes.11G107600 Manihot esculenta HOM05D001820 ORTHO05D001794 1.6e-08 62.0 43 72.1
Nitab4.5_0000405g0070 Nicotiana tabacum HOM05D001820 ORTHO05D001794 1.6e-08 62.0 43 69.8
Oeu006357.1 Olea europaea HOM05D001820 ORTHO05D001794 1.6e-08 62.0 43 72.1
Phvul.011G029450 Phaseolus vulgaris HOM05D001820 ORTHO05D001794 1.6e-08 62.0 43 72.1
Actinidia04324 Actinidia chinensis HOM05D001820 ORTHO05D001794 2.1e-08 61.6 43 69.8
Sed0007297 Sechium edule HOM05D001820 ORTHO05D001794 2.1e-08 61.6 43 72.1
vmacro10892 Vaccinium macrocarpon HOM05D001820 ORTHO05D001794 2.1e-08 61.6 39 71.8
Actinidia04097 Actinidia chinensis HOM05D001820 ORTHO05D001794 2.7e-08 61.2 43 69.8
BolC2t12150H Brassica oleracea HOM05D001820 ORTHO05D001794 2.7e-08 61.2 43 74.4
ClCG10G011960 Citrullus lanatus HOM05D001820 ORTHO05D001794 2.7e-08 61.2 43 72.1
Glyma.11G100400 Glycine max HOM05D001820 ORTHO05D001794 2.7e-08 61.2 43 72.1
Glyma.12G026600 Glycine max HOM05D001820 ORTHO05D001794 2.7e-08 61.2 43 72.1
VMungo1127G0081 Vigna mungo HOM05D001820 ORTHO05D001794 2.7e-08 61.2 43 72.1
arahy.Tifrunner.gnm1.ann1.E1EB00 Arachis hypogaea HOM05D001820 ORTHO05D001794 3.5e-08 60.8 43 72.1
arahy.Tifrunner.gnm1.ann1.JGCN0U Arachis hypogaea HOM05D001820 ORTHO05D001794 3.5e-08 60.8 43 72.1
CSS0027730 Camellia sinensis var. sinensis HOM05D001820 ORTHO05D001794 3.5e-08 60.8 43 72.1
Dinv08397 Davidia involucrata HOM05D001820 ORTHO05D000006 3.5e-08 60.8 40 77.5
Peaxi162Scf00363g00323 Petunia axillaris HOM05D001820 ORTHO05D001794 3.5e-08 60.8 43 69.8
THA.LOC104820157 Tarenaya hassleriana HOM05D001820 ORTHO05D001794 3.5e-08 60.8 43 72.1
GSVIVG01012049001 Vitis vinifera HOM05D001820 ORTHO05D001794 3.5e-08 60.8 43 72.1
Manes.04G055100 Manihot esculenta HOM05D001820 ORTHO05D001794 4.6e-08 60.5 43 69.8
SalBow2G3453 Salvia bowleyana HOM05D001820 ORTHO05D001794 6.0e-08 60.1 43 67.4
Aqoxy3G04256 Aquilegia oxysepala HOM05D001820 ORTHO05D001794 7.9e-08 59.7 43 69.8
BcaC03g18037 Brassica carinata HOM05D001820 ORTHO05D001794 7.9e-08 59.7 39 79.5
C02p61010 Brassica napus HOM05D001820 ORTHO05D001794 7.9e-08 59.7 43 69.8
Thhalv10003519m.g Eutrema salsugineum HOM05D001820 ORTHO05D001794 7.9e-08 59.7 43 72.1
Rhsim09G0076600 Rhododendron simsii HOM05D001820 ORTHO05D001794 7.9e-08 59.7 38 76.3
AT5G23150 Arabidopsis thaliana HOM05D001820 ORTHO05D001794 1.0e-07 59.3 43 72.1
BcaC02g10341 Brassica carinata HOM05D001820 ORTHO05D001794 1.0e-07 59.3 43 65.1
C04p30140 Brassica napus HOM05D001820 ORTHO05D001794 1.0e-07 59.3 43 65.1
BolC4t24546H Brassica oleracea HOM05D001820 ORTHO05D001794 1.0e-07 59.3 43 65.1
CSS0050259 Camellia sinensis var. sinensis HOM05D001820 ORTHO05D001794 1.0e-07 59.3 43 69.8
Carub.0006s0711 Capsella rubella HOM05D001820 ORTHO05D001794 1.0e-07 59.3 43 69.8
CARHR190380 Cardamine hirsuta HOM05D001820 ORTHO05D001794 1.0e-07 59.3 43 72.1
Sp2g23970 Schrenkiella parvula HOM05D001820 ORTHO05D001794 1.0e-07 59.3 43 72.1
C07p44380 Brassica napus HOM05D001820 ORTHO05D001794 1.3e-07 58.9 43 72.1
BolC7t44959H Brassica oleracea HOM05D001820 ORTHO05D001794 1.3e-07 58.9 43 72.1
DCAR_023455 Daucus carota HOM05D001820 ORTHO05D001794 1.3e-07 58.9 43 69.8
MD13G1005600 Malus domestica HOM05D001820 ORTHO05D001794 1.3e-07 58.9 43 69.8
TAR371G1075 Trochodendron aralioides HOM05D001820 ORTHO05D001794 1.3e-07 58.9 43 69.8
Aa31LG11G2640 Aethionema arabicum HOM05D001820 ORTHO05D001794 1.8e-07 58.5 43 69.8
ATR0618G291 Amborella trichopoda HOM05D001820 ORTHO05D001794 1.8e-07 58.5 43 67.4
Carub.0006s2094 Capsella rubella HOM05D001820 ORTHO05D001794 1.8e-07 58.5 43 69.8
CAN.G157.27 Capsicum annuum HOM05D001820 ORTHO05D001794 2.3e-07 58.2 43 67.4
Lalb_Chr03g0024751 Lupinus albus HOM05D001820 ORTHO05D001794 2.3e-07 58.2 43 67.4
Atru.chr11.1123 Acer truncatum HOM05D001820 ORTHO05D001794 3.0e-07 57.8 43 69.8
AL6G34340 Arabidopsis lyrata HOM05D001820 ORTHO05D001794 3.0e-07 57.8 43 69.8
CDE05G2957 Ceratophyllum demersum HOM05D001820 ORTHO05D001794 3.0e-07 57.8 43 67.4
Lj6C718T7 Lonicera japonica HOM05D001820 ORTHO05D001794 3.0e-07 57.8 44 65.9
Prupe.1G347400 Prunus persica HOM05D001820 ORTHO05D001794 3.0e-07 57.8 43 67.4
TAR629G2509 Trochodendron aralioides HOM05D001820 ORTHO05D001794 3.0e-07 57.8 43 67.4
A03p46360 Brassica napus HOM05D001820 ORTHO05D001794 3.9e-07 57.4 43 69.8
BraA03t13762Z Brassica rapa HOM05D001820 ORTHO05D001794 3.9e-07 57.4 43 69.8
Nn3g18657 Nelumbo nucifera HOM05D001820 ORTHO05D001794 3.9e-07 57.4 43 72.1
Ah.01g001530 Amaranthus hybridus HOM05D001820 ORTHO05D001794 5.1e-07 57.0 43 65.1
Lj3g0021068 Lotus japonicus HOM05D001820 ORTHO05D001794 5.1e-07 57.0 43 67.4
Medtr1g037460 Medicago truncatula HOM05D001820 ORTHO05D001794 5.1e-07 57.0 43 69.8
Oeu026901.1 Olea europaea HOM05D001820 ORTHO05D001794 5.1e-07 57.0 43 65.1
AL6G18620 Arabidopsis lyrata HOM05D001820 ORTHO05D001794 6.7e-07 56.6 43 69.8
AT5G08230 Arabidopsis thaliana HOM05D001820 ORTHO05D001794 6.7e-07 56.6 43 67.4
Cfa008741 Carpinus fangiana HOM05D001820 ORTHO05D001794 6.7e-07 56.6 43 60.5
Ca_19019_v3 Cicer arietinum L. HOM05D001820 ORTHO05D001794 6.7e-07 56.6 43 67.4
Ciclev10030571m.g Citrus clementina HOM05D001820 ORTHO05D001794 8.7e-07 56.2 43 65.1
Nn4g24951 Nelumbo nucifera HOM05D001820 ORTHO05D001794 8.7e-07 56.2 43 72.1
TPR.G8242 Trifolium pratense HOM05D001820 ORTHO05D001794 1.1e-06 55.8 43 67.4
CARHR204950 Cardamine hirsuta HOM05D001820 ORTHO05D001794 1.5e-06 55.5 43 67.4
Cpa.g.sc0.142 Carica papaya HOM05D001820 ORTHO05D001794 1.5e-06 55.5 43 58.1
MD16G1002500 Malus domestica HOM05D001820 ORTHO05D001794 1.5e-06 55.5 43 65.1
QL06p002024 Quercus lobata HOM05D001820 ORTHO05D001794 1.5e-06 55.5 44 63.6
Sc10g0006930 Simmondsia chinensis HOM05D001820 ORTHO05D001794 1.5e-06 55.5 43 65.1
EL10Ac9g22949 Beta vulgaris HOM05D001820 ORTHO05D001794 1.9e-06 55.1 43 65.1
TPR.G32351 Trifolium pratense HOM05D001820 ORTHO05D001794 1.9e-06 55.1 43 65.1
Haze_11757 Corylus avellana HOM05D001820 ORTHO05D001794 2.5e-06 54.7 43 60.5
Medtr4g075060 Medicago truncatula HOM05D001820 ORTHO05D001794 2.5e-06 54.7 43 65.1
SHI31079 Sapria himalayana HOM05D001820 ORTHO05D001794 2.5e-06 54.7 38 71.1
Ah.15g091710 Amaranthus hybridus HOM05D001820 ORTHO05D001794 3.3e-06 54.3 46 60.9
BcaB08g37274 Brassica carinata HOM05D001820 ORTHO05D005803 3.3e-06 54.3 38 68.4
A04p00310 Brassica napus HOM05D001820 ORTHO05D001794 3.3e-06 54.3 46 60.9
A10p28460 Brassica napus HOM05D001820 ORTHO05D001794 3.3e-06 54.3 38 68.4
C09p68730 Brassica napus HOM05D001820 ORTHO05D001794 3.3e-06 54.3 38 68.4
BolC9t59620H Brassica oleracea HOM05D001820 ORTHO05D001794 3.3e-06 54.3 38 68.4
BraA04t15750Z Brassica rapa HOM05D001820 ORTHO05D001794 3.3e-06 54.3 46 60.9
BraA10t44894Z Brassica rapa HOM05D001820 ORTHO05D001794 3.3e-06 54.3 38 68.4
CDE05G2339 Ceratophyllum demersum HOM05D001820 ORTHO05D001794 4.3e-06 53.9 43 62.8
AUR62015236 Chenopodium quinoa HOM05D001820 ORTHO05D001794 4.3e-06 53.9 43 62.8
DCAR_026899 Daucus carota HOM05D001820 ORTHO05D001794 4.3e-06 53.9 43 67.4
Oeu028420.2 Olea europaea HOM05D001820 ORTHO05D001794 4.3e-06 53.9 43 60.5
Sp6g34730 Schrenkiella parvula HOM05D001820 ORTHO05D001794 4.3e-06 53.9 43 62.8
AL5G45890 Arabidopsis lyrata HOM05D001820 ORTHO05D001794 5.6e-06 53.5 48 58.3
BcaB02g07301 Brassica carinata HOM05D001820 ORTHO05D001794 5.6e-06 53.5 44 61.4
TWI59G1249 Tripterygium wilfordii HOM05D001820 ORTHO05D001794 5.6e-06 53.5 43 58.1
BcaC08g45258 Brassica carinata HOM05D001820 ORTHO05D001794 7.4e-06 53.1 42 64.3
BcaC08g45270 Brassica carinata HOM05D001820 ORTHO05D001794 7.4e-06 53.1 42 64.3
A07p26200 Brassica napus HOM05D001820 ORTHO05D001794 7.4e-06 53.1 42 64.3
C06p28580 Brassica napus HOM05D001820 ORTHO05D001794 7.4e-06 53.1 42 64.3
BolC6t38025H Brassica oleracea HOM05D001820 ORTHO05D001794 7.4e-06 53.1 42 64.3
BraA07t30265Z Brassica rapa HOM05D001820 ORTHO05D001794 7.4e-06 53.1 42 64.3
MBI06_g16014_MAGBIO Magnolia biondii HOM05D001820 ORTHO05D001794 7.4e-06 53.1 43 65.1
Cc11_g02320 Coffea canephora HOM05D001820 ORTHO05D001794 9.6e-06 52.8 56 55.4
Gohir.A09G205550 Gossypium hirsutum HOM05D001820 ORTHO05D001794 9.6e-06 52.8 43 67.4
Gorai.006G222800 Gossypium raimondii HOM05D001820 ORTHO05D001794 9.6e-06 52.8 43 67.4
Psat6g099360 Pisum sativum HOM05D001820 ORTHO05D001794 9.6e-06 52.8 43 65.1
SHI15472 Sapria himalayana HOM05D001820 ORTHO05D001794 9.6e-06 52.8 43 67.4


User provided reference genes

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