Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0540651 Helianthus annuus HOM05D004594 ORTHO05D005225 0.0e+00 1921.7 1295 100.0
Lsat_1_v5_gn_3_33900 Lactuca sativa HOM05D004594 ORTHO05D005225 1.2e-298 1030.4 1195 61.7
ECA246G2651 Erigeron canadensis HOM05D004594 ORTHO05D005225 3.5e-282 975.7 1395 54.1
ECA233G5935 Erigeron canadensis HOM05D004594 ORTHO05D005225 2.8e-247 859.8 1384 49.4
Dinv02961 Davidia involucrata HOM05D004594 ORTHO05D005225 1.8e-246 857.1 1409 48.6
HanXRQChr14g0429131 Helianthus annuus HOM05D004594 ORTHO05D005225 8.9e-238 828.2 1303 55.9
Actinidia11790 Actinidia chinensis HOM05D004594 ORTHO05D005225 1.8e-217 760.8 1471 46.7
Ciclev10030522m.g Citrus clementina HOM05D004594 ORTHO05D005225 8.7e-217 758.4 1419 42.8
HanXRQChr08g0224741 Helianthus annuus HOM05D004594 ORTHO05D005225 4.5e-213 746.1 1324 48.4
Cfa008959 Carpinus fangiana HOM05D004594 ORTHO05D005225 1.6e-210 737.6 1391 47.2
FAN07G2218 Fragaria x ananassa HOM05D004594 ORTHO05D005225 1.6e-210 737.6 1370 47.4
QL03p068116 Quercus lobata HOM05D004594 ORTHO05D005225 2.7e-210 736.9 1375 45.1
FAN22G0563 Fragaria x ananassa HOM05D004594 ORTHO05D005225 6.0e-210 735.7 1370 48.0
FvH4_4g31060 Fragaria vesca HOM05D004594 ORTHO05D005225 1.3e-209 734.6 1376 46.7
RcHm_v2.0_Chr4g0439441 Rosa chinensis HOM05D004594 ORTHO05D005225 1.1e-208 731.5 1383 46.9
FAN17G1193 Fragaria x ananassa HOM05D004594 ORTHO05D005225 3.7e-207 726.5 1377 47.0
Manes.05G104800 Manihot esculenta HOM05D004594 ORTHO05D005225 3.1e-206 723.4 1408 47.4
FAN12G0764 Fragaria x ananassa HOM05D004594 ORTHO05D005225 1.6e-202 711.1 1398 46.4
DCAR_013185 Daucus carota HOM05D004594 ORTHO05D005225 6.0e-202 709.1 1426 44.5
Manes.01G034200 Manihot esculenta HOM05D004594 ORTHO05D005225 2.2e-199 700.7 1400 44.3
CiPaw.05G132100 Carya illinoinensis HOM05D004594 ORTHO05D005225 4.8e-199 699.5 1276 45.8
CiPaw.06G087400 Carya illinoinensis HOM05D004594 ORTHO05D005225 1.2e-197 694.9 1351 42.8
GSVIVG01019950001 Vitis vinifera HOM05D004594 ORTHO05D005225 1.2e-197 694.9 1391 46.7
Haze_11988 Corylus avellana HOM05D004594 ORTHO05D005225 3.4e-197 693.3 1478 43.4
Duzib248G1210 Durio zibethinus HOM05D004594 ORTHO05D005225 4.5e-197 693.0 1385 43.6
CANSAT64G0453 Cannabis sativa HOM05D004594 ORTHO05D005225 1.3e-196 691.4 1365 44.6
Phvul.003G045700 Phaseolus vulgaris HOM05D004594 ORTHO05D005225 2.9e-196 690.3 1409 44.0
EL10Ac3g06731 Beta vulgaris HOM05D004594 ORTHO05D005225 4.2e-195 686.4 1405 43.8
Hund25219 Selenicereus undatus HOM05D004594 ORTHO05D005225 1.0e-193 681.8 1389 45.2
Rhsim09G0077000 Rhododendron simsii HOM05D004594 ORTHO05D005225 2.3e-193 680.6 1310 44.4
MD16G1069300 Malus domestica HOM05D004594 ORTHO05D005225 6.7e-193 679.1 1377 43.4
TWI79G0308 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 6.7e-193 679.1 1419 42.0
Sopen04g003850 Solanum pennellii HOM05D004594 ORTHO05D005225 8.8e-193 678.7 1413 40.7
Lsat_1_v5_gn_8_32581 Lactuca sativa HOM05D004594 ORTHO05D005225 1.5e-192 677.9 1314 41.4
Potri.010G166100 Populus trichocarpa HOM05D004594 ORTHO05D005225 6.9e-190 669.1 1425 43.7
CAN.G194.5 Capsicum annuum HOM05D004594 ORTHO05D005225 2.0e-189 667.5 1345 42.1
Thecc.02G342500 Theobroma cacao HOM05D004594 ORTHO05D005225 1.0e-188 665.2 1380 44.1
CsaV3_5G025180 Cucumis sativus L. HOM05D004594 ORTHO05D005225 2.2e-188 664.1 1439 42.8
Cc00_g08470 Coffea canephora HOM05D004594 ORTHO05D005225 6.5e-188 662.5 1439 39.7
Ca_04825_v3 Cicer arietinum L. HOM05D004594 ORTHO05D005225 8.5e-188 662.1 1430 42.9
Glyma.02G109900 Glycine max HOM05D004594 ORTHO05D005225 1.1e-187 661.8 1432 44.8
Glyma.01G051400 Glycine max HOM05D004594 ORTHO05D005225 1.4e-187 661.4 1384 44.7
VMungo1215G3128 Vigna mungo HOM05D004594 ORTHO05D005225 1.6e-186 657.9 1425 43.7
AUR62035898 Chenopodium quinoa HOM05D004594 ORTHO05D005225 2.1e-186 657.5 1381 40.2
ClCG09G021930 Citrullus lanatus HOM05D004594 ORTHO05D005225 1.0e-185 655.2 1458 42.5
TWI75G1472 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 3.0e-185 653.7 1450 39.9
Eucgr.G02485 Eucalyptus grandis HOM05D004594 ORTHO05D005225 7.4e-184 649.0 1436 39.8
Sed0022637 Sechium edule HOM05D004594 ORTHO05D005225 2.8e-183 647.1 1383 44.0
Migut.E00588 Erythranthe guttata HOM05D004594 ORTHO05D005225 7.0e-182 642.5 1419 41.4
Psat2g116320 Pisum sativum HOM05D004594 ORTHO05D005225 1.2e-181 641.7 1427 42.6
Lj2g0016635 Lotus japonicus HOM05D004594 ORTHO05D005225 3.5e-181 640.2 1214 43.5
Sc11g0002090 Simmondsia chinensis HOM05D004594 ORTHO05D005225 6.5e-180 636.0 1192 48.6
MELO3C002967.2 Cucumis melo HOM05D004594 ORTHO05D005225 8.5e-180 635.6 1417 42.6
Nitab4.5_0000129g0280 Nicotiana tabacum HOM05D004594 ORTHO05D005225 1.6e-178 631.3 1266 42.9
Gorai.012G186600 Gossypium raimondii HOM05D004594 ORTHO05D005225 2.7e-178 630.6 1408 42.3
TPR.G34709 Trifolium pratense HOM05D004594 ORTHO05D005225 4.7e-178 629.8 1439 44.8
Gohir.D04G191200 Gossypium hirsutum HOM05D004594 ORTHO05D005225 1.0e-177 628.6 1406 42.2
Peaxi162Scf00329g00617 Petunia axillaris HOM05D004594 ORTHO05D005225 6.7e-177 625.9 1335 44.2
AUR62035342 Chenopodium quinoa HOM05D004594 ORTHO05D005225 1.7e-175 621.3 1343 40.2
Solyc04g008680.4 Solanum lycopersicum HOM05D004594 ORTHO05D005225 1.2e-173 615.1 1311 41.5
Prupe.1G277900 Prunus persica HOM05D004594 ORTHO05D005225 3.5e-173 613.6 1395 43.7
SGA_v2.0_scaffold140G35452 Striga asiatica HOM05D004594 ORTHO05D005225 1.3e-172 611.7 1409 41.3
Nn1g04524 Nelumbo nucifera HOM05D004594 ORTHO05D005225 2.9e-172 610.5 1405 40.8
Sabra10G0126400 Salix brachista HOM05D004594 ORTHO05D005225 5.0e-172 609.8 1450 42.6
TAR371G0293 Trochodendron aralioides HOM05D004594 ORTHO05D005225 6.5e-172 609.4 1368 40.9
Nitab4.5_0001419g0070 Nicotiana tabacum HOM05D004594 ORTHO05D005225 9.4e-171 605.5 1334 41.0
Lalb_Chr10g0098431 Lupinus albus HOM05D004594 ORTHO05D005225 1.0e-169 602.1 1449 40.1
Atru.chr11.1750 Acer truncatum HOM05D004594 ORTHO05D005225 1.5e-168 598.2 718 55.8
PSO832G1080 Papaver somniferum HOM05D004594 ORTHO05D005225 2.6e-168 597.4 1401 39.8
arahy.Tifrunner.gnm1.ann1.8R27D6 Arachis hypogaea HOM05D004594 ORTHO05D005225 2.8e-167 594.0 1461 40.0
CARHR145490 Cardamine hirsuta HOM05D004594 ORTHO05D005225 6.3e-167 592.8 1395 41.5
Carub.0005s0198 Capsella rubella HOM05D004594 ORTHO05D005225 5.3e-166 589.7 1380 42.0
PSO013G0146 Papaver somniferum HOM05D004594 ORTHO05D005225 8.5e-164 582.4 1385 40.5
Aa31LG2G7300 Aethionema arabicum HOM05D004594 ORTHO05D005225 6.8e-161 572.8 1421 42.0
PGR119G1944 Punica granatum HOM05D004594 ORTHO05D005225 8.8e-161 572.4 1364 42.2
Oeu044046.4 Olea europaea HOM05D004594 ORTHO05D005225 3.4e-160 570.5 1026 44.9
Ah.13g075020 Amaranthus hybridus HOM05D004594 ORTHO05D005225 1.3e-159 568.5 1383 39.7
THA.LOC104824075 Tarenaya hassleriana HOM05D004594 ORTHO05D005225 2.8e-159 567.4 1141 44.6
Aqoxy3G03454 Aquilegia oxysepala HOM05D004594 ORTHO05D005225 4.8e-159 566.6 1381 42.3
BcaB07g30683 Brassica carinata HOM05D004594 ORTHO05D005225 1.0e-156 558.9 1362 41.9
Sp2g14100 Schrenkiella parvula HOM05D004594 ORTHO05D005225 8.6e-156 555.8 1418 41.6
C09p31000 Brassica napus HOM05D004594 ORTHO05D005225 1.1e-155 555.4 1355 42.9
BcaC04g21505 Brassica carinata HOM05D004594 ORTHO05D005225 2.8e-154 550.8 1356 42.8
Medtr5g042000 Medicago truncatula HOM05D004594 ORTHO05D005225 3.6e-154 550.4 1490 39.3
TAR629G1990 Trochodendron aralioides HOM05D004594 ORTHO05D005225 6.1e-154 549.7 1211 42.8
AL5G12800 Arabidopsis lyrata HOM05D004594 ORTHO05D005225 1.2e-152 545.4 1378 42.5
A09p24110 Brassica napus HOM05D004594 ORTHO05D005225 3.4e-152 543.9 1350 42.9
BraA09t38011Z Brassica rapa HOM05D004594 ORTHO05D005225 3.4e-152 543.9 1350 42.9
BolC9t55959H Brassica oleracea HOM05D004594 ORTHO05D005225 3.7e-151 540.4 1362 43.5
AT2G03150 Arabidopsis thaliana HOM05D004594 ORTHO05D005225 2.4e-150 537.7 1206 39.6
Thhalv10005550m.g Eutrema salsugineum HOM05D004594 ORTHO05D005225 1.2e-144 518.8 1367 43.2
arahy.Tifrunner.gnm1.ann1.KB2NSX Arachis hypogaea HOM05D004594 ORTHO05D005225 1.4e-142 511.9 1580 36.9
Cpa.g.sc25.130 Carica papaya HOM05D004594 ORTHO05D005225 3.2e-142 510.8 1381 38.9
HanXRQChr08g0225211 Helianthus annuus HOM05D004594 ORTHO05D005225 3.0e-140 504.2 1245 40.6
MBI06_g33529_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 3.0e-132 477.6 767 45.6
CDE07G1889 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 9.9e-128 462.6 1322 34.9
ATR0564G229 Amborella trichopoda HOM05D004594 ORTHO05D005225 2.3e-116 424.9 1413 36.7
SHI24774 Sapria himalayana HOM05D004594 ORTHO05D005225 1.5e-112 412.1 1160 31.0
Gohir.A04G146601 Gossypium hirsutum HOM05D004594 ORTHO05D005225 9.9e-112 409.5 580 53.4
unitig_52.g17301 Utricularia gibba HOM05D004594 ORTHO05D005225 8.4e-111 406.4 750 43.1
HPP92_001998 Vanilla planifolia HOM05D004594 ORTHO05D005225 3.2e-110 404.4 1237 34.9
Zm00001eb384230 Zea mays HOM05D004594 ORTHO05D005225 9.3e-110 402.9 1400 32.9
Zm00001eb277410 Zea mays HOM05D004594 ORTHO05D005225 2.1e-106 391.7 1149 37.5
CDE04G0114 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 6.2e-106 390.2 1280 33.0
C02p51140 Brassica napus HOM05D004594 ORTHO05D005225 4.0e-97 360.9 585 42.7
Gohir.1Z049516 Gossypium hirsutum HOM05D004594 ORTHO05D005225 6.2e-90 337.0 288 58.3
SEGI_16638 Sequoiadendron giganteum HOM05D004594 ORTHO05D005225 5.1e-68 264.2 1325 35.3
Pp3c4_10880 Physcomitrium patens HOM05D004594 ORTHO05D005225 3.5e-56 224.9 453 40.4
SMO172G0003 Selaginella moellendorffii HOM05D004594 ORTHO05D005225 2.9e-55 221.9 293 43.3
AagrBONN_evm.TU.Sc2ySwM_340.1878 Anthoceros agrestis HOM05D004594 ORTHO05D005225 9.4e-54 216.9 413 39.2
CBR_g5747 Chara braunii HOM05D004594 ORTHO05D005225 1.6e-53 216.1 271 41.0
Pp3c12_12730 Physcomitrium patens HOM05D004594 ORTHO05D005225 8.0e-53 213.8 1364 26.0
Mapoly0102s0024 Marchantia polymorpha HOM05D004594 ORTHO05D005225 2.8e-50 205.3 1168 27.7
Lj3E852T1 Lonicera japonica HOM05D004594 ORTHO05D005225 2.3e-44 185.7 107 79.4
vmacro10769 Vaccinium macrocarpon HOM05D004594 ORTHO05D005225 2.3e-39 169.1 751 34.8
Atru.chr11.1748 Acer truncatum HOM05D004594 ORTHO05D005225 2.4e-33 149.1 288 52.1
Os06g0562700 Oryza sativa ssp. japonica HOM05D004594 ORTHO05D005225 7.8e-32 144.1 337 34.7
Rhsim04G0150600 Rhododendron simsii HOM05D004594 ORTHO05D005225 1.3e-31 143.3 171 47.4
Oeu032954.1 Olea europaea HOM05D004594 ORTHO05D005225 1.6e-29 136.3 92 68.5
Lj3E852G2 Lonicera japonica HOM05D004594 ORTHO05D005225 1.4e-28 133.3 207 52.7
Oeu034639.1 Olea europaea HOM05D004594 ORTHO05D005225 2.3e-28 132.5 157 52.2
Lsat_1_v5_gn_3_92661 Lactuca sativa HOM05D004594 ORTHO05D005225 6.6e-23 114.4 98 56.1
unitig_52.g17300 Utricularia gibba HOM05D004594 ORTHO05D005225 2.8e-21 109.0 332 37.7
Lsat_1_v5_gn_4_108040 Lactuca sativa HOM05D004594 ORTHO05D005225 8.1e-21 107.5 65 70.8
Lsat_1_v5_gn_1_53021 Lactuca sativa HOM05D004594 ORTHO05D005225 1.6e-16 93.2 62 66.1
BolC2t11204H Brassica oleracea HOM05D004594 ORTHO05D005225 3.3e-14 85.5 59 59.3
MBI02_g24139_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 1.2e-13 83.6 69 60.9
A02p33260 Brassica napus HOM05D004594 ORTHO05D005225 5.2e-12 78.2 50 66.0
Cre06.g283634 Chlamydomonas reinhardtii HOM05D004594 ORTHO05D005225 5.2e-12 78.2 307 22.8
BcaC03g17185 Brassica carinata HOM05D004594 ORTHO05D005225 5.8e-11 74.7 297 31.0
QL03p068420 Quercus lobata HOM05D004594 ORTHO05D005225 5.8e-11 74.7 246 30.5
Lsat_1_v5_gn_5_11101 Lactuca sativa HOM05D000912 ORTHO05D001232 7.6e-11 74.3 54 74.1
Lsat_1_v5_gn_2_95100 Lactuca sativa HOM05D005290 ORTHO05D006040 2.2e-10 72.8 75 58.7
Lsat_1_v5_gn_4_138780 Lactuca sativa HOM05D067107 ORTHO05D005225 6.4e-10 71.2 54 72.2
Actinidia04099 Actinidia chinensis HOM05D004594 ORTHO05D005225 1.9e-09 69.7 363 28.9
MBI05_g14664_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 3.2e-09 68.9 50 64.0
Lsat_1_v5_gn_3_136820 Lactuca sativa HOM05D067107 ORTHO05D005225 2.1e-08 66.2 50 72.0
A02p33250 Brassica napus HOM05D004594 ORTHO05D005225 1.7e-07 63.2 79 45.6


User provided reference genes

Program Settings