Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0538231 Helianthus annuus HOM05D006814 ORTHO05D008613 1.2e-177 626.3 304 100.0
HanXRQChr17g0538211 Helianthus annuus HOM05D006814 ORTHO05D008613 6.0e-177 624.0 304 99.7
Lsat_1_v5_gn_3_19041 Lactuca sativa HOM05D006814 ORTHO05D008613 1.4e-162 576.2 305 92.1
ECA246G4850 Erigeron canadensis HOM05D006814 ORTHO05D008613 5.1e-160 567.8 318 88.1
Peaxi162Scf00170g01111 Petunia axillaris HOM05D006814 ORTHO05D008613 1.1e-151 540.0 305 85.2
Nitab4.5_0000685g0010 Nicotiana tabacum HOM05D006814 ORTHO05D008613 5.7e-151 537.7 305 85.2
PGSC0003DMG400014801 Solanum tuberosum HOM05D006814 ORTHO05D008613 6.3e-150 534.3 305 85.2
Hma1.2p1_0586F.1_g183880 Hydrangea macrophylla HOM05D006814 ORTHO05D008613 8.2e-150 533.9 305 84.9
CSS0047525 Camellia sinensis var. sinensis HOM05D006814 ORTHO05D008613 3.1e-149 531.9 305 84.3
Solyc08g076610.4 Solanum lycopersicum HOM05D006814 ORTHO05D008613 9.0e-149 530.4 305 84.6
CiPaw.11G096600 Carya illinoinensis HOM05D006814 ORTHO05D008613 1.2e-148 530.0 303 83.8
Sabra01G0108000 Salix brachista HOM05D006814 ORTHO05D008613 3.4e-148 528.5 303 82.5
Sopen08g025160 Solanum pennellii HOM05D006814 ORTHO05D008613 5.9e-148 527.7 305 84.3
CiPaw.11G097800 Carya illinoinensis HOM05D006814 ORTHO05D008613 7.7e-148 527.3 303 83.5
Thecc.03G307100 Theobroma cacao HOM05D006814 ORTHO05D008613 1.0e-147 526.9 305 83.0
Potri.001G139100 Populus trichocarpa HOM05D006814 ORTHO05D008613 1.3e-147 526.6 303 82.2
Actinidia03355 Actinidia chinensis HOM05D006814 ORTHO05D008613 3.8e-147 525.0 305 83.3
FAN04G0609 Fragaria x ananassa HOM05D006814 ORTHO05D008613 1.4e-146 523.1 306 81.7
FAN08G0276 Fragaria x ananassa HOM05D006814 ORTHO05D008613 1.4e-146 523.1 306 81.7
Cfa012484 Carpinus fangiana HOM05D006814 ORTHO05D008613 1.9e-146 522.7 303 82.8
Rhsim11G0018900 Rhododendron simsii HOM05D006814 ORTHO05D008613 1.9e-146 522.7 305 82.6
CAN.G298.54 Capsicum annuum HOM05D006814 ORTHO05D008613 3.2e-146 521.9 306 83.0
FAN18G2202 Fragaria x ananassa HOM05D006814 ORTHO05D008613 9.4e-146 520.4 306 81.0
Gohir.A08G154800 Gossypium hirsutum HOM05D006814 ORTHO05D008613 9.4e-146 520.4 298 83.9
TAR629G1931 Trochodendron aralioides HOM05D006814 ORTHO05D008613 1.6e-145 519.6 305 82.0
FvH4_5g22650 Fragaria vesca HOM05D006814 ORTHO05D008613 2.1e-145 519.2 306 80.7
RcHm_v2.0_Chr7g0211071 Rosa chinensis HOM05D006814 ORTHO05D008613 3.6e-145 518.5 301 81.7
FAN18G0582 Fragaria x ananassa HOM05D006814 ORTHO05D008613 4.6e-145 518.1 306 80.7
Lj8A305G45 Lonicera japonica HOM05D006814 ORTHO05D008613 6.1e-145 517.7 306 84.3
Ciclev10032236m.g Citrus clementina HOM05D006814 ORTHO05D008613 7.9e-145 517.3 299 82.3
Gohir.D08G175300 Gossypium hirsutum HOM05D006814 ORTHO05D008613 7.9e-145 517.3 298 83.6
PGR031G2224 Punica granatum HOM05D006814 ORTHO05D008613 1.8e-144 516.2 301 80.7
Cc08_g03190 Coffea canephora HOM05D006814 ORTHO05D008613 3.9e-144 515.0 305 80.7
Duzib205G0392 Durio zibethinus HOM05D006814 ORTHO05D008613 3.9e-144 515.0 295 83.7
DCAR_032083 Daucus carota HOM05D006814 ORTHO05D008613 6.7e-144 514.2 303 81.8
Gorai.004G183200 Gossypium raimondii HOM05D006814 ORTHO05D008613 6.7e-144 514.2 298 83.2
Hund14354 Selenicereus undatus HOM05D006814 ORTHO05D008613 8.8e-144 513.8 300 80.3
CsaV3_4G012030 Cucumis sativus L. HOM05D006814 ORTHO05D008613 1.5e-143 513.1 300 81.0
MELO3C008839.2 Cucumis melo HOM05D006814 ORTHO05D008613 2.5e-143 512.3 300 80.7
GSVIVG01013112001 Vitis vinifera HOM05D006814 ORTHO05D008613 3.3e-143 511.9 295 82.7
MD11G1183600 Malus domestica HOM05D006814 ORTHO05D008613 7.4e-143 510.8 301 80.1
Manes.02G107600 Manihot esculenta HOM05D006814 ORTHO05D008613 7.4e-143 510.8 298 81.2
Nn1g02991 Nelumbo nucifera HOM05D006814 ORTHO05D008613 1.4e-141 506.5 305 81.0
vmacro00308 Vaccinium macrocarpon HOM05D006814 ORTHO05D008613 1.4e-141 506.5 324 76.9
Aqoxy4G00304 Aquilegia oxysepala HOM05D006814 ORTHO05D008613 1.8e-141 506.1 305 79.0
Cpa.g.sc87.105 Carica papaya HOM05D006814 ORTHO05D008613 5.3e-141 504.6 305 80.3
Atru.chr6.1626 Acer truncatum HOM05D006814 ORTHO05D008613 6.9e-141 504.2 303 80.2
CANSAT21G0682 Cannabis sativa HOM05D006814 ORTHO05D008613 6.9e-141 504.2 296 79.4
AUR62007326 Chenopodium quinoa HOM05D006814 ORTHO05D008613 1.5e-140 503.1 290 82.1
TWI60G0232 Tripterygium wilfordii HOM05D006814 ORTHO05D008613 1.5e-140 503.1 299 79.3
ClCG04G005520 Citrullus lanatus HOM05D006814 ORTHO05D008613 5.9e-140 501.1 317 77.3
MSTRG.24841 Avicennia marina HOM05D006814 ORTHO05D008613 5.0e-139 498.0 302 78.1
Oeu005300.2 Olea europaea HOM05D006814 ORTHO05D008613 1.6e-137 493.0 353 69.7
PSO063G6077 Papaver somniferum HOM05D006814 ORTHO05D008613 1.6e-137 493.0 300 77.7
Sc07g0008590 Simmondsia chinensis HOM05D006814 ORTHO05D008613 6.1e-137 491.1 301 79.1
COL.COLO4_16971 Corchorus olitorius HOM05D006814 ORTHO05D008613 1.4e-136 490.0 277 85.6
Migut.A01081 Erythranthe guttata HOM05D006814 ORTHO05D008613 3.0e-136 488.8 303 77.6
AUR62018677 Chenopodium quinoa HOM05D006814 ORTHO05D008613 7.4e-135 484.2 295 78.3
Carub.0007s2360 Capsella rubella HOM05D006814 ORTHO05D008613 1.8e-133 479.6 294 76.5
QL12p004459 Quercus lobata HOM05D006814 ORTHO05D008613 1.8e-133 479.6 325 73.2
Aa31LG6G500 Aethionema arabicum HOM05D006814 ORTHO05D008613 5.3e-133 478.0 294 76.5
THA.LOC104798334 Tarenaya hassleriana HOM05D006814 ORTHO05D008613 7.0e-133 477.6 294 77.9
Thhalv10025847m.g Eutrema salsugineum HOM05D006814 ORTHO05D008613 4.5e-132 474.9 298 75.2
arahy.Tifrunner.gnm1.ann1.DD0PLV Arachis hypogaea HOM05D006814 ORTHO05D008613 5.9e-132 474.6 303 71.9
Ca_26271_v3 Cicer arietinum L. HOM05D006814 ORTHO05D008613 7.7e-132 474.2 296 74.3
Lj3g0020867 Lotus japonicus HOM05D006814 ORTHO05D008613 1.3e-131 473.4 293 75.4
AL7G36810 Arabidopsis lyrata HOM05D006814 ORTHO05D008613 2.2e-131 472.6 294 75.2
BcaNung04035 Brassica carinata HOM05D006814 ORTHO05D008613 2.2e-131 472.6 294 76.2
Medtr8g447310 Medicago truncatula HOM05D006814 ORTHO05D008613 2.2e-131 472.6 296 74.7
A03p50690 Brassica napus HOM05D006814 ORTHO05D008613 3.8e-131 471.9 294 76.2
TPR.G8183 Trifolium pratense HOM05D006814 ORTHO05D008613 6.5e-131 471.1 294 75.2
arahy.Tifrunner.gnm1.ann1.S7AV19 Arachis hypogaea HOM05D006814 ORTHO05D008613 8.5e-131 470.7 303 71.0
CARHR224480 Cardamine hirsuta HOM05D006814 ORTHO05D008613 8.5e-131 470.7 294 75.2
BcaC06g33591 Brassica carinata HOM05D006814 ORTHO05D008613 1.1e-130 470.3 294 75.9
BolC7t45420H Brassica oleracea HOM05D006814 ORTHO05D008613 1.1e-130 470.3 294 75.9
BraA03t14161Z Brassica rapa HOM05D006814 ORTHO05D008613 1.1e-130 470.3 294 75.9
SGA_v2.0_scaffold36G14306 Striga asiatica HOM05D006814 ORTHO05D008613 4.2e-130 468.4 336 70.2
EL10Ac5g12048 Beta vulgaris HOM05D006814 ORTHO05D008613 5.5e-130 468.0 298 76.8
Sp7g16350 Schrenkiella parvula HOM05D006814 ORTHO05D008613 1.2e-129 466.8 294 75.2
VMungo0251G2608 Vigna mungo HOM05D006814 ORTHO05D008613 1.6e-129 466.5 297 74.7
Glyma.20G095300 Glycine max HOM05D006814 ORTHO05D008613 5.2e-128 461.5 297 74.7
Psat4g131760 Pisum sativum HOM05D006814 ORTHO05D008613 2.0e-127 459.5 296 73.0
CDE11G0551 Ceratophyllum demersum HOM05D006814 ORTHO05D008613 5.7e-127 458.0 298 72.1
C07p49120 Brassica napus HOM05D006814 ORTHO05D008613 1.7e-126 456.4 319 69.9
Aa31LG9G8590 Aethionema arabicum HOM05D006814 ORTHO05D008613 2.4e-125 452.6 294 72.8
Lalb_Chr05g0228761 Lupinus albus HOM05D006814 ORTHO05D008613 3.1e-125 452.2 292 72.9
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 4.1e-125 451.8 298 74.2
Prupe.4G270400 Prunus persica HOM05D006814 ORTHO05D008613 9.1e-125 450.7 262 81.3
Os06g0132600 Oryza sativa ssp. japonica HOM05D006814 ORTHO05D008613 2.5e-122 442.6 266 77.1
Zm00001eb269700 Zea mays HOM05D006814 ORTHO05D008613 3.6e-121 438.7 303 68.6
Haze_08181 Corylus avellana HOM05D006814 ORTHO05D008613 2.6e-119 432.6 301 73.1
ATR0772G225 Amborella trichopoda HOM05D006814 ORTHO05D008613 1.7e-118 429.9 290 70.0
SEGI_31198 Sequoiadendron giganteum HOM05D006814 ORTHO05D008613 3.8e-115 418.7 298 67.1
Sed0016076 Sechium edule HOM05D006814 ORTHO05D008613 1.6e-105 386.7 221 80.5
Pp3c10_20230 Physcomitrium patens HOM05D006814 ORTHO05D008613 2.6e-103 379.4 288 60.4
Dinv28983 Davidia involucrata HOM05D006814 ORTHO05D008613 1.4e-101 373.6 206 85.9
AagrBONN_evm.TU.Sc2ySwM_228.215 Anthoceros agrestis HOM05D006814 ORTHO05D008613 5.9e-100 368.2 283 62.2
Mapoly0097s0033 Marchantia polymorpha HOM05D006814 ORTHO05D008613 1.2e-95 354.0 292 61.0
Eucgr.D02215 Eucalyptus grandis HOM05D006814 ORTHO05D008613 4.9e-94 348.6 200 78.5
SMO358G0599 Selaginella moellendorffii HOM05D006814 ORTHO05D008613 4.9e-94 348.6 284 60.2
Phvul.003G283200 Phaseolus vulgaris HOM05D006814 ORTHO05D008613 1.1e-85 320.9 199 74.9
Nitab4.5_0025014g0010 Nicotiana tabacum HOM05D006814 ORTHO05D008613 1.1e-77 294.3 167 83.2
AT4G17760 Arabidopsis thaliana HOM05D006814 ORTHO05D008613 9.6e-74 281.2 183 73.2
CBR_g3124 Chara braunii HOM05D006814 ORTHO05D008613 1.4e-69 267.3 263 50.6
SalBow6G3153 Salvia bowleyana HOM05D006814 ORTHO05D008613 2.6e-63 246.5 147 81.0
GSVIVG01003310001 Vitis vinifera HOM05D006814 ORTHO05D008613 9.3e-61 238.0 149 73.2
DCAR_021700 Daucus carota HOM05D006814 ORTHO05D013862 1.3e-57 227.6 210 59.0
Hma1.2p1_0572F.1_g181150 Hydrangea macrophylla HOM05D006814 ORTHO05D008613 5.1e-51 205.7 142 76.1
CAN.G298.53 Capsicum annuum HOM05D006814 ORTHO05D008613 2.4e-40 170.2 117 75.2
CAN.G298.50 Capsicum annuum HOM05D006814 ORTHO05D008613 2.2e-38 163.7 108 77.8
Hma1.2p1_0586F.1_g183890 Hydrangea macrophylla HOM05D006814 ORTHO05D008613 4.5e-31 139.4 118 61.9
CAN.G2435.1 Capsicum annuum HOM05D006814 ORTHO05D008613 3.2e-29 133.3 91 75.8
Actinidia25984 Actinidia chinensis HOM05D006814 ORTHO05D008613 2.7e-28 130.2 77 85.7
Actinidia25985 Actinidia chinensis HOM05D006814 ORTHO05D008613 6.1e-28 129.0 72 86.1
Cre03.g162250 Chlamydomonas reinhardtii HOM05D006814 ORTHO05D008613 6.1e-28 129.0 296 29.4
Glyma.10G145666 Glycine max HOM05D006814 ORTHO05D008613 1.2e-23 114.8 73 71.2
PRCOL_00006064 Prasinoderma coloniale HOM05D006814 ORTHO05D008613 1.2e-23 114.8 331 27.2
MCO03G144 Micromonas commoda HOM05D006814 ORTHO05D008613 2.2e-22 110.5 301 24.9
EL10As1g23070 Beta vulgaris HOM05D006814 ORTHO05D088401 2.2e-09 67.4 41 75.6


User provided reference genes

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