Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0533231 Helianthus annuus HOM05D007428 ORTHO05D009308 1.9e-30 135.2 67 100.0
ECA246G0502 Erigeron canadensis HOM05D007428 ORTHO05D009308 1.2e-16 89.4 52 88.5
Lsat_1_v5_gn_3_8800 Lactuca sativa HOM05D007428 ORTHO05D009308 2.2e-15 85.1 56 75.0
Nn6g32110 Nelumbo nucifera HOM05D007428 ORTHO05D009308 5.1e-12 73.9 56 69.6
Actinidia10608 Actinidia chinensis HOM05D007428 ORTHO05D009308 1.1e-11 72.8 59 66.1
Dinv38899 Davidia involucrata HOM05D007428 ORTHO05D009308 2.5e-11 71.6 59 69.5
MBI11_g02029_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 7.4e-11 70.1 56 67.9
ATR0661G028 Amborella trichopoda HOM05D007428 ORTHO05D009308 2.1e-10 68.6 65 58.5
Manes.02G017900 Manihot esculenta HOM05D007428 ORTHO05D009308 2.1e-10 68.6 58 62.1
TAR374G0673 Trochodendron aralioides HOM05D007428 ORTHO05D009308 2.8e-10 68.2 56 64.3
GSVIVG01019416001 Vitis vinifera HOM05D007428 ORTHO05D009308 3.7e-10 67.8 44 75.0
vmacro11409 Vaccinium macrocarpon HOM05D007428 ORTHO05D009308 1.1e-09 66.2 65 58.5
Phvul.001G130100 Phaseolus vulgaris HOM05D007428 ORTHO05D009308 1.4e-09 65.9 58 58.6
Nn1g01671 Nelumbo nucifera HOM05D007428 ORTHO05D009308 2.4e-09 65.1 56 60.7
Rhsim02G0235600 Rhododendron simsii HOM05D007428 ORTHO05D009308 2.4e-09 65.1 61 60.7
Gohir.D03G078400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 3.1e-09 64.7 44 70.5
Gorai.003G085700 Gossypium raimondii HOM05D007428 ORTHO05D009308 3.1e-09 64.7 44 70.5
QL12p031804 Quercus lobata HOM05D007428 ORTHO05D009308 4.0e-09 64.3 62 58.1
PSO782G0783 Papaver somniferum HOM05D007428 ORTHO05D009308 5.3e-09 63.9 57 61.4
THA.LOC104809367 Tarenaya hassleriana HOM05D007428 ORTHO05D009308 5.3e-09 63.9 61 57.4
DCAR_005573 Daucus carota HOM05D007428 ORTHO05D009308 9.0e-09 63.2 46 69.6
Lalb_Chr25g0287261 Lupinus albus HOM05D007428 ORTHO05D009308 1.2e-08 62.8 58 60.3
Aa31LG9G500 Aethionema arabicum HOM05D007428 ORTHO05D009308 1.5e-08 62.4 61 57.4
CDE04G2716 Ceratophyllum demersum HOM05D007428 ORTHO05D009308 1.5e-08 62.4 56 62.5
Eucgr.D01813 Eucalyptus grandis HOM05D007428 ORTHO05D009308 1.5e-08 62.4 51 58.8
TAR375G0610 Trochodendron aralioides HOM05D007428 ORTHO05D009308 1.5e-08 62.4 53 58.5
COL.COLO4_08363 Corchorus olitorius HOM05D007428 ORTHO05D009308 2.0e-08 62.0 44 68.2
Duzib205G1701 Durio zibethinus HOM05D007428 ORTHO05D009308 2.6e-08 61.6 44 68.2
Peaxi162Scf00102g01635 Petunia axillaris HOM05D007428 ORTHO05D009308 2.6e-08 61.6 51 66.7
EL10Ac4g10178 Beta vulgaris HOM05D007428 ORTHO05D009308 3.4e-08 61.2 61 50.8
Ciclev10023047m.g Citrus clementina HOM05D007428 ORTHO05D009308 3.4e-08 61.2 44 68.2
Potri.001G099200 Populus trichocarpa HOM05D007428 ORTHO05D009308 4.5e-08 60.8 58 56.9
Glyma.19G137300 Glycine max HOM05D007428 ORTHO05D009308 5.8e-08 60.5 58 53.4
MD06G1090900 Malus domestica HOM05D007428 ORTHO05D009308 5.8e-08 60.5 61 54.1
MD14G1111700 Malus domestica HOM05D007428 ORTHO05D009308 7.6e-08 60.1 49 61.2
PGSC0003DMG400005826 Solanum tuberosum HOM05D007428 ORTHO05D009308 7.6e-08 60.1 51 64.7
Os03g0125700 Oryza sativa ssp. japonica HOM05D007428 ORTHO05D009308 1.0e-07 59.7 42 64.3
Sabra01G0074400 Salix brachista HOM05D007428 ORTHO05D009308 1.0e-07 59.7 56 57.1
HPP92_003464 Vanilla planifolia HOM05D007428 ORTHO05D009308 1.3e-07 59.3 52 55.8
CAN.G792.73 Capsicum annuum HOM05D003118 ORTHO05D009308 1.7e-07 58.9 44 70.5
CARHR287610 Cardamine hirsuta HOM05D007428 ORTHO05D009308 1.7e-07 58.9 61 54.1
CiPaw.11G129900 Carya illinoinensis HOM05D007428 ORTHO05D009308 1.7e-07 58.9 59 59.3
TPR.G18241 Trifolium pratense HOM05D007428 ORTHO05D009308 2.2e-07 58.5 58 55.2
PGR031G0112 Punica granatum HOM05D007428 ORTHO05D009308 2.9e-07 58.2 58 53.4
Solyc08g008120.4 Solanum lycopersicum HOM05D007428 ORTHO05D009308 2.9e-07 58.2 51 62.7
Sopen08g003980 Solanum pennellii HOM05D007428 ORTHO05D009308 2.9e-07 58.2 51 62.7
Ah.06g194380 Amaranthus hybridus HOM05D007428 ORTHO05D009308 3.8e-07 57.8 66 56.1
AL7G47840 Arabidopsis lyrata HOM05D007428 ORTHO05D009308 3.8e-07 57.8 61 52.5
AT5G41560 Arabidopsis thaliana HOM05D007428 ORTHO05D009308 3.8e-07 57.8 61 52.5
Carub.0007s3391 Capsella rubella HOM05D007428 ORTHO05D009308 3.8e-07 57.8 61 52.5
AUR62000169 Chenopodium quinoa HOM05D007428 ORTHO05D009308 3.8e-07 57.8 65 52.3
AUR62039842 Chenopodium quinoa HOM05D007428 ORTHO05D009308 3.8e-07 57.8 65 52.3
DCAR_008355 Daucus carota HOM05D001458 ORTHO05D008462 3.8e-07 57.8 46 69.6
Medtr7g091260 Medicago truncatula HOM05D007428 ORTHO05D009308 3.8e-07 57.8 44 65.9
CANSAT21G2180 Cannabis sativa HOM05D007428 ORTHO05D009308 4.9e-07 57.4 63 54.0
Cfa012244 Carpinus fangiana HOM05D007428 ORTHO05D009308 6.5e-07 57.0 60 56.7
Glyma.03G134700 Glycine max HOM05D007428 ORTHO05D009308 6.5e-07 57.0 66 48.5
Hma1.2p1_0216F.1_g091060 Hydrangea macrophylla HOM05D007428 ORTHO05D009308 8.4e-07 56.6 63 57.1
Duzib084G1020 Durio zibethinus HOM05D007428 ORTHO05D009308 1.1e-06 56.2 58 55.2
Lj1g0002351 Lotus japonicus HOM05D007428 ORTHO05D009308 1.1e-06 56.2 44 61.4
PSO478G2995 Papaver somniferum HOM05D007428 ORTHO05D009308 1.1e-06 56.2 49 59.2
Atru.chr9.2117 Acer truncatum HOM05D007428 ORTHO05D009308 1.4e-06 55.8 56 57.1
Thhalv10028001m.g Eutrema salsugineum HOM05D007428 ORTHO05D009308 1.4e-06 55.8 56 55.4
Gohir.D08G134500 Gossypium hirsutum HOM05D001458 ORTHO05D008462 1.4e-06 55.8 44 63.6
Sp7g00480 Schrenkiella parvula HOM05D007428 ORTHO05D009308 1.4e-06 55.8 61 52.5
CSS0042206 Camellia sinensis var. sinensis HOM05D007428 ORTHO05D009308 1.9e-06 55.5 61 59.0
BcaC02g08952 Brassica carinata HOM05D007428 ORTHO05D009308 2.5e-06 55.1 62 48.4
C04p48540 Brassica napus HOM05D007428 ORTHO05D009308 2.5e-06 55.1 62 48.4
BolC4t26447H Brassica oleracea HOM05D007428 ORTHO05D009308 2.5e-06 55.1 62 48.4
HPP92_001758 Vanilla planifolia HOM05D007428 ORTHO05D009308 2.5e-06 55.1 53 54.7
Aqoxy7G00179 Aquilegia oxysepala HOM05D007428 ORTHO05D009308 4.2e-06 54.3 55 49.1
Gohir.A08G114300 Gossypium hirsutum HOM05D007428 ORTHO05D009308 4.2e-06 54.3 44 63.6
Zm00001eb001890 Zea mays HOM05D007428 ORTHO05D009308 4.2e-06 54.3 46 58.7
BcaB06g27627 Brassica carinata HOM05D007428 ORTHO05D009308 7.1e-06 53.5 58 50.0
A04p14670 Brassica napus HOM05D007428 ORTHO05D009308 7.1e-06 53.5 58 50.0
BraA04t17107Z Brassica rapa HOM05D007428 ORTHO05D009308 7.1e-06 53.5 58 50.0
arahy.Tifrunner.gnm1.ann1.I9CJRL Arachis hypogaea HOM05D007428 ORTHO05D009308 9.3e-06 53.1 42 61.9
Cfa012240 Carpinus fangiana HOM05D007428 ORTHO05D009308 9.3e-06 53.1 58 53.4


User provided reference genes

Program Settings