Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 1.3e-183 646.4 349 100.0
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 6.7e-140 501.1 353 78.5
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 5.4e-113 411.8 298 78.5
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 7.5e-107 391.3 347 61.4
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 9.2e-105 384.4 300 69.0
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 2.0e-104 383.3 300 69.7
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 1.5e-102 377.1 300 67.0
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 1.5e-102 377.1 306 67.3
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 4.3e-102 375.6 300 65.7
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 4.7e-101 372.1 302 67.9
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 8.1e-101 371.3 287 70.4
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 8.1e-101 371.3 302 65.9
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 1.1e-100 370.9 321 62.6
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 2.3e-100 369.8 292 66.1
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 6.8e-100 368.2 312 65.4
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 6.8e-100 368.2 302 67.9
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 1.7e-98 363.6 305 67.2
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 2.2e-98 363.2 288 67.7
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 2.2e-98 363.2 300 65.7
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 4.9e-98 362.1 346 58.1
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 1.1e-97 360.9 319 63.6
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 1.4e-97 360.5 299 65.6
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 2.4e-97 359.8 297 63.6
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 3.2e-97 359.4 302 64.9
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 5.4e-97 358.6 320 64.4
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 1.2e-96 357.5 325 62.8
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 2.7e-96 356.3 321 61.7
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 4.6e-96 355.5 324 62.7
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 4.6e-96 355.5 318 63.2
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 7.8e-96 354.8 298 65.8
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 1.0e-95 354.4 302 64.2
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 3.9e-95 352.4 265 69.8
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 3.9e-95 352.4 304 64.8
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 5.1e-95 352.1 306 66.0
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 6.6e-95 351.7 300 68.0
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 2.5e-94 349.7 310 61.6
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 1.2e-93 347.4 336 57.4
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 1.2e-93 347.4 286 65.7
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 2.1e-93 346.7 364 57.7
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 3.6e-93 345.9 307 63.2
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 4.7e-93 345.5 306 60.8
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 5.2e-92 342.0 346 57.8
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 1.2e-91 340.9 295 62.0
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 3.4e-91 339.3 309 62.1
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 3.4e-91 339.3 303 65.3
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 9.9e-91 337.8 305 63.6
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 2.2e-90 336.7 276 65.2
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 8.4e-90 334.7 290 64.5
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 1.4e-89 334.0 300 60.7
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 1.9e-89 333.6 308 61.4
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 2.1e-88 330.1 302 63.6
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 6.0e-88 328.6 310 59.0
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 2.3e-87 326.6 298 62.4
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 6.6e-87 325.1 287 63.1
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 1.9e-86 323.6 330 55.8
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 9.6e-86 321.2 343 54.5
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 9.6e-86 321.2 252 65.5
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 1.2e-85 320.9 307 62.2
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 2.1e-85 320.1 276 64.1
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 2.8e-85 319.7 294 62.2
Dinv15338 Davidia involucrata HOM05D005493 ORTHO05D007154 6.2e-85 318.5 248 71.0
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 2.4e-84 316.6 251 66.1
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 1.2e-83 314.3 355 52.7
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 4.4e-83 312.4 255 62.0
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 7.6e-83 311.6 297 57.9
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 1.3e-82 310.8 325 57.5
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 1.7e-82 310.5 244 64.8
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 1.7e-82 310.5 299 56.5
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 2.9e-82 309.7 217 70.5
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 3.8e-82 309.3 252 63.1
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 1.4e-81 307.4 306 59.5
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 1.4e-81 307.4 301 60.5
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 9.3e-81 304.7 217 68.7
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 3.5e-80 302.8 303 56.1
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 7.8e-80 301.6 299 59.9
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 1.0e-79 301.2 280 59.3
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 2.3e-79 300.1 318 57.2
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 8.7e-79 298.1 290 60.3
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 1.9e-78 297.0 316 57.0
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 1.9e-78 297.0 330 55.5
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 2.5e-78 296.6 319 54.5
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 4.3e-78 295.8 316 57.0
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 4.3e-78 295.8 280 58.6
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 9.6e-78 294.7 303 59.1
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 9.6e-78 294.7 303 59.1
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 1.3e-77 294.3 316 56.0
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 1.1e-76 291.2 324 54.0
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 1.8e-76 290.4 303 57.4
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 4.0e-76 289.3 316 55.4
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 4.0e-76 289.3 316 55.4
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 3.4e-75 286.2 297 57.6
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 7.6e-75 285.0 237 66.2
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 1.3e-74 284.3 317 55.5
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 1.3e-74 284.3 326 54.0
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 2.9e-74 283.1 301 56.8
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 3.8e-74 282.7 326 53.7
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 4.9e-74 282.3 326 53.7
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 6.4e-74 282.0 295 53.9
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 1.1e-73 281.2 337 53.7
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 1.9e-73 280.4 316 53.2
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 1.8e-71 273.9 272 56.2
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 9.6e-70 268.1 312 53.5
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 2.1e-69 266.9 233 59.2
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 6.2e-69 265.4 267 58.1
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 5.3e-68 262.3 305 54.1
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 4.9e-66 255.8 329 52.0
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 3.2e-65 253.1 303 52.1
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 3.5e-64 249.6 264 54.2
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 5.1e-63 245.7 308 46.4
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 2.8e-61 240.0 262 57.3
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 3.4e-59 233.0 171 66.1
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 3.2e-57 226.5 286 48.3
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 2.1e-56 223.8 302 43.4
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 3.3e-54 216.5 237 47.7
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 6.9e-52 208.8 138 74.6
Sabra16G0010400 Salix brachista HOM05D005493 ORTHO05D007154 1.3e-50 204.5 322 49.1
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 2.5e-49 200.3 266 46.6
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 3.7e-45 186.4 116 76.7
SHI12358 Sapria himalayana HOM05D005493 ORTHO05D007154 2.6e-43 180.3 124 65.3
Actinidia11906 Actinidia chinensis HOM05D005493 ORTHO05D007154 1.7e-42 177.6 153 61.4
AagrBONN_evm.TU.Sc2ySwM_362.2751 Anthoceros agrestis HOM05D005493 ORTHO05D007154 8.2e-37 158.7 238 40.3
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 6.9e-36 155.6 94 77.7
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 6.9e-36 155.6 96 76.0
MCO13G503 Micromonas commoda HOM05D005493 ORTHO05D007154 2.9e-34 150.2 177 42.4
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 4.2e-33 146.4 298 34.2
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-25 121.7 264 32.2
Zm00001eb168490 Zea mays HOM05D000087 ORTHO05D011931 1.2e-24 118.2 69 79.7
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 8.8e-23 112.1 196 31.6
unitig_37.g12178 Utricularia gibba HOM05D005493 ORTHO05D007154 9.7e-22 108.6 159 50.3
SHI50428 Sapria himalayana HOM05D005493 ORTHO05D007154 1.6e-19 101.3 149 40.9
Cfa025804 Carpinus fangiana HOM05D005493 ORTHO05D007154 1.2e-14 85.1 380 27.1
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 7.5e-14 82.4 184 29.9
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 1.4e-12 78.2 191 28.8
vmacro23227 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 2.3e-10 70.9 61 62.3
unitig_37.g12179 Utricularia gibba HOM05D005493 ORTHO05D007154 1.5e-09 68.2 58 63.8
PRCOL_00003979 Prasinoderma coloniale HOM05D005493 ORTHO05D049008 1.2e-06 58.5 213 24.9


User provided reference genes

Program Settings