Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 0.0e+00 1763.4 853 100.0
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 0.0e+00 1559.3 852 88.3
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 0.0e+00 1511.1 853 84.6
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 0.0e+00 1239.2 886 67.6
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 0.0e+00 1230.3 851 69.2
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1195.6 854 68.1
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 0.0e+00 1194.9 858 67.0
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1194.5 854 68.0
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 0.0e+00 1191.0 852 67.3
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 0.0e+00 1190.3 889 65.7
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 0.0e+00 1187.2 857 66.7
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 0.0e+00 1186.8 850 66.8
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 0.0e+00 1178.3 853 66.5
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 0.0e+00 1177.2 856 66.1
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1174.8 852 66.2
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 0.0e+00 1173.3 857 65.9
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1173.3 852 66.1
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 0.0e+00 1172.9 859 65.9
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 0.0e+00 1172.9 855 66.0
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 0.0e+00 1170.6 849 64.8
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1169.8 854 65.7
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 0.0e+00 1168.7 855 65.8
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 0.0e+00 1166.8 860 66.7
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1164.1 857 65.6
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1164.1 855 65.1
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 0.0e+00 1162.5 852 66.2
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 0.0e+00 1162.1 855 65.6
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 0.0e+00 1161.7 855 65.3
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 0.0e+00 1161.4 828 67.9
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 0.0e+00 1159.1 814 68.4
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 0.0e+00 1155.6 850 64.7
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 0.0e+00 1154.4 857 64.6
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1154.0 853 65.7
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1153.7 855 65.0
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1152.1 851 64.9
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 0.0e+00 1151.7 814 67.4
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 0.0e+00 1151.3 851 65.0
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1150.2 851 64.4
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1148.7 857 64.6
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 0.0e+00 1148.3 851 64.5
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1147.1 861 62.8
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 0.0e+00 1146.7 861 64.1
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 0.0e+00 1145.6 853 63.4
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1143.6 856 63.9
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1142.1 845 65.2
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1142.1 848 63.2
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 0.0e+00 1141.7 772 69.4
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 0.0e+00 1139.8 976 59.5
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1139.8 849 63.8
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 0.0e+00 1137.1 848 63.4
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1135.2 861 62.5
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1133.2 853 63.4
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1131.7 858 65.0
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1130.5 855 63.2
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 0.0e+00 1130.5 861 63.5
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 0.0e+00 1128.6 859 62.6
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1128.2 870 61.6
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1126.7 849 63.0
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1124.4 815 67.4
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 0.0e+00 1122.8 854 63.2
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 0.0e+00 1121.7 769 67.4
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 0.0e+00 1121.7 855 64.1
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1119.0 820 65.4
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 0.0e+00 1117.4 856 62.1
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1117.1 855 62.8
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1115.9 853 62.6
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1115.5 848 62.5
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1114.4 849 62.4
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 0.0e+00 1109.7 860 62.1
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 0.0e+00 1106.7 830 64.1
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 0.0e+00 1105.1 851 61.9
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 0.0e+00 1102.0 860 62.7
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 0.0e+00 1095.9 772 66.8
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1091.6 774 65.2
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 0.0e+00 1089.7 857 61.5
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 0.0e+00 1087.4 853 61.0
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 0.0e+00 1083.2 855 60.6
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 0.0e+00 1082.4 873 60.5
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 0.0e+00 1077.4 856 60.7
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 0.0e+00 1076.2 856 61.0
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1075.5 856 61.7
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 5.8e-312 1073.9 858 60.5
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 5.8e-312 1073.5 858 61.1
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 2.9e-311 1071.6 728 69.6
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 1.2e-310 1069.7 887 59.5
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 1.3e-309 1066.2 853 61.2
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 6.4e-309 1063.9 858 61.7
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 1.4e-308 1062.8 890 59.7
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 3.2e-308 1061.6 850 59.8
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 9.5e-305 1050.0 871 59.1
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 6.2e-304 1047.3 720 68.1
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 6.8e-303 1043.9 860 59.5
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 4.4e-302 1041.2 818 59.7
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 4.6e-299 1031.2 752 63.3
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 7.8e-299 1030.4 836 59.6
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 5.1e-298 1027.7 785 61.4
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 2.9e-293 1011.9 770 61.8
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 4.9e-293 1011.1 879 56.3
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 1.1e-292 1010.0 857 56.6
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 1.9e-292 1009.2 776 61.5
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 4.1e-292 1008.1 795 59.6
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 1.0e-290 1003.4 770 64.8
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 2.5e-289 998.8 846 57.0
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 3.6e-288 995.0 777 60.4
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 2.4e-287 992.3 822 58.3
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 6.9e-287 990.7 778 60.5
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 1.2e-286 989.9 775 59.6
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 9.9e-286 986.9 779 59.9
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 9.9e-286 986.9 860 58.1
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 4.6e-283 978.0 813 57.9
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 5.1e-282 974.5 781 59.7
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 1.6e-280 969.5 848 55.7
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 1.1e-276 956.8 861 56.3
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 3.5e-275 951.8 909 53.4
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 5.6e-273 944.5 824 56.3
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 7.9e-267 924.1 748 59.2
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 3.9e-258 895.2 802 55.5
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 2.4e-247 859.4 649 64.1
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 1.9e-244 849.7 816 51.8
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 3.3e-241 839.0 797 52.7
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 5.7e-241 838.2 771 53.4
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 4.8e-240 835.1 808 50.7
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 6.1e-235 818.1 825 49.5
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 4.2e-228 795.4 792 50.4
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 1.7e-221 773.5 600 63.8
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 8.3e-216 754.6 629 59.0
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 1.2e-214 750.7 773 49.4
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 7.5e-209 731.5 660 57.6
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 6.6e-197 691.8 474 68.1
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 1.9e-196 690.3 694 49.4
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 4.3e-196 689.1 434 73.3
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 4.0e-186 656.0 438 68.3
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 6.6e-181 638.6 585 54.7
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 7.8e-174 615.1 666 50.0
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 1.9e-172 610.5 428 66.6
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 7.3e-172 608.6 472 61.7
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 1.6e-171 607.4 504 57.7
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 2.0e-169 600.5 913 38.6
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 6.5e-152 542.3 578 50.7
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 3.2e-127 460.3 322 66.5
Glyma.08G103167 Glycine max HOM05D004097 ORTHO05D005352 9.7e-124 448.7 404 54.7
Nitab4.5_0002174g0020 Nicotiana tabacum HOM05D004097 ORTHO05D005352 1.0e-120 438.7 334 62.6
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 2.2e-120 437.6 780 36.5
Cpa.g.sc1279.1 Carica papaya HOM05D004097 ORTHO05D005352 1.6e-118 431.4 434 52.1
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 3.9e-117 426.8 272 73.2
MD16G1117300 Malus domestica HOM05D004097 ORTHO05D005352 6.3e-99 366.3 334 54.2
Prupe.1G228900 Prunus persica HOM05D004097 ORTHO05D005352 7.0e-98 362.8 341 52.8
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 2.7e-97 360.9 427 44.0
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 5.2e-93 346.7 247 68.8
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 1.4e-82 312.0 529 34.4
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 9.2e-82 309.3 828 30.9
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 4.3e-63 247.3 203 61.6
Nitab4.5_0005179g0020 Nicotiana tabacum HOM05D004097 ORTHO05D036916 8.9e-61 239.6 203 57.6
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 8.1e-54 216.5 138 71.0
Ca_18056_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.2e-52 212.6 167 58.1
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 1.7e-48 198.7 97 89.7
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 1.3e-43 182.6 100 81.0
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 2.6e-36 158.3 195 44.6
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 1.5e-31 142.5 82 78.0
PSO724G1248 Papaver somniferum HOM05D004097 ORTHO05D005352 1.6e-30 139.0 154 42.2
CAN.G49.22 Capsicum annuum HOM05D004097 ORTHO05D043419 8.7e-24 116.7 86 64.0
Actinidia15018 Actinidia chinensis HOM05D004097 ORTHO05D054282 2.6e-20 105.1 81 64.2
Psat3g154560 Pisum sativum HOM05D001399 ORTHO05D001670 1.7e-19 102.4 84 57.1
Cpa.g.sc43.15 Carica papaya HOM05D004097 ORTHO05D043419 5.0e-19 100.9 69 63.8
Solyc05g015250.2 Solanum lycopersicum HOM05D004097 ORTHO05D036916 2.7e-17 95.1 123 47.2
Actinidia15016 Actinidia chinensis HOM05D004097 ORTHO05D005352 1.8e-16 92.4 60 70.0
Peaxi162Scf00128g01139 Petunia axillaris HOM05D004097 ORTHO05D036916 2.0e-15 89.0 70 61.4
Actinidia15017 Actinidia chinensis HOM05D004097 ORTHO05D055553 5.7e-15 87.4 96 52.1
Sabra10G0046700 Salix brachista HOM05D004097 ORTHO05D005352 2.4e-13 82.0 46 76.1
Psat7g044200 Pisum sativum HOM05D003089 ORTHO05D003544 2.6e-12 78.6 57 63.2
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 1.7e-11 75.9 40 77.5
MBI03_g17125_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 2.2e-11 75.5 44 79.5
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 2.9e-11 75.1 41 78.0
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 4.2e-10 71.2 97 41.2
TPR.G36369 Trifolium pratense HOM05D004097 ORTHO05D001670 4.2e-10 71.2 62 59.7
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 5.5e-10 70.9 96 41.7


User provided reference genes

Program Settings