Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0526411 Helianthus annuus HOM05D001068 ORTHO05D013681 9.9e-74 280.0 142 100.0
HanXRQChr16g0526381 Helianthus annuus HOM05D001068 ORTHO05D002190 1.6e-63 246.1 136 92.6
ECA234G0082 Erigeron canadensis HOM05D001068 ORTHO05D002190 4.6e-55 218.0 120 89.2
ECA236G4578 Erigeron canadensis HOM05D001068 ORTHO05D002190 7.9e-55 217.2 121 86.8
Lsat_1_v5_gn_4_28520 Lactuca sativa HOM05D001068 ORTHO05D002190 7.9e-55 217.2 120 87.5
ECA234G1381 Erigeron canadensis HOM05D001068 ORTHO05D002190 2.3e-54 215.7 120 87.5
HanXRQChr17g0565261 Helianthus annuus HOM05D001068 ORTHO05D002190 2.3e-54 215.7 120 87.5
HanXRQChr17g0565241 Helianthus annuus HOM05D001068 ORTHO05D002190 6.7e-54 214.2 120 85.8
Potri.019G092600 Populus trichocarpa HOM05D001068 ORTHO05D002190 4.2e-48 194.9 120 78.3
CiPaw.03G183200 Carya illinoinensis HOM05D001068 ORTHO05D002190 2.1e-47 192.6 120 75.0
Cfa014679 Carpinus fangiana HOM05D001068 ORTHO05D002190 2.7e-47 192.2 120 77.5
Haze_13278 Corylus avellana HOM05D001068 ORTHO05D002190 1.4e-46 189.9 120 75.8
Lj8A106G57 Lonicera japonica HOM05D001068 ORTHO05D002190 1.4e-46 189.9 120 75.0
Sabra19G0105800 Salix brachista HOM05D001068 ORTHO05D002190 1.8e-46 189.5 120 75.8
Potri.013G123500 Populus trichocarpa HOM05D001068 ORTHO05D002190 6.7e-46 187.6 120 75.8
PGR142G0739 Punica granatum HOM05D001068 ORTHO05D002190 2.6e-45 185.7 120 71.7
CANSAT64G0075 Cannabis sativa HOM05D001068 ORTHO05D002190 3.3e-45 185.3 119 73.9
Ciclev10014502m.g Citrus clementina HOM05D001068 ORTHO05D002190 5.7e-45 184.5 120 72.5
Sabra13G0102500 Salix brachista HOM05D001068 ORTHO05D002190 5.7e-45 184.5 119 74.8
Nitab4.5_0002196g0050 Nicotiana tabacum HOM05D001068 ORTHO05D002190 7.4e-45 184.1 119 71.4
Solyc10g008110.4 Solanum lycopersicum HOM05D001068 ORTHO05D002190 9.7e-45 183.7 119 73.1
Eucgr.K01080 Eucalyptus grandis HOM05D001068 ORTHO05D002190 1.3e-44 183.3 120 74.2
Actinidia10988 Actinidia chinensis HOM05D001068 ORTHO05D002190 2.2e-44 182.6 120 72.5
CAN.G782.15 Capsicum annuum HOM05D001068 ORTHO05D002190 2.2e-44 182.6 119 71.4
RcHm_v2.0_Chr2g0128641 Rosa chinensis HOM05D001068 ORTHO05D002190 2.2e-44 182.6 123 69.9
Sopen10g003980 Solanum pennellii HOM05D001068 ORTHO05D002190 2.8e-44 182.2 119 71.4
PGSC0003DMG400010548 Solanum tuberosum HOM05D001068 ORTHO05D002190 2.8e-44 182.2 119 72.3
EL10Ac9g20848 Beta vulgaris HOM05D001068 ORTHO05D002190 3.7e-44 181.8 120 70.8
Manes.12G092800 Manihot esculenta HOM05D001068 ORTHO05D002190 3.7e-44 181.8 120 71.7
Phvul.011G116000 Phaseolus vulgaris HOM05D001068 ORTHO05D002190 4.8e-44 181.4 119 69.7
arahy.Tifrunner.gnm1.ann1.JX5WJ5 Arachis hypogaea HOM05D001068 ORTHO05D002190 1.8e-43 179.5 119 70.6
MD17G1234100 Malus domestica HOM05D001068 ORTHO05D002190 1.8e-43 179.5 123 69.1
Ah.01g003900 Amaranthus hybridus HOM05D001068 ORTHO05D002190 2.4e-43 179.1 120 70.0
C05p04620 Brassica napus HOM05D001068 ORTHO05D002190 2.4e-43 179.1 120 71.7
FAN14G5876 Fragaria x ananassa HOM05D001068 ORTHO05D002190 3.1e-43 178.7 120 70.0
TWI59G1279 Tripterygium wilfordii HOM05D001068 ORTHO05D002190 3.1e-43 178.7 120 70.0
arahy.Tifrunner.gnm1.ann1.C7HVNL Arachis hypogaea HOM05D001068 ORTHO05D002190 4.1e-43 178.3 119 69.7
Glyma.12G120300 Glycine max HOM05D001068 ORTHO05D002190 4.1e-43 178.3 119 68.1
MBI07_g06445_MAGBIO Magnolia biondii HOM05D001068 ORTHO05D002190 4.1e-43 178.3 120 71.7
Rhsim06G0135500 Rhododendron simsii HOM05D001068 ORTHO05D002190 4.1e-43 178.3 120 69.2
GSVIVG01020650001 Vitis vinifera HOM05D001068 ORTHO05D002190 4.1e-43 178.3 120 72.5
BcaB02g06807 Brassica carinata HOM05D001068 ORTHO05D002190 5.3e-43 177.9 120 70.8
BolC5t29234H Brassica oleracea HOM05D001068 ORTHO05D002190 5.3e-43 177.9 120 70.8
CSS0049947 Camellia sinensis var. sinensis HOM05D001068 ORTHO05D002190 5.3e-43 177.9 120 70.0
FAN05G5054 Fragaria x ananassa HOM05D001068 ORTHO05D002190 5.3e-43 177.9 120 70.8
BcaC05g24277 Brassica carinata HOM05D001068 ORTHO05D002190 1.2e-42 176.8 120 70.8
CSS0000404 Camellia sinensis var. sinensis HOM05D001068 ORTHO05D002190 1.2e-42 176.8 120 69.2
AUR62036085 Chenopodium quinoa HOM05D001068 ORTHO05D002190 1.2e-42 176.8 120 69.2
Glyma.06G285400 Glycine max HOM05D001068 ORTHO05D002190 1.2e-42 176.8 119 67.2
Duzib248G0800 Durio zibethinus HOM05D001068 ORTHO05D002190 1.5e-42 176.4 120 69.2
Prupe.3G127000 Prunus persica HOM05D001068 ORTHO05D002190 1.5e-42 176.4 120 70.0
Medtr4g079290 Medicago truncatula HOM05D001068 ORTHO05D002190 2.0e-42 176.0 119 67.2
TPR.G34856 Trifolium pratense HOM05D001068 ORTHO05D002190 2.0e-42 176.0 118 68.6
VMungo1127G1678 Vigna mungo HOM05D001068 ORTHO05D002190 2.0e-42 176.0 113 71.7
A10p05020 Brassica napus HOM05D001068 ORTHO05D002190 2.6e-42 175.6 120 69.2
BraA10t42768Z Brassica rapa HOM05D001068 ORTHO05D002190 2.6e-42 175.6 120 69.2
Cc05_g07930 Coffea canephora HOM05D001068 ORTHO05D002190 2.6e-42 175.6 120 67.5
Thecc.02G188700 Theobroma cacao HOM05D001068 ORTHO05D002190 2.6e-42 175.6 120 69.2
Gohir.A12G139700 Gossypium hirsutum HOM05D001068 ORTHO05D002190 3.4e-42 175.3 119 69.7
Hma1.2p1_0002F.1_g002410 Hydrangea macrophylla HOM05D001068 ORTHO05D002190 3.4e-42 175.3 120 68.3
vmacro12355 Vaccinium macrocarpon HOM05D001068 ORTHO05D002190 3.4e-42 175.3 120 68.3
Lj3g0024792 Lotus japonicus HOM05D001068 ORTHO05D002190 5.9e-42 174.5 122 65.6
Nn1g04278 Nelumbo nucifera HOM05D001068 ORTHO05D002190 5.9e-42 174.5 120 68.3
Gohir.D01G018400 Gossypium hirsutum HOM05D001068 ORTHO05D002190 7.7e-42 174.1 120 69.2
Gorai.002G020600 Gossypium raimondii HOM05D001068 ORTHO05D002190 7.7e-42 174.1 120 69.2
Peaxi162Scf00241g01211 Petunia axillaris HOM05D001068 ORTHO05D002190 7.7e-42 174.1 112 71.4
AUR62036084 Chenopodium quinoa HOM05D001068 ORTHO05D002190 1.0e-41 173.7 113 72.6
Gohir.A01G019800 Gossypium hirsutum HOM05D001068 ORTHO05D002190 1.0e-41 173.7 120 69.2
Duzib052G0179 Durio zibethinus HOM05D001068 ORTHO05D002190 1.3e-41 173.3 120 67.5
Thhalv10009440m.g Eutrema salsugineum HOM05D001068 ORTHO05D002190 1.7e-41 172.9 120 68.3
AUR62035387 Chenopodium quinoa HOM05D001068 ORTHO05D002190 2.9e-41 172.2 113 71.7
DCAR_010695 Daucus carota HOM05D001068 ORTHO05D002190 2.9e-41 172.2 122 66.4
AL1G16310 Arabidopsis lyrata HOM05D001068 ORTHO05D002190 3.8e-41 171.8 120 67.5
CsaV3_2G034560 Cucumis sativus L. HOM05D001068 ORTHO05D002190 3.8e-41 171.8 128 62.5
Gorai.005G198300 Gossypium raimondii HOM05D001068 ORTHO05D002190 3.8e-41 171.8 120 68.3
Sp1g05100 Schrenkiella parvula HOM05D001068 ORTHO05D002190 3.8e-41 171.8 120 68.3
Sed0001164 Sechium edule HOM05D001068 ORTHO05D002190 3.8e-41 171.8 119 66.4
Sed0007318 Sechium edule HOM05D001068 ORTHO05D002190 3.8e-41 171.8 119 66.4
COL.COLO4_04707 Corchorus olitorius HOM05D001068 ORTHO05D002190 5.0e-41 171.4 120 68.3
Gohir.D12G144200 Gossypium hirsutum HOM05D001068 ORTHO05D002190 5.0e-41 171.4 119 68.1
Gorai.008G155500 Gossypium raimondii HOM05D001068 ORTHO05D002190 5.0e-41 171.4 119 68.1
Carub.0001s0566 Capsella rubella HOM05D001068 ORTHO05D002190 6.5e-41 171.0 117 68.4
Gohir.D02G176600 Gossypium hirsutum HOM05D001068 ORTHO05D002190 6.5e-41 171.0 120 68.3
Hund00993 Selenicereus undatus HOM05D001068 ORTHO05D002190 8.5e-41 170.6 119 68.1
AT1G06290 Arabidopsis thaliana HOM05D001068 ORTHO05D002190 1.1e-40 170.2 120 66.7
ClCG02G010170 Citrullus lanatus HOM05D001068 ORTHO05D002190 1.9e-40 169.5 135 60.0
Thhalv10006988m.g Eutrema salsugineum HOM05D001068 ORTHO05D002190 2.5e-40 169.1 117 69.2
TAR627G0187 Trochodendron aralioides HOM05D001068 ORTHO05D002190 2.5e-40 169.1 120 67.5
CARHR005870 Cardamine hirsuta HOM05D001068 ORTHO05D002190 4.2e-40 168.3 120 66.7
Cpa.g.sc50.2 Carica papaya HOM05D001068 ORTHO05D002190 4.2e-40 168.3 120 66.7
Gohir.D01G018500 Gossypium hirsutum HOM05D001068 ORTHO05D002190 4.2e-40 168.3 120 65.8
SalBow7G1339 Salvia bowleyana HOM05D001068 ORTHO05D002190 4.2e-40 168.3 122 63.9
AT3G06690 Arabidopsis thaliana HOM05D001068 ORTHO05D013681 5.5e-40 167.9 120 65.8
BraA10t42771Z Brassica rapa HOM05D001068 ORTHO05D002190 5.5e-40 167.9 118 66.9
Oeu000574.1 Olea europaea HOM05D001068 ORTHO05D002190 5.5e-40 167.9 122 63.1
A10p05050 Brassica napus HOM05D001068 ORTHO05D002190 7.2e-40 167.5 118 66.9
Gorai.002G020700 Gossypium raimondii HOM05D001068 ORTHO05D002190 7.2e-40 167.5 120 65.8
ATR0602G078 Amborella trichopoda HOM05D001068 ORTHO05D002190 9.4e-40 167.2 120 64.2
Ca_18909_v3 Cicer arietinum L. HOM05D001068 ORTHO05D002190 9.4e-40 167.2 122 63.1
Gohir.A03G153650 Gossypium hirsutum HOM05D001068 ORTHO05D002190 9.4e-40 167.2 120 65.8
BcaB02g06806 Brassica carinata HOM05D001068 ORTHO05D002190 1.2e-39 166.8 114 68.4
Lj3g0009326 Lotus japonicus HOM05D001068 ORTHO05D002190 1.2e-39 166.8 117 65.8
Lalb_Chr03g0029731 Lupinus albus HOM05D001068 ORTHO05D002190 1.2e-39 166.8 119 65.5
MELO3C019320.2 Cucumis melo HOM05D001068 ORTHO05D002190 2.1e-39 166.0 124 62.1
Oeu000573.1 Olea europaea HOM05D001068 ORTHO05D002190 4.7e-39 164.9 122 65.6
AT1G06310 Arabidopsis thaliana HOM05D001068 ORTHO05D002190 6.1e-39 164.5 120 64.2
Aqoxy1G02246_Aqoxy1G02247 Aquilegia oxysepala HOM05D001068 ORTHO05D002190 7.9e-39 164.1 118 65.3
THA.LOC104800850 Tarenaya hassleriana HOM05D001068 ORTHO05D002190 7.9e-39 164.1 119 63.9
BcaC05g24275 Brassica carinata HOM05D001068 ORTHO05D002190 1.0e-38 163.7 115 67.0
C05p04640 Brassica napus HOM05D001068 ORTHO05D002190 1.0e-38 163.7 115 67.0
BolC5t29237H Brassica oleracea HOM05D001068 ORTHO05D002190 1.0e-38 163.7 115 67.0
DCAR_009762 Daucus carota HOM05D001068 ORTHO05D002190 1.0e-38 163.7 121 65.3
GSVIVG01023773001 Vitis vinifera HOM05D001068 ORTHO05D013681 1.8e-38 162.9 119 68.1
Aa31LG1G7310 Aethionema arabicum HOM05D001068 ORTHO05D002190 2.3e-38 162.5 116 66.4
Gohir.A01G019900 Gossypium hirsutum HOM05D001068 ORTHO05D002190 2.3e-38 162.5 120 63.3
Zm00001eb148110 Zea mays HOM05D001068 ORTHO05D002190 8.8e-38 160.6 121 63.6
DCAR_021268 Daucus carota HOM05D001068 ORTHO05D002190 1.1e-37 160.2 116 65.5
CDE08G0847 Ceratophyllum demersum HOM05D001068 ORTHO05D002190 1.5e-37 159.8 122 60.7
SGA_v2.0_scaffold258G45790 Striga asiatica HOM05D001068 ORTHO05D002190 2.0e-37 159.5 117 64.1
AL1G16320 Arabidopsis lyrata HOM05D001068 ORTHO05D002190 9.7e-37 157.1 120 61.7
Migut.M00195 Erythranthe guttata HOM05D001068 ORTHO05D002190 2.2e-36 156.0 122 60.7
Os06g0354500 Oryza sativa ssp. japonica HOM05D001068 ORTHO05D002190 2.8e-36 155.6 119 61.3
PSO541G4864 Papaver somniferum HOM05D001068 ORTHO05D002190 4.8e-36 154.8 118 63.6
PSO675G3167 Papaver somniferum HOM05D001068 ORTHO05D002190 2.4e-35 152.5 118 62.7
MD09G1241500 Malus domestica HOM05D001068 ORTHO05D013681 5.9e-34 147.9 117 63.2
HPP92_027388 Vanilla planifolia HOM05D001068 ORTHO05D002190 5.9e-34 147.9 121 61.2
SEGI_33260 Sequoiadendron giganteum HOM05D001068 ORTHO05D002190 3.2e-32 142.1 115 58.3
VMungo1127G1906 Vigna mungo HOM05D001068 ORTHO05D002190 3.6e-31 138.7 97 68.0
Dinv19990 Davidia involucrata HOM05D001068 ORTHO05D002190 3.0e-30 135.6 114 59.6
FvH4_6g26900 Fragaria vesca HOM05D001068 ORTHO05D002190 4.4e-29 131.7 93 67.7
SEGI_21730 Sequoiadendron giganteum HOM05D001068 ORTHO05D002190 5.7e-29 131.3 115 54.8
SEGI_20994 Sequoiadendron giganteum HOM05D001068 ORTHO05D002190 1.7e-28 129.8 115 53.0
SEGI_29810 Sequoiadendron giganteum HOM05D001068 ORTHO05D002190 2.8e-28 129.0 113 55.8
Pp3c26_540 Physcomitrium patens HOM05D001068 ORTHO05D002190 8.2e-28 127.5 113 54.9
SMO266G0061 Selaginella moellendorffii HOM05D001068 ORTHO05D002190 7.0e-27 124.4 118 50.8
AagrBONN_evm.TU.Sc2ySwM_362.999 Anthoceros agrestis HOM05D001068 ORTHO05D002190 9.1e-27 124.0 111 52.3
BcaC05g24285 Brassica carinata HOM05D001068 ORTHO05D013681 7.7e-26 120.9 72 79.2
Oeu038268.1 Olea europaea HOM05D001068 ORTHO05D013681 5.0e-25 118.2 74 71.6
Pp3c13_22370 Physcomitrium patens HOM05D001068 ORTHO05D002190 5.0e-25 118.2 114 50.0
BcaB02g06804 Brassica carinata HOM05D001068 ORTHO05D002190 3.2e-24 115.5 93 59.1
GSVIVG01022584001 Vitis vinifera HOM05D001068 ORTHO05D013681 1.2e-23 113.6 85 68.2
Mapoly0007s0119 Marchantia polymorpha HOM05D001068 ORTHO05D002190 1.6e-23 113.2 114 50.0
BcaB02g06788 Brassica carinata HOM05D001068 ORTHO05D002190 1.0e-22 110.5 112 51.8
A10p05030 Brassica napus HOM05D001068 ORTHO05D013681 9.8e-21 104.0 85 63.5
Cc00_g26970 Coffea canephora HOM05D001068 ORTHO05D013681 9.8e-21 104.0 72 66.7
BcaC05g24280 Brassica carinata HOM05D001068 ORTHO05D002190 1.6e-18 96.7 94 58.5
Carub.0001s0567 Capsella rubella HOM05D001068 ORTHO05D013681 7.7e-18 94.4 82 58.5
Lsat_1_v5_gn_4_28500 Lactuca sativa HOM05D001068 ORTHO05D013681 6.5e-17 91.3 59 74.6
RcHm_v2.0_Chr6g0266301 Rosa chinensis HOM05D001068 ORTHO05D013681 7.0e-11 71.2 58 58.6
COL.COLO4_04705 Corchorus olitorius HOM05D001068 ORTHO05D002190 1.9e-08 63.2 48 60.4
HanXRQChr04g0099171 Helianthus annuus HOM05D001068 ORTHO05D013681 2.5e-08 62.8 36 86.1
RcHm_v2.0_Chr7g0226181 Rosa chinensis HOM05D001068 ORTHO05D020111 2.5e-08 62.8 64 53.1
Aa31LG1G8290 Aethionema arabicum HOM05D001068 ORTHO05D013681 2.1e-07 59.7 49 59.2
RcHm_v2.0_Chr6g0266281 Rosa chinensis HOM05D001068 ORTHO05D020111 1.4e-06 57.0 34 79.4
RcHm_v2.0_Chr7g0206361 Rosa chinensis HOM05D001068 ORTHO05D020111 1.4e-06 57.0 34 79.4


User provided reference genes

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