Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0510941 Helianthus annuus HOM05D003502 ORTHO05D004250 1.8e-78 295.8 146 100.0
HanXRQChr05g0148851 Helianthus annuus HOM05D003502 ORTHO05D004250 4.5e-53 211.5 107 95.3
Lj3C889G13 Lonicera japonica HOM05D003502 ORTHO05D004250 1.1e-38 163.7 106 77.4
ECA246G0536 Erigeron canadensis HOM05D003502 ORTHO05D004250 4.1e-38 161.8 106 73.6
Actinidia38803 Actinidia chinensis HOM05D003502 ORTHO05D004250 5.3e-38 161.4 106 72.6
Rhsim03G0220800 Rhododendron simsii HOM05D003502 ORTHO05D004250 1.5e-37 159.8 112 67.0
CSS0027375 Camellia sinensis var. sinensis HOM05D003502 ORTHO05D004250 2.6e-37 159.1 106 72.6
CSS0032069 Camellia sinensis var. sinensis HOM05D003502 ORTHO05D004250 2.6e-37 159.1 106 72.6
Manes.08G163900 Manihot esculenta HOM05D003502 ORTHO05D004250 4.5e-37 158.3 106 69.8
Lsat_1_v5_gn_6_108521 Lactuca sativa HOM05D003502 ORTHO05D004250 7.7e-37 157.5 106 72.6
Potri.019G052500 Populus trichocarpa HOM05D003502 ORTHO05D004250 2.2e-36 156.0 106 67.9
Atru.chr8.760 Acer truncatum HOM05D003502 ORTHO05D004250 2.9e-36 155.6 106 70.8
MD07G1306200 Malus domestica HOM05D003502 ORTHO05D004250 2.9e-36 155.6 106 70.8
Sabra19G0056000 Salix brachista HOM05D003502 ORTHO05D004250 3.8e-36 155.2 106 67.9
Prupe.2G324200 Prunus persica HOM05D003502 ORTHO05D004250 5.0e-36 154.8 106 69.8
Cc02_g00380 Coffea canephora HOM05D003502 ORTHO05D004250 6.5e-36 154.5 104 70.2
RcHm_v2.0_Chr1g0383891 Rosa chinensis HOM05D003502 ORTHO05D004250 8.5e-36 154.1 106 68.9
vmacro06503 Vaccinium macrocarpon HOM05D003502 ORTHO05D004250 3.2e-35 152.1 106 69.8
Dinv29168 Davidia involucrata HOM05D003502 ORTHO05D004250 4.2e-35 151.8 106 68.9
MD01G1234000 Malus domestica HOM05D003502 ORTHO05D004250 4.2e-35 151.8 116 63.8
CiPaw.01G206800 Carya illinoinensis HOM05D003502 ORTHO05D004250 5.5e-35 151.4 106 67.9
CAN.G303.73 Capsicum annuum HOM05D003502 ORTHO05D004250 7.2e-35 151.0 106 70.8
Thecc.10G089300 Theobroma cacao HOM05D003502 ORTHO05D004250 9.4e-35 150.6 106 69.8
Glyma.10G118100 Glycine max HOM05D003502 ORTHO05D004250 1.2e-34 150.2 106 66.0
COL.COLO4_32890 Corchorus olitorius HOM05D003502 ORTHO05D004250 2.1e-34 149.4 106 67.0
DCAR_014574 Daucus carota HOM05D003502 ORTHO05D004250 2.7e-34 149.1 126 61.1
CsaV3_5G005350 Cucumis sativus L. HOM05D003502 ORTHO05D004250 4.6e-34 148.3 106 66.0
Glyma.20G069700 Glycine max HOM05D003502 ORTHO05D004250 4.6e-34 148.3 106 65.1
TWI60G0235 Tripterygium wilfordii HOM05D003502 ORTHO05D004250 4.6e-34 148.3 106 67.9
VMungo0720G2129 Vigna mungo HOM05D003502 ORTHO05D004250 6.1e-34 147.9 106 65.1
GSVIVG01024439001 Vitis vinifera HOM05D003502 ORTHO05D004250 6.1e-34 147.9 106 67.9
Cfa013318 Carpinus fangiana HOM05D003502 ORTHO05D004250 7.9e-34 147.5 101 69.3
Duzib114G0543 Durio zibethinus HOM05D003502 ORTHO05D004250 7.9e-34 147.5 106 65.1
QL06p046981 Quercus lobata HOM05D003502 ORTHO05D004250 7.9e-34 147.5 106 67.0
MELO3C005424.2 Cucumis melo HOM05D003502 ORTHO05D004250 1.0e-33 147.1 106 65.1
Sopen03g027640 Solanum pennellii HOM05D003502 ORTHO05D004250 1.0e-33 147.1 106 67.9
Ca_25960_v3 Cicer arietinum L. HOM05D003502 ORTHO05D004250 1.4e-33 146.7 107 63.6
CANSAT56G1789 Cannabis sativa HOM05D003502 ORTHO05D004250 1.8e-33 146.4 106 67.0
Nitab4.5_0005081g0060 Nicotiana tabacum HOM05D003502 ORTHO05D004250 1.8e-33 146.4 106 67.9
Nitab4.5_0000021g0390 Nicotiana tabacum HOM05D003502 ORTHO05D004250 2.3e-33 146.0 106 68.9
TPR.G19134 Trifolium pratense HOM05D003502 ORTHO05D004250 2.3e-33 146.0 106 65.1
Haze_16219 Corylus avellana HOM05D003502 ORTHO05D004250 3.9e-33 145.2 101 68.3
Phvul.007G241300 Phaseolus vulgaris HOM05D003502 ORTHO05D004250 6.7e-33 144.4 106 63.2
Ciclev10000035m.g Citrus clementina HOM05D003502 ORTHO05D004250 8.8e-33 144.1 106 67.9
Lj6g0010845 Lotus japonicus HOM05D003502 ORTHO05D004250 8.8e-33 144.1 106 66.0
Oeu010168.1 Olea europaea HOM05D003502 ORTHO05D004250 8.8e-33 144.1 104 64.4
Sed0005246 Sechium edule HOM05D003502 ORTHO05D004250 8.8e-33 144.1 106 65.1
arahy.Tifrunner.gnm1.ann1.FUJ27D Arachis hypogaea HOM05D003502 ORTHO05D004250 1.1e-32 143.7 106 66.0
arahy.Tifrunner.gnm1.ann1.KF4QTS Arachis hypogaea HOM05D003502 ORTHO05D004250 1.1e-32 143.7 106 66.0
ClCG01G005070 Citrullus lanatus HOM05D003502 ORTHO05D004250 1.1e-32 143.7 106 64.2
FvH4_7g33760 Fragaria vesca HOM05D003502 ORTHO05D004250 1.1e-32 143.7 106 65.1
FAN03G0354 Fragaria x ananassa HOM05D003502 ORTHO05D004250 1.1e-32 143.7 106 65.1
FAN03G1761 Fragaria x ananassa HOM05D003502 ORTHO05D004250 1.1e-32 143.7 106 65.1
Sed0020646 Sechium edule HOM05D003502 ORTHO05D004250 1.1e-32 143.7 106 64.2
Psat6g094880 Pisum sativum HOM05D003502 ORTHO05D004250 1.5e-32 143.3 106 64.2
Eucgr.A02961 Eucalyptus grandis HOM05D003502 ORTHO05D004250 1.9e-32 142.9 106 65.1
Lalb_Chr01g0010621 Lupinus albus HOM05D003502 ORTHO05D004250 1.9e-32 142.9 106 63.2
THA.LOC104811354 Tarenaya hassleriana HOM05D003502 ORTHO05D004250 1.9e-32 142.9 106 62.3
BcaB04g17262 Brassica carinata HOM05D003502 ORTHO05D004250 2.5e-32 142.5 106 64.2
Aa31LG10G3970 Aethionema arabicum HOM05D003502 ORTHO05D004250 4.3e-32 141.7 106 63.2
FAN10G2252 Fragaria x ananassa HOM05D000067 ORTHO05D004250 5.7e-32 141.4 106 64.2
FAN10G2333 Fragaria x ananassa HOM05D003502 ORTHO05D004250 5.7e-32 141.4 106 64.2
Medtr1g048630 Medicago truncatula HOM05D003502 ORTHO05D004250 5.7e-32 141.4 106 64.2
FAN01G2009 Fragaria x ananassa HOM05D000067 ORTHO05D004250 9.7e-32 140.6 106 64.2
MBI04_g06222_MAGBIO Magnolia biondii HOM05D003502 ORTHO05D004250 9.7e-32 140.6 113 61.9
A08p03270 Brassica napus HOM05D003502 ORTHO05D004250 1.3e-31 140.2 106 63.2
C03p89540 Brassica napus HOM05D003502 ORTHO05D004250 1.3e-31 140.2 106 63.2
BolC3t21268H Brassica oleracea HOM05D003502 ORTHO05D004250 1.3e-31 140.2 106 63.2
BraA08t32360Z Brassica rapa HOM05D003502 ORTHO05D004250 1.3e-31 140.2 106 63.2
CARHR040300 Cardamine hirsuta HOM05D003502 ORTHO05D004250 1.3e-31 140.2 106 62.3
PSO384G3919 Papaver somniferum HOM05D003502 ORTHO05D004250 1.3e-31 140.2 106 60.4
BcaC01g01220 Brassica carinata HOM05D003502 ORTHO05D004250 1.7e-31 139.8 106 62.3
Nn1g07854 Nelumbo nucifera HOM05D003502 ORTHO05D004250 1.7e-31 139.8 106 64.2
Sp1g37070 Schrenkiella parvula HOM05D003502 ORTHO05D004250 2.2e-31 139.4 106 63.2
Gohir.A05G409100 Gossypium hirsutum HOM05D003502 ORTHO05D004250 2.8e-31 139.0 106 65.1
Gohir.D04G006300 Gossypium hirsutum HOM05D003502 ORTHO05D004250 2.8e-31 139.0 106 65.1
Gorai.012G007900 Gossypium raimondii HOM05D003502 ORTHO05D004250 2.8e-31 139.0 106 65.1
PSO339G0895 Papaver somniferum HOM05D003502 ORTHO05D004250 3.7e-31 138.7 106 59.4
PSO419G0001 Papaver somniferum HOM05D003502 ORTHO05D004250 3.7e-31 138.7 106 59.4
Aqoxy7G00566 Aquilegia oxysepala HOM05D003502 ORTHO05D004250 6.3e-31 137.9 106 64.2
AL1G57830 Arabidopsis lyrata HOM05D003502 ORTHO05D004250 1.1e-30 137.1 106 60.4
MSTRG.336 Avicennia marina HOM05D003502 ORTHO05D004250 1.4e-30 136.7 103 64.1
TAR624G1438 Trochodendron aralioides HOM05D003502 ORTHO05D004250 1.8e-30 136.3 94 70.2
CANSAT21G0253 Cannabis sativa HOM05D003502 ORTHO05D004250 2.4e-30 136.0 106 61.3
COL.COLO4_28859 Corchorus olitorius HOM05D003502 ORTHO05D004250 2.4e-30 136.0 101 63.4
AT1G50240 Arabidopsis thaliana HOM05D003502 ORTHO05D004250 4.1e-30 135.2 106 60.4
Migut.F01860 Erythranthe guttata HOM05D003502 ORTHO05D004250 4.1e-30 135.2 104 62.5
Thhalv10011182m.g Eutrema salsugineum HOM05D003502 ORTHO05D004250 5.3e-30 134.8 106 61.3
Prupe.3G137600 Prunus persica HOM05D003502 ORTHO05D004250 6.9e-30 134.4 105 64.8
PGR042G1531 Punica granatum HOM05D003502 ORTHO05D004250 6.9e-30 134.4 108 62.0
Carub.0001s3934 Capsella rubella HOM05D003502 ORTHO05D004250 1.5e-29 133.3 106 59.4
Cpa.g.c41347 Carica papaya HOM05D003502 ORTHO05D004250 2.0e-29 132.9 93 68.8
SalBow6G5501 Salvia bowleyana HOM05D003502 ORTHO05D004250 2.6e-29 132.5 104 61.5
SHI02505 Sapria himalayana HOM05D003502 ORTHO05D004250 3.4e-29 132.1 106 57.5
BcaC05g27448 Brassica carinata HOM05D003502 ORTHO05D004250 4.5e-29 131.7 106 60.4
BolC5t32137H Brassica oleracea HOM05D003502 ORTHO05D004250 4.5e-29 131.7 106 60.4
SGA_v2.0_scaffold283G47001 Striga asiatica HOM05D003502 ORTHO05D004250 1.3e-28 130.2 104 60.6
Ah.07g205720 Amaranthus hybridus HOM05D003502 ORTHO05D004250 3.8e-28 128.6 106 59.4
ATR0561G216 Amborella trichopoda HOM05D003502 ORTHO05D004250 1.1e-27 127.1 107 58.9
Hund20998 Selenicereus undatus HOM05D003502 ORTHO05D004250 2.5e-27 125.9 107 56.1
Lj2g0016050 Lotus japonicus HOM05D003502 ORTHO05D004250 4.2e-27 125.2 101 59.4
Sc06g0007830 Simmondsia chinensis HOM05D003502 ORTHO05D004250 7.2e-27 124.4 105 60.0
AUR62006100 Chenopodium quinoa HOM05D003502 ORTHO05D004250 1.2e-26 123.6 107 57.0
Cpa.g.c44189 Carica papaya HOM05D003502 ORTHO05D004250 3.6e-26 122.1 79 74.7
C05p34020 Brassica napus HOM05D003502 ORTHO05D004250 4.7e-26 121.7 97 61.9
EL10Ac3g05293 Beta vulgaris HOM05D003502 ORTHO05D004250 3.9e-25 118.6 107 55.1
AUR62019393 Chenopodium quinoa HOM05D003502 ORTHO05D004250 2.0e-24 116.3 107 54.2
Solyc03g096890.3 Solanum lycopersicum HOM05D003502 ORTHO05D004250 7.4e-24 114.4 85 65.9
Os12g0433500 Oryza sativa ssp. japonica HOM05D003502 ORTHO05D004250 8.2e-23 110.9 104 51.0
HPP92_008318 Vanilla planifolia HOM05D003502 ORTHO05D004250 4.1e-22 108.6 107 51.4
HanXRQChr05g0148841 Helianthus annuus HOM05D003502 ORTHO05D004250 7.0e-22 107.8 89 57.3
AUR62029697 Chenopodium quinoa HOM05D003502 ORTHO05D004250 2.6e-21 105.9 107 50.5
FvH4_5g14110 Fragaria vesca HOM05D003502 ORTHO05D004250 3.4e-21 105.5 77 67.5
SEGI_11487 Sequoiadendron giganteum HOM05D003502 ORTHO05D004250 3.4e-21 105.5 106 47.2
SEGI_34091 Sequoiadendron giganteum HOM05D003502 ORTHO05D004250 3.4e-21 105.5 106 47.2
Zm00001eb141360 Zea mays HOM05D003502 ORTHO05D004250 3.4e-21 105.5 106 48.1
Peaxi162Scf00745g00859 Petunia axillaris HOM05D003502 ORTHO05D004250 1.0e-20 104.0 77 67.5
CDE06G0840 Ceratophyllum demersum HOM05D000250 ORTHO05D002477 1.3e-20 103.6 101 50.5
Psat6g094760 Pisum sativum HOM05D003502 ORTHO05D004250 5.5e-19 98.2 77 61.0
ECA247G1432 Erigeron canadensis HOM05D003502 ORTHO05D004250 3.7e-15 85.5 112 40.2
Mapoly0102s0001 Marchantia polymorpha HOM05D003502 ORTHO05D004250 1.4e-14 83.6 102 41.2
AagrBONN_evm.TU.Sc2ySwM_344.1826 Anthoceros agrestis HOM05D003502 ORTHO05D004250 1.8e-14 83.2 102 42.2
Lj3C923G18 Lonicera japonica HOM05D003502 ORTHO05D004250 2.4e-14 82.8 54 72.2
HPP92_008321 Vanilla planifolia HOM05D003502 ORTHO05D004250 3.1e-14 82.4 79 54.4
Pp3c6_25960 Physcomitrium patens HOM05D003502 ORTHO05D004250 7.0e-14 81.3 104 40.4
ECA248G3707 Erigeron canadensis HOM05D003502 ORTHO05D004250 2.6e-13 79.3 65 61.5
EL10Ac1g00998 Beta vulgaris HOM05D003502 ORTHO05D004250 1.3e-12 77.0 80 51.2
Pp3c5_3010 Physcomitrium patens HOM05D003502 ORTHO05D004250 1.7e-12 76.6 104 39.4
CBR_g46859 Chara braunii HOM05D003502 ORTHO05D004250 1.3e-07 60.5 107 29.0
ECA248G0871 Erigeron canadensis HOM05D003502 ORTHO05D004250 1.1e-06 57.4 64 45.3
PRCOL_00004072 Prasinoderma coloniale HOM05D003502 ORTHO05D004250 1.4e-06 57.0 119 28.6
Actinidia21879 Actinidia chinensis HOM05D003502 ORTHO05D004250 7.0e-06 54.7 31 74.2


User provided reference genes

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