Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0513241 Helianthus annuus HOM05D005759 ORTHO05D007172 2.4e-165 585.5 309 100.0
HanXRQChr14g0456321 Helianthus annuus HOM05D005759 ORTHO05D007172 1.3e-123 446.8 314 74.5
Lsat_1_v5_gn_2_102781 Lactuca sativa HOM05D005759 ORTHO05D007172 4.2e-117 425.2 313 71.6
ECA238G2526 Erigeron canadensis HOM05D005759 ORTHO05D007172 1.8e-91 340.1 263 65.4
Dinv31290 Davidia involucrata HOM05D005759 ORTHO05D007172 1.0e-86 324.3 337 53.1
vmacro10276 Vaccinium macrocarpon HOM05D005759 ORTHO05D007172 1.1e-82 310.8 324 54.3
Rhsim09G0144200 Rhododendron simsii HOM05D005759 ORTHO05D007172 9.7e-82 307.8 323 53.9
Thecc.10G099000 Theobroma cacao HOM05D005759 ORTHO05D007172 1.4e-80 303.9 341 49.0
Sed0025588 Sechium edule HOM05D005759 ORTHO05D007172 2.6e-79 299.7 330 50.6
Gohir.D10G206700 Gossypium hirsutum HOM05D005759 ORTHO05D007172 5.9e-79 298.5 327 50.2
AUR62041544 Chenopodium quinoa HOM05D005759 ORTHO05D007172 7.7e-79 298.1 312 51.6
Oeu059850.1 Olea europaea HOM05D005759 ORTHO05D007172 2.2e-78 296.6 319 50.8
Gorai.011G232200 Gossypium raimondii HOM05D005759 ORTHO05D007172 3.8e-78 295.8 327 49.8
Ah.04g163640 Amaranthus hybridus HOM05D005759 ORTHO05D007172 1.1e-77 294.3 314 49.7
AUR62041532 Chenopodium quinoa HOM05D005759 ORTHO05D007172 1.1e-77 294.3 315 50.5
CiPaw.13G035800 Carya illinoinensis HOM05D005759 ORTHO05D007172 4.2e-77 292.4 319 51.4
Cfa011218 Carpinus fangiana HOM05D005759 ORTHO05D007172 2.7e-76 289.7 335 48.4
Duzib114G0077 Durio zibethinus HOM05D005759 ORTHO05D007172 3.6e-76 289.3 339 47.5
RhsimUnG0061600 Rhododendron simsii HOM05D005759 ORTHO05D007172 6.1e-76 288.5 364 47.8
MELO3C019880.2 Cucumis melo HOM05D005759 ORTHO05D007172 7.9e-76 288.1 323 48.3
RcHm_v2.0_Chr1g0334181 Rosa chinensis HOM05D005759 ORTHO05D007172 2.3e-75 286.6 330 49.4
Actinidia31089 Actinidia chinensis HOM05D005759 ORTHO05D007172 3.0e-75 286.2 332 48.8
CsaV3_2G032950 Cucumis sativus L. HOM05D005759 ORTHO05D007172 3.0e-75 286.2 323 48.6
FvH4_7g06330 Fragaria vesca HOM05D005759 ORTHO05D007172 3.9e-75 285.8 328 54.0
FAN03G0647 Fragaria x ananassa HOM05D005759 ORTHO05D007172 5.1e-75 285.4 328 52.7
THA.LOC104826349 Tarenaya hassleriana HOM05D005759 ORTHO05D007172 5.1e-75 285.4 328 50.3
EL10Ac4g08636 Beta vulgaris HOM05D005759 ORTHO05D007172 6.7e-75 285.0 323 48.0
Haze_02624 Corylus avellana HOM05D005759 ORTHO05D007172 3.3e-74 282.7 335 48.1
Manes.07G091866 Manihot esculenta HOM05D005759 ORTHO05D007172 3.3e-74 282.7 334 48.8
Ciclev10031564m.g Citrus clementina HOM05D005759 ORTHO05D007172 9.7e-74 281.2 341 47.8
TAR623G0127 Trochodendron aralioides HOM05D005759 ORTHO05D007172 9.7e-74 281.2 327 49.2
GSVIVG01034722001 Vitis vinifera HOM05D005759 ORTHO05D007172 1.7e-73 280.4 313 49.2
Cc02_g10290 Coffea canephora HOM05D005759 ORTHO05D007172 6.3e-73 278.5 338 47.9
QL04p040912 Quercus lobata HOM05D005759 ORTHO05D007172 6.3e-73 278.5 329 46.8
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 8.2e-73 278.1 330 48.5
COL.COLO4_35597 Corchorus olitorius HOM05D005759 ORTHO05D007172 1.1e-72 277.7 334 47.3
TWI38G0593 Tripterygium wilfordii HOM05D005759 ORTHO05D007172 1.1e-72 277.7 338 48.2
FAN06G0090 Fragaria x ananassa HOM05D005759 ORTHO05D007172 1.4e-72 277.3 338 52.1
ClCG08G008080 Citrullus lanatus HOM05D005759 ORTHO05D007172 2.4e-72 276.6 335 46.0
Hund06749 Selenicereus undatus HOM05D005759 ORTHO05D007172 5.3e-72 275.4 323 49.2
MD07G1072000 Malus domestica HOM05D005759 ORTHO05D007172 2.6e-71 273.1 335 45.7
PGR142G1839 Punica granatum HOM05D005759 ORTHO05D007172 2.6e-71 273.1 326 49.1
DCAR_030749 Daucus carota HOM05D005759 ORTHO05D007172 3.5e-71 272.7 321 46.7
Peaxi162Scf00244g00007 Petunia axillaris HOM05D005759 ORTHO05D007172 3.5e-71 272.7 317 48.9
Aa31LG5G7620 Aethionema arabicum HOM05D005759 ORTHO05D007172 1.3e-70 270.8 316 47.8
Sopen11g003460 Solanum pennellii HOM05D005759 ORTHO05D007172 1.3e-70 270.8 309 49.5
Actinidia34708 Actinidia chinensis HOM05D005759 ORTHO05D007172 1.7e-70 270.4 290 50.7
Nitab4.5_0010486g0020 Nicotiana tabacum HOM05D005759 ORTHO05D007172 1.7e-70 270.4 312 49.4
SGA_v2.0_scaffold13G06508 Striga asiatica HOM05D005759 ORTHO05D007172 2.2e-70 270.0 324 47.5
Solyc11g007610.2 Solanum lycopersicum HOM05D005759 ORTHO05D007172 5.0e-70 268.9 309 49.5
PGSC0003DMG400027344 Solanum tuberosum HOM05D005759 ORTHO05D007172 5.0e-70 268.9 309 49.8
Atru.chr12.959 Acer truncatum HOM05D005759 ORTHO05D007172 6.5e-70 268.5 312 49.7
CAN.G135.64 Capsicum annuum HOM05D005759 ORTHO05D007172 6.5e-70 268.5 309 48.9
Lalb_Chr03g0036351 Lupinus albus HOM05D005759 ORTHO05D007172 1.9e-69 266.9 330 45.5
Nitab4.5_0002259g0090 Nicotiana tabacum HOM05D005759 ORTHO05D007172 1.9e-69 266.9 321 48.9
MD02G1244900 Malus domestica HOM05D005759 ORTHO05D007172 2.5e-69 266.5 335 44.2
TPR.G7613 Trifolium pratense HOM05D005759 ORTHO05D007172 4.2e-69 265.8 316 46.5
CSS0028406 Camellia sinensis var. sinensis HOM05D005759 ORTHO05D007172 5.5e-69 265.4 295 50.8
Hma1.2p1_0352F.1_g133040 Hydrangea macrophylla HOM05D005759 ORTHO05D007172 6.1e-68 261.9 345 43.8
CDE04G0943 Ceratophyllum demersum HOM05D005759 ORTHO05D007172 1.7e-65 253.8 319 45.5
Aqoxy1G00957 Aquilegia oxysepala HOM05D005759 ORTHO05D007172 2.2e-65 253.4 324 46.3
A08p00720 Brassica napus HOM05D005759 ORTHO05D007172 2.8e-65 253.1 311 47.3
BraA08t32129Z Brassica rapa HOM05D005759 ORTHO05D007172 2.8e-65 253.1 311 47.3
HPP92_024384 Vanilla planifolia HOM05D005759 ORTHO05D007172 1.1e-64 251.1 313 44.4
Potri.010G234000 Populus trichocarpa HOM05D005759 ORTHO05D007172 2.4e-64 250.0 315 45.4
Medtr1g050730 Medicago truncatula HOM05D005759 ORTHO05D007172 3.1e-64 249.6 311 45.3
SalBow6G0601 Salvia bowleyana HOM05D005759 ORTHO05D007172 9.1e-64 248.1 329 45.3
Glyma.02G165400 Glycine max HOM05D005759 ORTHO05D007172 1.6e-63 247.3 335 43.9
Zm00001eb164020 Zea mays HOM05D005759 ORTHO05D007172 1.6e-63 247.3 312 44.9
CARHR121620 Cardamine hirsuta HOM05D005759 ORTHO05D007172 2.0e-63 246.9 315 46.0
Sabra10G0181400 Salix brachista HOM05D005759 ORTHO05D007172 2.7e-63 246.5 328 44.8
Sp4g11420 Schrenkiella parvula HOM05D005759 ORTHO05D007172 1.7e-62 243.8 321 46.7
AT2G28600 Arabidopsis thaliana HOM05D005759 ORTHO05D007172 6.5e-62 241.9 317 44.8
Prupe.2G090100 Prunus persica HOM05D005759 ORTHO05D007172 8.5e-62 241.5 332 42.5
CANSAT56G0546 Cannabis sativa HOM05D005759 ORTHO05D007172 2.5e-61 240.0 317 45.1
MSTRG.409 Avicennia marina HOM05D005759 ORTHO05D007172 3.2e-61 239.6 294 45.2
Migut.F01660 Erythranthe guttata HOM05D005759 ORTHO05D007172 3.2e-61 239.6 290 46.6
Psat6g094520 Pisum sativum HOM05D005759 ORTHO05D007172 3.2e-61 239.6 321 42.4
Lj5g0004167 Lotus japonicus HOM05D005759 ORTHO05D007172 4.2e-61 239.2 282 45.0
Os12g0147500 Oryza sativa ssp. japonica HOM05D005759 ORTHO05D007172 9.4e-61 238.0 309 49.2
AL4G23090 Arabidopsis lyrata HOM05D005759 ORTHO05D007172 4.7e-60 235.7 319 42.6
Sc06g0002190 Simmondsia chinensis HOM05D005759 ORTHO05D007172 6.1e-60 235.3 327 45.0
VMungo0720G2821 Vigna mungo HOM05D005759 ORTHO05D007172 1.4e-59 234.2 309 42.4
Carub.0004s0956 Capsella rubella HOM05D005759 ORTHO05D007172 3.0e-59 233.0 316 43.4
unitig_736.g22320 Utricularia gibba HOM05D005759 ORTHO05D007172 5.2e-59 232.3 333 42.6
Phvul.007G245100 Phaseolus vulgaris HOM05D005759 ORTHO05D007172 8.8e-59 231.5 331 41.7
Nn2g13981 Nelumbo nucifera HOM05D005759 ORTHO05D007172 1.2e-58 231.1 330 41.5
PSO339G3253 Papaver somniferum HOM05D005759 ORTHO05D007172 1.2e-55 221.1 309 40.8
arahy.Tifrunner.gnm1.ann1.0Q505S Arachis hypogaea HOM05D005759 ORTHO05D007172 2.0e-55 220.3 317 42.0
arahy.Tifrunner.gnm1.ann1.Y61W31 Arachis hypogaea HOM05D005759 ORTHO05D007172 1.0e-54 218.0 317 40.7
Thhalv10016555m.g Eutrema salsugineum HOM05D005759 ORTHO05D007172 1.3e-54 217.6 316 42.7
ATR0820G119 Amborella trichopoda HOM05D005759 ORTHO05D007172 2.9e-54 216.5 326 40.2
PSO384G4559 Papaver somniferum HOM05D005759 ORTHO05D007172 6.5e-54 215.3 309 39.8
Eucgr.G02717 Eucalyptus grandis HOM05D005759 ORTHO05D007172 1.2e-52 211.1 259 43.2
C03p92620 Brassica napus HOM05D005759 ORTHO05D007172 6.1e-52 208.8 311 41.2
MBI17_g30596_MAGBIO Magnolia biondii HOM05D005759 ORTHO05D007172 6.1e-52 208.8 337 38.9
Migut.F00917 Erythranthe guttata HOM05D005759 ORTHO05D007172 2.3e-51 206.8 275 42.5
BolC3t21576H Brassica oleracea HOM05D005759 ORTHO05D007172 3.0e-51 206.5 311 41.8
BcaC01g01514 Brassica carinata HOM05D005759 ORTHO05D007172 8.8e-51 204.9 311 40.5
Duzib128G1757 Durio zibethinus HOM05D005759 ORTHO05D007172 7.5e-50 201.8 164 56.1
Nn6g35073 Nelumbo nucifera HOM05D005759 ORTHO05D007172 2.8e-49 199.9 278 43.5
BcaB04g16965 Brassica carinata HOM05D005759 ORTHO05D007172 4.9e-49 199.1 310 40.3
Ca_06884_v3 Cicer arietinum L. HOM05D005759 ORTHO05D007172 3.3e-45 186.4 277 39.7
SalBow4G3335 Salvia bowleyana HOM05D005759 ORTHO05D007172 1.0e-43 181.4 161 53.4
SGA_v2.0_scaffold62G21347 Striga asiatica HOM05D005759 ORTHO05D007172 4.4e-42 176.0 169 47.3
PSO063G1818 Papaver somniferum HOM05D005759 ORTHO05D007172 8.3e-41 171.8 166 47.6
Zm00001eb086490 Zea mays HOM05D005759 ORTHO05D007172 6.2e-36 155.6 149 51.7
CSS0000330 Camellia sinensis var. sinensis HOM05D005759 ORTHO05D007172 1.2e-34 151.4 222 43.7
unitig_899.g14480 Utricularia gibba HOM05D005759 ORTHO05D007172 2.0e-34 150.6 186 39.2
Pp3c1_25970 Physcomitrium patens HOM05D005759 ORTHO05D007172 2.2e-25 120.6 319 28.5
Mapoly0120s0020 Marchantia polymorpha HOM05D005759 ORTHO05D007172 8.3e-25 118.6 369 26.0
Zm00001eb201540 Zea mays HOM05D005759 ORTHO05D007172 9.5e-21 105.1 91 54.9
AagrBONN_evm.TU.Sc2ySwM_228.2343 Anthoceros agrestis HOM05D005759 ORTHO05D007172 2.1e-20 104.0 356 27.5
SEGI_00328 Sequoiadendron giganteum HOM05D005759 ORTHO05D000001 8.4e-17 92.0 265 30.2
Peaxi162Scf00244g00111 Petunia axillaris HOM05D005759 ORTHO05D007172 1.9e-16 90.9 63 66.7
Cpa.g.sc720.1 Carica papaya HOM05D005759 ORTHO05D007172 3.2e-16 90.1 178 37.1
PSO170G6466 Papaver somniferum HOM05D005759 ORTHO05D007172 9.2e-16 88.6 119 40.3
Lsat_1_v5_gn_7_84341 Lactuca sativa HOM05D005759 ORTHO05D007172 2.0e-10 70.9 84 50.0
FAN01G1973 Fragaria x ananassa HOM05D005759 ORTHO05D007172 9.9e-10 68.6 303 27.1
HanXRQChr06g0169121 Helianthus annuus HOM05D005759 ORTHO05D007172 3.8e-09 66.6 54 55.6
CBR_g23342 Chara braunii HOM05D005759 ORTHO05D002561 2.7e-07 60.5 77 41.6
Ca_11766_v3 Cicer arietinum L. HOM05D001348 ORTHO05D002788 2.3e-06 57.4 36 72.2
HanXRQChr17g0553981 Helianthus annuus HOM05D005759 ORTHO05D007172 3.0e-06 57.0 31 80.6


User provided reference genes

Program Settings