Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0505851 Helianthus annuus HOM05D001068 ORTHO05D222634 2.0e-59 232.3 120 100.0
HanXRQChr17g0565261 Helianthus annuus HOM05D001068 ORTHO05D002190 2.2e-13 79.3 70 65.7
ECA234G1381 Erigeron canadensis HOM05D001068 ORTHO05D002190 1.8e-12 76.3 70 64.3
Atru.chr6.2845 Acer truncatum HOM05D001068 ORTHO05D002190 4.1e-12 75.1 69 62.3
HanXRQChr16g0526381 Helianthus annuus HOM05D001068 ORTHO05D002190 4.1e-12 75.1 69 63.8
Lsat_1_v5_gn_4_28520 Lactuca sativa HOM05D001068 ORTHO05D002190 5.4e-12 74.7 69 63.8
ECA236G4578 Erigeron canadensis HOM05D001068 ORTHO05D002190 7.0e-12 74.3 69 62.3
PSO541G4864 Papaver somniferum HOM05D001068 ORTHO05D002190 7.0e-12 74.3 73 58.9
PSO675G3167 Papaver somniferum HOM05D001068 ORTHO05D002190 7.0e-12 74.3 73 58.9
CSS0000404 Camellia sinensis var. sinensis HOM05D001068 ORTHO05D002190 9.1e-12 73.9 69 62.3
CSS0049947 Camellia sinensis var. sinensis HOM05D001068 ORTHO05D002190 9.1e-12 73.9 69 62.3
TAR627G0187 Trochodendron aralioides HOM05D001068 ORTHO05D002190 9.1e-12 73.9 69 60.9
Sabra13G0102500 Salix brachista HOM05D001068 ORTHO05D002190 1.6e-11 73.2 70 58.6
Aqoxy1G02246_Aqoxy1G02247 Aquilegia oxysepala HOM05D001068 ORTHO05D002190 2.7e-11 72.4 73 54.8
COL.COLO4_04707 Corchorus olitorius HOM05D001068 ORTHO05D002190 2.7e-11 72.4 69 60.9
ECA234G0082 Erigeron canadensis HOM05D001068 ORTHO05D002190 2.7e-11 72.4 69 60.9
HanXRQChr17g0565241 Helianthus annuus HOM05D001068 ORTHO05D002190 2.7e-11 72.4 69 59.4
Rhsim06G0135500 Rhododendron simsii HOM05D001068 ORTHO05D002190 2.7e-11 72.4 69 60.9
SEGI_33260 Sequoiadendron giganteum HOM05D001068 ORTHO05D002190 3.5e-11 72.0 69 59.4
PGR142G0739 Punica granatum HOM05D001068 ORTHO05D002190 4.5e-11 71.6 69 58.0
Manes.12G092800 Manihot esculenta HOM05D001068 ORTHO05D002190 5.9e-11 71.2 69 58.0
EL10Ac9g20848 Beta vulgaris HOM05D001068 ORTHO05D002190 7.7e-11 70.9 70 60.0
Ciclev10014502m.g Citrus clementina HOM05D001068 ORTHO05D002190 7.7e-11 70.9 73 58.9
Duzib052G0179 Durio zibethinus HOM05D001068 ORTHO05D002190 7.7e-11 70.9 68 60.3
Nn1g04278 Nelumbo nucifera HOM05D001068 ORTHO05D002190 7.7e-11 70.9 69 58.0
vmacro12355 Vaccinium macrocarpon HOM05D001068 ORTHO05D002190 7.7e-11 70.9 69 59.4
AUR62036085 Chenopodium quinoa HOM05D001068 ORTHO05D002190 1.0e-10 70.5 69 58.0
SGA_v2.0_scaffold258G45790 Striga asiatica HOM05D001068 ORTHO05D002190 1.0e-10 70.5 69 59.4
GSVIVG01020650001 Vitis vinifera HOM05D001068 ORTHO05D002190 1.0e-10 70.5 69 58.0
ATR0602G078 Amborella trichopoda HOM05D001068 ORTHO05D002190 1.3e-10 70.1 73 53.4
A10p05020 Brassica napus HOM05D001068 ORTHO05D002190 1.3e-10 70.1 69 60.9
BolC5t29234H Brassica oleracea HOM05D001068 ORTHO05D002190 1.3e-10 70.1 69 60.9
BraA10t42768Z Brassica rapa HOM05D001068 ORTHO05D002190 1.3e-10 70.1 69 60.9
AUR62035387 Chenopodium quinoa HOM05D001068 ORTHO05D002190 1.3e-10 70.1 69 56.5
Dinv02425 Davidia involucrata HOM05D001068 ORTHO05D002190 1.3e-10 70.1 69 59.4
THA.LOC104800850 Tarenaya hassleriana HOM05D001068 ORTHO05D002190 1.3e-10 70.1 69 60.9
Thecc.02G188700 Theobroma cacao HOM05D001068 ORTHO05D002190 1.3e-10 70.1 69 58.0
arahy.Tifrunner.gnm1.ann1.C7HVNL Arachis hypogaea HOM05D001068 ORTHO05D002190 1.7e-10 69.7 68 58.8
arahy.Tifrunner.gnm1.ann1.JX5WJ5 Arachis hypogaea HOM05D001068 ORTHO05D002190 1.7e-10 69.7 68 58.8
Hund07851 Selenicereus undatus HOM05D001068 ORTHO05D002190 1.7e-10 69.7 69 56.5
SEGI_29810 Sequoiadendron giganteum HOM05D001068 ORTHO05D002190 2.3e-10 69.3 69 58.0
TWI59G1279 Tripterygium wilfordii HOM05D001068 ORTHO05D002190 2.3e-10 69.3 69 58.0
AT1G06290 Arabidopsis thaliana HOM05D001068 ORTHO05D002190 2.9e-10 68.9 69 60.9
CANSAT64G0075 Cannabis sativa HOM05D001068 ORTHO05D002190 2.9e-10 68.9 69 58.0
CsaV3_2G034560 Cucumis sativus L. HOM05D001068 ORTHO05D002190 2.9e-10 68.9 69 56.5
Hma1.2p1_0002F.1_g002410 Hydrangea macrophylla HOM05D001068 ORTHO05D002190 2.9e-10 68.9 69 56.5
MD17G1234100 Malus domestica HOM05D001068 ORTHO05D002190 2.9e-10 68.9 69 58.0
SEGI_21730 Sequoiadendron giganteum HOM05D001068 ORTHO05D002190 2.9e-10 68.9 69 56.5
Cpa.g.sc50.2 Carica papaya HOM05D001068 ORTHO05D002190 3.8e-10 68.6 69 56.5
Ca_18909_v3 Cicer arietinum L. HOM05D001068 ORTHO05D002190 3.8e-10 68.6 68 58.8
Duzib248G0800 Durio zibethinus HOM05D001068 ORTHO05D002190 3.8e-10 68.6 69 58.0
Gohir.A01G019900 Gossypium hirsutum HOM05D001068 ORTHO05D002190 3.8e-10 68.6 69 58.0
Gorai.002G020700 Gossypium raimondii HOM05D001068 ORTHO05D002190 3.8e-10 68.6 69 58.0
MBI07_g06445_MAGBIO Magnolia biondii HOM05D001068 ORTHO05D002190 3.8e-10 68.6 73 54.8
Ah.01g003900 Amaranthus hybridus HOM05D001068 ORTHO05D002190 5.0e-10 68.2 70 57.1
BcaC05g24286 Brassica carinata HOM05D001068 ORTHO05D002190 5.0e-10 68.2 69 59.4
C05p04620 Brassica napus HOM05D001068 ORTHO05D002190 5.0e-10 68.2 69 59.4
CAN.G782.15 Capsicum annuum HOM05D001068 ORTHO05D002190 5.0e-10 68.2 69 55.1
CARHR005870 Cardamine hirsuta HOM05D001068 ORTHO05D002190 5.0e-10 68.2 69 59.4
Gohir.A12G139700 Gossypium hirsutum HOM05D001068 ORTHO05D002190 5.0e-10 68.2 69 56.5
Gohir.D12G144200 Gossypium hirsutum HOM05D001068 ORTHO05D002190 5.0e-10 68.2 69 56.5
Gorai.002G020600 Gossypium raimondii HOM05D001068 ORTHO05D002190 5.0e-10 68.2 69 58.0
Gorai.008G155500 Gossypium raimondii HOM05D001068 ORTHO05D002190 5.0e-10 68.2 69 56.5
Lsat_1_v5_gn_4_28480 Lactuca sativa HOM05D001068 ORTHO05D002190 5.0e-10 68.2 69 55.1
Potri.019G092600 Populus trichocarpa HOM05D001068 ORTHO05D002190 5.0e-10 68.2 70 57.1
SMO266G0061 Selaginella moellendorffii HOM05D001068 ORTHO05D002190 5.0e-10 68.2 90 47.8
AL1G16310 Arabidopsis lyrata HOM05D001068 ORTHO05D002190 6.6e-10 67.8 69 59.4
BcaB02g06807 Brassica carinata HOM05D001068 ORTHO05D002190 6.6e-10 67.8 69 59.4
Eucgr.K01080 Eucalyptus grandis HOM05D001068 ORTHO05D002190 6.6e-10 67.8 69 55.1
Thhalv10006988m.g Eutrema salsugineum HOM05D001068 ORTHO05D002190 6.6e-10 67.8 69 59.4
FvH4_6g26900 Fragaria vesca HOM05D001068 ORTHO05D002190 6.6e-10 67.8 69 56.5
FAN05G5054 Fragaria x ananassa HOM05D001068 ORTHO05D002190 6.6e-10 67.8 69 56.5
FAN14G5876 Fragaria x ananassa HOM05D001068 ORTHO05D002190 6.6e-10 67.8 69 56.5
Gohir.A01G019800 Gossypium hirsutum HOM05D001068 ORTHO05D002190 6.6e-10 67.8 69 56.5
Nitab4.5_0002196g0050 Nicotiana tabacum HOM05D001068 ORTHO05D002190 6.6e-10 67.8 81 50.6
Nitab4.5_0005651g0020 Nicotiana tabacum HOM05D001068 ORTHO05D002190 6.6e-10 67.8 69 55.1
Oeu064840.1 Olea europaea HOM05D001068 ORTHO05D002190 6.6e-10 67.8 69 58.0
Potri.013G123500 Populus trichocarpa HOM05D001068 ORTHO05D002190 6.6e-10 67.8 69 56.5
Sp1g05100 Schrenkiella parvula HOM05D001068 ORTHO05D002190 6.6e-10 67.8 69 59.4
Solyc10g008110.4 Solanum lycopersicum HOM05D001068 ORTHO05D002190 6.6e-10 67.8 69 53.6
PGSC0003DMG400010548 Solanum tuberosum HOM05D001068 ORTHO05D002190 6.6e-10 67.8 69 53.6
ClCG02G010170 Citrullus lanatus HOM05D001068 ORTHO05D002190 8.6e-10 67.4 69 56.5
Glyma.12G120300 Glycine max HOM05D001068 ORTHO05D002190 8.6e-10 67.4 71 56.3
Carub.0001s0566 Capsella rubella HOM05D001068 ORTHO05D002190 1.1e-09 67.0 70 58.6
Cc05_g07930 Coffea canephora HOM05D001068 ORTHO05D002190 1.1e-09 67.0 69 56.5
Gohir.A03G153650 Gossypium hirsutum HOM05D001068 ORTHO05D002190 1.1e-09 67.0 69 56.5
Gohir.D02G176600 Gossypium hirsutum HOM05D001068 ORTHO05D002190 1.1e-09 67.0 69 56.5
Gorai.005G198300 Gossypium raimondii HOM05D001068 ORTHO05D002190 1.1e-09 67.0 69 56.5
Peaxi162Scf00241g01211 Petunia axillaris HOM05D001068 ORTHO05D002190 1.1e-09 67.0 70 55.7
Pp3c13_22370 Physcomitrium patens HOM05D001068 ORTHO05D002190 1.1e-09 67.0 69 55.1
Sopen10g003980 Solanum pennellii HOM05D001068 ORTHO05D002190 1.1e-09 67.0 69 53.6
Medtr4g079290 Medicago truncatula HOM05D001068 ORTHO05D002190 1.5e-09 66.6 68 57.4
Psat7g166960 Pisum sativum HOM05D001068 ORTHO05D002190 1.5e-09 66.6 71 56.3
RcHm_v2.0_Chr2g0128641 Rosa chinensis HOM05D001068 ORTHO05D002190 1.5e-09 66.6 69 56.5
TPR.G34856 Trifolium pratense HOM05D001068 ORTHO05D002190 1.5e-09 66.6 68 57.4
VMungo1127G1906 Vigna mungo HOM05D001068 ORTHO05D002190 1.5e-09 66.6 68 57.4
Haze_13278 Corylus avellana HOM05D001068 ORTHO05D002190 1.9e-09 66.2 69 55.1
Gohir.D01G018400 Gossypium hirsutum HOM05D001068 ORTHO05D002190 1.9e-09 66.2 69 56.5
Sed0001164 Sechium edule HOM05D001068 ORTHO05D002190 1.9e-09 66.2 69 55.1
Sed0007318 Sechium edule HOM05D001068 ORTHO05D002190 1.9e-09 66.2 69 55.1
Sc06g0009140 Simmondsia chinensis HOM05D001068 ORTHO05D002190 1.9e-09 66.2 70 52.9
Aa31LG1G7310 Aethionema arabicum HOM05D001068 ORTHO05D002190 2.5e-09 65.9 69 56.5
MELO3C019320.2 Cucumis melo HOM05D001068 ORTHO05D002190 2.5e-09 65.9 69 55.1
Sabra19G0105800 Salix brachista HOM05D001068 ORTHO05D002190 2.5e-09 65.9 69 55.1
HPP92_027388 Vanilla planifolia HOM05D001068 ORTHO05D002190 2.5e-09 65.9 73 50.7
VMungo1127G1013 Vigna mungo HOM05D001068 ORTHO05D002190 2.5e-09 65.9 68 55.9
VMungo1127G1678 Vigna mungo HOM05D001068 ORTHO05D002190 2.5e-09 65.9 68 55.9
Migut.M00195 Erythranthe guttata HOM05D001068 ORTHO05D002190 3.3e-09 65.5 69 56.5
Lj8A106G57 Lonicera japonica HOM05D001068 ORTHO05D002190 3.3e-09 65.5 70 54.3
Pp3c26_540 Physcomitrium patens HOM05D001068 ORTHO05D002190 3.3e-09 65.5 69 53.6
AL1G16320 Arabidopsis lyrata HOM05D001068 ORTHO05D002190 4.2e-09 65.1 69 55.1
AT1G06310 Arabidopsis thaliana HOM05D001068 ORTHO05D002190 4.2e-09 65.1 69 55.1
Lalb_Chr03g0029731 Lupinus albus HOM05D001068 ORTHO05D002190 4.2e-09 65.1 68 52.9
Cfa014679 Carpinus fangiana HOM05D001068 ORTHO05D002190 5.5e-09 64.7 69 53.6
Lj3g0024792 Lotus japonicus HOM05D001068 ORTHO05D002190 5.5e-09 64.7 68 57.4
AUR62036084 Chenopodium quinoa HOM05D001068 ORTHO05D002190 7.2e-09 64.3 69 53.6
DCAR_010695 Daucus carota HOM05D001068 ORTHO05D002190 7.2e-09 64.3 69 55.1
Glyma.06G285400 Glycine max HOM05D001068 ORTHO05D002190 7.2e-09 64.3 71 53.5
Gohir.D01G018500 Gossypium hirsutum HOM05D001068 ORTHO05D002190 7.2e-09 64.3 61 57.4
Phvul.011G116000 Phaseolus vulgaris HOM05D001068 ORTHO05D002190 7.2e-09 64.3 68 54.4
AagrBONN_evm.TU.Sc2ySwM_362.999 Anthoceros agrestis HOM05D001068 ORTHO05D002190 9.5e-09 63.9 69 53.6
A10p05050 Brassica napus HOM05D001068 ORTHO05D002190 9.5e-09 63.9 69 55.1
BraA10t42771Z Brassica rapa HOM05D001068 ORTHO05D002190 9.5e-09 63.9 69 55.1
CiPaw.03G183200 Carya illinoinensis HOM05D001068 ORTHO05D002190 9.5e-09 63.9 69 53.6
DCAR_009762 Daucus carota HOM05D001068 ORTHO05D002190 9.5e-09 63.9 69 53.6
Mapoly0007s0119 Marchantia polymorpha HOM05D001068 ORTHO05D002190 9.5e-09 63.9 69 52.2
Prupe.3G127000 Prunus persica HOM05D001068 ORTHO05D002190 9.5e-09 63.9 69 52.2
SalBow7G1339 Salvia bowleyana HOM05D001068 ORTHO05D002190 1.2e-08 63.5 69 56.5
Hund00993 Selenicereus undatus HOM05D001068 ORTHO05D002190 1.2e-08 63.5 69 52.2
Zm00001eb148110 Zea mays HOM05D001068 ORTHO05D002190 1.2e-08 63.5 73 50.7
BcaB02g06804 Brassica carinata HOM05D001068 ORTHO05D002190 1.6e-08 63.2 69 53.6
Oeu000573.1 Olea europaea HOM05D001068 ORTHO05D002190 1.6e-08 63.2 69 53.6
Actinidia10988 Actinidia chinensis HOM05D001068 ORTHO05D002190 2.1e-08 62.8 69 58.0
DCAR_021268 Daucus carota HOM05D001068 ORTHO05D002190 2.8e-08 62.4 69 53.6
BcaB02g06788 Brassica carinata HOM05D001068 ORTHO05D002190 3.6e-08 62.0 69 52.2
Thhalv10009440m.g Eutrema salsugineum HOM05D001068 ORTHO05D002190 4.7e-08 61.6 90 44.4
Lj3g0009326 Lotus japonicus HOM05D001068 ORTHO05D002190 4.7e-08 61.6 71 50.7
CDE08G0847 Ceratophyllum demersum HOM05D001068 ORTHO05D002190 6.1e-08 61.2 69 52.2
Oeu000574.1 Olea europaea HOM05D001068 ORTHO05D002190 6.1e-08 61.2 69 53.6
Sed0014357 Sechium edule HOM05D001068 ORTHO05D002190 6.1e-08 61.2 69 49.3
BcaC05g24275 Brassica carinata HOM05D001068 ORTHO05D002190 8.0e-08 60.8 69 53.6
C05p04640 Brassica napus HOM05D001068 ORTHO05D002190 8.0e-08 60.8 69 53.6
BolC5t29237H Brassica oleracea HOM05D001068 ORTHO05D002190 8.0e-08 60.8 69 53.6
Os06g0354500 Oryza sativa ssp. japonica HOM05D001068 ORTHO05D002190 8.0e-08 60.8 73 46.6
BolC5t29403H Brassica oleracea HOM05D001068 ORTHO05D002190 3.0e-07 58.9 69 50.7
BcaC05g24284 Brassica carinata HOM05D001068 ORTHO05D002190 2.0e-06 56.2 86 45.3
BcaB02g06806 Brassica carinata HOM05D001068 ORTHO05D002190 3.4e-06 55.5 62 53.2
Actinidia11120 Actinidia chinensis HOM05D001068 ORTHO05D002190 5.7e-06 54.7 66 50.0


User provided reference genes

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