Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0511311 Helianthus annuus HOM05D005315 ORTHO05D006589 5.7e-124 447.6 225 100.0
HanXRQChr12g0357681 Helianthus annuus HOM05D005315 ORTHO05D006589 1.9e-90 336.3 216 82.4
ECA234G3298 Erigeron canadensis HOM05D005315 ORTHO05D006589 2.9e-75 285.8 217 71.9
ECA247G4081 Erigeron canadensis HOM05D005315 ORTHO05D006589 3.7e-75 285.4 217 71.9
Cc07_g16220 Coffea canephora HOM05D005315 ORTHO05D006589 2.5e-71 272.7 184 76.6
Duzib133G0389 Durio zibethinus HOM05D005315 ORTHO05D006589 9.6e-71 270.8 188 75.0
Dinv33007 Davidia involucrata HOM05D005315 ORTHO05D006589 1.1e-69 267.3 216 66.7
CSS0021362 Camellia sinensis var. sinensis HOM05D005315 ORTHO05D006589 6.8e-69 264.6 219 64.8
CSS0027333 Camellia sinensis var. sinensis HOM05D005315 ORTHO05D006589 6.8e-69 264.6 219 64.8
Prupe.8G254400 Prunus persica HOM05D005315 ORTHO05D006589 2.0e-68 263.1 222 64.9
Hma1.2p1_0399F.1_g144060 Hydrangea macrophylla HOM05D005315 ORTHO05D006589 4.4e-68 261.9 219 66.2
CAN.G276.6 Capsicum annuum HOM05D005315 ORTHO05D006589 5.8e-68 261.5 219 64.8
MD11G1300200 Malus domestica HOM05D005315 ORTHO05D006589 5.8e-68 261.5 221 64.3
Nitab4.5_0008505g0010 Nicotiana tabacum HOM05D005315 ORTHO05D006589 2.2e-67 259.6 219 65.8
PGSC0003DMG400016587 Solanum tuberosum HOM05D005315 ORTHO05D006589 3.8e-67 258.8 219 63.0
Oeu028371.1 Olea europaea HOM05D005315 ORTHO05D006589 4.9e-67 258.5 219 63.0
Sopen04g023370 Solanum pennellii HOM05D005315 ORTHO05D006589 6.4e-67 258.1 223 61.9
MSTRG.16494 Avicennia marina HOM05D005315 ORTHO05D006589 8.4e-67 257.7 219 63.5
Lj6A760G44 Lonicera japonica HOM05D005315 ORTHO05D006589 8.4e-67 257.7 215 67.0
Aa31LG10G16750 Aethionema arabicum HOM05D005315 ORTHO05D006589 1.9e-66 256.5 217 63.1
Cfa006013 Carpinus fangiana HOM05D005315 ORTHO05D006589 1.9e-66 256.5 221 63.8
COL.COLO4_08010 Corchorus olitorius HOM05D005315 ORTHO05D006589 1.9e-66 256.5 219 64.4
Prupe.2G090200 Prunus persica HOM05D005315 ORTHO05D006589 1.9e-66 256.5 222 63.5
Sed0018657 Sechium edule HOM05D005315 ORTHO05D006589 2.4e-66 256.1 218 63.8
RcHm_v2.0_Chr6g0292881 Rosa chinensis HOM05D005315 ORTHO05D006589 3.2e-66 255.8 223 64.1
Hund18046 Selenicereus undatus HOM05D005315 ORTHO05D006589 4.2e-66 255.4 217 63.6
Duzib138G1810 Durio zibethinus HOM05D005315 ORTHO05D006589 5.4e-66 255.0 219 64.4
Solyc04g053080.4 Solanum lycopersicum HOM05D005315 ORTHO05D006589 5.4e-66 255.0 221 62.0
CsaV3_7G028820 Cucumis sativus L. HOM05D005315 ORTHO05D006589 7.1e-66 254.6 218 63.3
Nitab4.5_0000492g0210 Nicotiana tabacum HOM05D005315 ORTHO05D006589 9.3e-66 254.2 220 65.9
Eucgr.K03447 Eucalyptus grandis HOM05D005315 ORTHO05D006589 1.2e-65 253.8 221 62.4
Nitab4.5_0013619g0010 Nicotiana tabacum HOM05D005315 ORTHO05D008125 1.2e-65 253.8 218 64.7
Thecc.01G292600 Theobroma cacao HOM05D005315 ORTHO05D006589 1.2e-65 253.8 219 63.5
MELO3C016054.2 Cucumis melo HOM05D005315 ORTHO05D006589 1.6e-65 253.4 218 63.8
FAN20G2356 Fragaria x ananassa HOM05D005315 ORTHO05D006589 2.7e-65 252.7 220 62.3
MD03G1278200 Malus domestica HOM05D005315 ORTHO05D006589 2.7e-65 252.7 218 64.2
ClCG09G006320 Citrullus lanatus HOM05D005315 ORTHO05D006589 4.6e-65 251.9 217 64.5
Gorai.004G141000 Gossypium raimondii HOM05D005315 ORTHO05D006589 4.6e-65 251.9 219 63.5
Nitab4.5_0000431g0150 Nicotiana tabacum HOM05D005315 ORTHO05D006589 4.6e-65 251.9 218 65.1
SGA_v2.0_scaffold304G47908 Striga asiatica HOM05D005315 ORTHO05D006589 4.6e-65 251.9 216 62.0
DCAR_003965 Daucus carota HOM05D005315 ORTHO05D006589 6.0e-65 251.5 221 62.9
Gohir.A08G116900 Gossypium hirsutum HOM05D005315 ORTHO05D006589 6.0e-65 251.5 219 63.0
Gohir.D08G137700 Gossypium hirsutum HOM05D005315 ORTHO05D006589 6.0e-65 251.5 219 63.9
QL10p015953 Quercus lobata HOM05D005315 ORTHO05D006589 7.8e-65 251.1 223 62.3
Manes.05G066800 Manihot esculenta HOM05D005315 ORTHO05D006589 1.0e-64 250.8 221 61.1
Nn1g09463 Nelumbo nucifera HOM05D005315 ORTHO05D006589 1.3e-64 250.4 222 60.4
Nn1g09466 Nelumbo nucifera HOM05D005315 ORTHO05D006589 1.3e-64 250.4 222 60.4
Sp5g00580 Schrenkiella parvula HOM05D005315 ORTHO05D006589 3.9e-64 248.8 219 60.3
Aqoxy2G03077 Aquilegia oxysepala HOM05D005315 ORTHO05D006589 1.5e-63 246.9 217 60.8
CANSAT25G3366 Cannabis sativa HOM05D005315 ORTHO05D006589 1.9e-63 246.5 218 61.5
TPR.G32271 Trifolium pratense HOM05D005315 ORTHO05D006589 1.9e-63 246.5 221 60.6
VMungo1383G1398 Vigna mungo HOM05D005315 ORTHO05D006589 1.9e-63 246.5 221 62.0
AUR62002550 Chenopodium quinoa HOM05D005315 ORTHO05D006589 2.5e-63 246.1 219 62.1
Sc24g0001270 Simmondsia chinensis HOM05D005315 ORTHO05D006589 2.5e-63 246.1 218 61.9
Atru.chr4.1184 Acer truncatum HOM05D005315 ORTHO05D006589 3.3e-63 245.7 218 61.9
Peaxi162Scf01132g00228 Petunia axillaris HOM05D005315 ORTHO05D006589 3.3e-63 245.7 219 62.1
Glyma.19G207500 Glycine max HOM05D005315 ORTHO05D006589 4.3e-63 245.4 221 60.6
PSO210G5824 Papaver somniferum HOM05D005315 ORTHO05D006589 5.6e-63 245.0 217 62.2
Sabra14G0100000 Salix brachista HOM05D005315 ORTHO05D006589 5.6e-63 245.0 218 61.9
Ciclev10021031m.g Citrus clementina HOM05D005315 ORTHO05D006589 9.6e-63 244.2 219 61.6
Phvul.001G203400 Phaseolus vulgaris HOM05D005315 ORTHO05D006589 9.6e-63 244.2 220 60.9
Potri.014G134100 Populus trichocarpa HOM05D005315 ORTHO05D006589 1.6e-62 243.4 219 61.2
PSO170G6158 Papaver somniferum HOM05D005315 ORTHO05D006589 2.1e-62 243.0 217 62.2
AUR62029964 Chenopodium quinoa HOM05D005315 ORTHO05D006589 2.8e-62 242.7 219 61.6
Thhalv10006094m.g Eutrema salsugineum HOM05D005315 ORTHO05D006589 3.6e-62 242.3 219 59.8
EL10Ac1g00719 Beta vulgaris HOM05D005315 ORTHO05D006589 6.2e-62 241.5 219 63.0
ATR0665G323 Amborella trichopoda HOM05D005315 ORTHO05D006589 8.1e-62 241.1 218 61.9
Medtr4g104580 Medicago truncatula HOM05D005315 ORTHO05D006589 1.1e-61 240.7 220 59.5
HPP92_002250 Vanilla planifolia HOM05D005315 ORTHO05D006589 1.4e-61 240.4 218 60.1
Medtr7g108240 Medicago truncatula HOM05D005315 ORTHO05D006589 1.8e-61 240.0 220 59.5
BcaB02g08087 Brassica carinata HOM05D005315 ORTHO05D006589 3.1e-61 239.2 214 60.3
Lsat_1_v5_gn_5_90141 Lactuca sativa HOM05D005315 ORTHO05D006589 4.0e-61 238.8 212 61.8
C08p37650 Brassica napus HOM05D005315 ORTHO05D006589 5.3e-61 238.4 213 59.6
Sed0022397 Sechium edule HOM05D005315 ORTHO05D006589 5.3e-61 238.4 217 61.3
A04p00430 Brassica napus HOM05D005315 ORTHO05D006589 1.2e-60 237.3 213 60.1
A09p54790 Brassica napus HOM05D005315 ORTHO05D006589 1.2e-60 237.3 213 59.6
BolC8t51348H Brassica oleracea HOM05D005315 ORTHO05D006589 1.2e-60 237.3 211 60.7
BraA04t15762Z Brassica rapa HOM05D005315 ORTHO05D006589 1.2e-60 237.3 213 60.1
Gohir.D12G008800 Gossypium hirsutum HOM05D005315 ORTHO05D006589 1.2e-60 237.3 217 61.8
BraA09t40888Z Brassica rapa HOM05D005315 ORTHO05D006589 1.5e-60 236.9 213 59.6
QL12p024404 Quercus lobata HOM05D005315 ORTHO05D006589 1.5e-60 236.9 222 60.8
BcaC02g10325 Brassica carinata HOM05D005315 ORTHO05D006589 2.0e-60 236.5 213 59.6
C04p30300 Brassica napus HOM05D005315 ORTHO05D006589 2.0e-60 236.5 213 59.6
BolC4t24563H Brassica oleracea HOM05D005315 ORTHO05D006589 2.0e-60 236.5 213 59.6
MBI02_g41662_MAGBIO Magnolia biondii HOM05D005315 ORTHO05D006589 2.0e-60 236.5 218 59.6
Zm00001eb212540 Zea mays HOM05D005315 ORTHO05D006589 2.0e-60 236.5 219 58.9
AL5G45720 Arabidopsis lyrata HOM05D005315 ORTHO05D006589 2.6e-60 236.1 215 59.1
AT3G62940 Arabidopsis thaliana HOM05D005315 ORTHO05D006589 3.4e-60 235.7 215 58.6
CARHR173230 Cardamine hirsuta HOM05D005315 ORTHO05D006589 3.4e-60 235.7 215 58.6
Ca_09122_v3 Cicer arietinum L. HOM05D005315 ORTHO05D006589 5.8e-60 235.0 221 57.9
PGR044G2036 Punica granatum HOM05D005315 ORTHO05D006589 5.8e-60 235.0 218 59.6
Manes.01G214900 Manihot esculenta HOM05D005315 ORTHO05D006589 7.6e-60 234.6 219 58.4
Gorai.008G008700 Gossypium raimondii HOM05D005315 ORTHO05D006589 3.8e-59 232.3 219 59.8
Psat3g025640 Pisum sativum HOM05D005315 ORTHO05D006589 3.8e-59 232.3 218 58.3
Carub.0005s2959 Capsella rubella HOM05D005315 ORTHO05D006589 4.9e-59 231.9 212 59.9
Hma1.2p1_0209F.1_g088950 Hydrangea macrophylla HOM05D005315 ORTHO05D006589 8.4e-59 231.1 198 64.6
Glyma.03G210300 Glycine max HOM05D005315 ORTHO05D006589 1.9e-58 229.9 221 58.4
Lj1g0005840 Lotus japonicus HOM05D005315 ORTHO05D006589 3.2e-58 229.2 221 56.1
Haze_04835 Corylus avellana HOM05D005315 ORTHO05D006589 4.2e-58 228.8 210 61.4
Migut.B00780 Erythranthe guttata HOM05D005315 ORTHO05D006589 1.6e-57 226.9 216 59.3
Lalb_Chr04g0259741 Lupinus albus HOM05D005315 ORTHO05D006589 2.7e-57 226.1 221 56.6
Os04g0619500 Oryza sativa ssp. japonica HOM05D005315 ORTHO05D006589 6.0e-57 224.9 221 57.5
TWI59G0122 Tripterygium wilfordii HOM05D005315 ORTHO05D006589 3.0e-56 222.6 220 57.7
SEGI_33648 Sequoiadendron giganteum HOM05D005315 ORTHO05D006589 8.7e-56 221.1 215 55.3
Ah.12g052040 Amaranthus hybridus HOM05D005315 ORTHO05D006589 1.6e-54 216.9 209 58.4
arahy.Tifrunner.gnm1.ann1.EUG2WG Arachis hypogaea HOM05D005315 ORTHO05D006589 9.0e-53 211.1 221 53.8
arahy.Tifrunner.gnm1.ann1.NZ3ZKL Arachis hypogaea HOM05D005315 ORTHO05D006589 2.0e-52 209.9 221 53.8
CiPaw.07G101900 Carya illinoinensis HOM05D005315 ORTHO05D006589 4.5e-52 208.8 182 60.4
Mapoly0036s0154 Marchantia polymorpha HOM05D005315 ORTHO05D006589 4.5e-52 208.8 221 49.8
ATR0564G214 Amborella trichopoda HOM05D005315 ORTHO05D006589 5.8e-52 208.4 220 57.3
unitig_26.g9038 Utricularia gibba HOM05D005315 ORTHO05D006589 2.9e-51 206.1 219 53.9
Rhsim13G0016000 Rhododendron simsii HOM05D005315 ORTHO05D006589 3.5e-49 199.1 218 54.6
GSVIVG01010986001 Vitis vinifera HOM05D005315 ORTHO05D006589 2.3e-48 196.4 185 60.0
THA.LOC104802209 Tarenaya hassleriana HOM05D005315 ORTHO05D006589 3.9e-48 195.7 181 59.7
Cpa.g.sc9.185 Carica papaya HOM05D005315 ORTHO05D006589 1.1e-47 194.1 199 57.8
FvH4_2g14201 Fragaria vesca HOM05D005315 ORTHO05D006589 1.9e-47 193.4 220 52.3
FAN24G2129 Fragaria x ananassa HOM05D005315 ORTHO05D006589 1.9e-47 193.4 220 52.3
AagrBONN_evm.TU.Sc2ySwM_228.5144 Anthoceros agrestis HOM05D005315 ORTHO05D006589 2.5e-47 193.0 217 48.8
vmacro02497 Vaccinium macrocarpon HOM05D005315 ORTHO05D006589 4.8e-46 188.7 219 51.1
Actinidia32232 Actinidia chinensis HOM05D005315 ORTHO05D006589 8.1e-46 188.0 175 61.1
CBR_g50012 Chara braunii HOM05D005315 ORTHO05D006589 1.3e-43 180.6 227 46.3
SMO196G0226 Selaginella moellendorffii HOM05D005315 ORTHO05D006589 3.8e-43 179.1 207 51.2
MBI13_g04790_MAGBIO Magnolia biondii HOM05D005315 ORTHO05D006589 7.9e-41 171.4 162 58.0
Pp3c15_4060 Physcomitrium patens HOM05D005315 ORTHO05D006589 1.2e-36 157.5 216 42.6
RcHm_v2.0_Chr3g0496291 Rosa chinensis HOM05D005315 ORTHO05D006589 9.3e-34 147.9 179 49.2
TAR369G0925 Trochodendron aralioides HOM05D005315 ORTHO05D006589 1.5e-31 140.6 140 52.1
Cre01.g028550 Chlamydomonas reinhardtii HOM05D005315 ORTHO05D006589 4.3e-31 139.0 211 41.2
arahy.Tifrunner.gnm1.ann1.UST23B Arachis hypogaea HOM05D005315 ORTHO05D006589 2.4e-29 133.3 172 49.4
Sc24g0001280 Simmondsia chinensis HOM05D005315 ORTHO05D006589 6.9e-29 131.7 132 54.5
PRCOL_00001709 Prasinoderma coloniale HOM05D005315 ORTHO05D006589 1.5e-28 130.6 192 37.5
CDE04G3078 Ceratophyllum demersum HOM05D005315 ORTHO05D006589 1.7e-27 127.1 101 67.3
SMO196G0254 Selaginella moellendorffii HOM05D005315 ORTHO05D006589 2.9e-27 126.3 181 45.3
RcHm_v2.0_Chr5g0001231 Rosa chinensis HOM05D005315 ORTHO05D006589 6.5e-27 125.2 181 43.6
MCO04G021 Micromonas commoda HOM05D005315 ORTHO05D006589 1.9e-26 123.6 194 40.7
EL10Ac3g06247 Beta vulgaris HOM05D005315 ORTHO05D006589 3.0e-24 116.3 88 75.0
RcHm_v2.0_Chr6g0247511 Rosa chinensis HOM05D005315 ORTHO05D006589 9.7e-23 111.3 87 67.8
SHI20216 Sapria himalayana HOM05D005315 ORTHO05D006589 6.9e-21 105.1 170 39.4
SMO234G0054 Selaginella moellendorffii HOM05D005315 ORTHO05D006589 3.4e-20 102.8 127 48.0
BcaB02g07311 Brassica carinata HOM05D005315 ORTHO05D006589 1.8e-16 90.5 78 64.1
Cfa025660 Carpinus fangiana HOM05D005315 ORTHO05D006589 7.5e-07 58.5 204 27.9
Phvul.003G242000 Phaseolus vulgaris HOM05D006446 ORTHO05D007832 2.2e-06 57.0 143 28.0
Eucgr.H02068 Eucalyptus grandis HOM05D006446 ORTHO05D007832 3.7e-06 56.2 146 27.4
COL.COLO4_11449 Corchorus olitorius HOM05D006446 ORTHO05D007832 4.8e-06 55.8 147 27.2
Dinv26843 Davidia involucrata HOM05D006446 ORTHO05D007832 6.3e-06 55.5 136 29.4
THA.LOC104827244 Tarenaya hassleriana HOM05D006446 ORTHO05D007832 6.3e-06 55.5 181 27.6
EL10Ac6g15719 Beta vulgaris HOM05D006446 ORTHO05D007832 8.2e-06 55.1 136 29.4
CARHR280460 Cardamine hirsuta HOM05D006446 ORTHO05D007832 8.2e-06 55.1 169 27.2


User provided reference genes

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