Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0505521 Helianthus annuus HOM05D002484 ORTHO05D002541 5.3e-51 204.1 109 100.0
HanXRQChr16g0505511 Helianthus annuus HOM05D002484 ORTHO05D002541 4.2e-48 194.5 109 87.2
Lsat_1_v5_gn_5_65860 Lactuca sativa HOM05D002484 ORTHO05D002541 7.0e-43 177.2 103 80.6
ECA236G2706 Erigeron canadensis HOM05D002484 ORTHO05D002541 2.6e-42 175.3 92 88.0
HanXRQChr16g0505831 Helianthus annuus HOM05D002484 ORTHO05D002541 1.0e-38 163.3 90 82.2
ECA236G3870 Erigeron canadensis HOM05D002484 ORTHO05D002541 1.2e-34 149.8 93 76.3
HanXRQChr16g0506041 Helianthus annuus HOM05D002484 ORTHO05D002541 9.5e-24 113.6 78 64.1
Lsat_1_v5_gn_7_90221 Lactuca sativa HOM05D002484 ORTHO05D002541 1.2e-23 113.2 80 68.8
ECA236G2297 Erigeron canadensis HOM05D002484 ORTHO05D002541 8.9e-22 107.1 78 60.3
TWI75G1456 Tripterygium wilfordii HOM05D002484 ORTHO05D002541 1.7e-20 102.8 84 57.1
Atru.chr5.3052 Acer truncatum HOM05D002484 ORTHO05D002541 1.8e-19 99.4 82 59.8
HanXRQChr16g0505861 Helianthus annuus HOM05D018786 ORTHO05D002541 1.8e-19 99.4 88 58.0
DCAR_028974 Daucus carota HOM05D002484 ORTHO05D002541 2.4e-19 99.0 82 61.0
Atru.chr5.3054 Acer truncatum HOM05D002484 ORTHO05D002541 9.2e-19 97.1 85 55.3
HanXRQChr16g0505571 Helianthus annuus HOM05D002484 ORTHO05D002541 1.2e-18 96.7 81 60.5
AT1G19610 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 1.7e-17 92.8 78 52.6
AL1G32330 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 2.3e-17 92.4 78 52.6
BcaB03g12908 Brassica carinata HOM05D002484 ORTHO05D002541 5.0e-17 91.3 77 54.5
BraA08t34910Z Brassica rapa HOM05D002484 ORTHO05D002541 8.6e-17 90.5 77 54.5
Thhalv10009242m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 8.6e-17 90.5 78 52.6
HanXRQChr16g0505531 Helianthus annuus HOM05D002484 ORTHO05D220526 1.1e-16 90.1 88 53.4
Carub.0001s1915 Capsella rubella HOM05D002484 ORTHO05D002541 1.5e-16 89.7 78 51.3
COL.COLO4_25964 Corchorus olitorius HOM05D002484 ORTHO05D002541 1.5e-16 89.7 82 53.7
Lsat_1_v5_gn_7_90281 Lactuca sativa HOM05D002484 ORTHO05D002541 1.5e-16 89.7 59 64.4
PSO302G0221 Papaver somniferum HOM05D018786 ORTHO05D002541 1.9e-16 89.4 86 47.7
BolC8t49576H Brassica oleracea HOM05D002484 ORTHO05D002541 2.5e-16 89.0 78 50.0
DCAR_001564 Daucus carota HOM05D002484 ORTHO05D002541 2.5e-16 89.0 81 56.8
TWI79G0221 Tripterygium wilfordii HOM05D002484 ORTHO05D002541 2.5e-16 89.0 72 54.2
Sp1g17450 Schrenkiella parvula HOM05D002484 ORTHO05D002541 4.3e-16 88.2 78 50.0
HanXRQChr03g0074221 Helianthus annuus HOM05D002484 ORTHO05D002541 7.3e-16 87.4 83 44.6
HanXRQChr03g0074231 Helianthus annuus HOM05D002484 ORTHO05D002541 7.3e-16 87.4 83 44.6
HanXRQChr03g0074241 Helianthus annuus HOM05D002484 ORTHO05D002541 7.3e-16 87.4 83 44.6
FAN20G2159 Fragaria x ananassa HOM05D002484 ORTHO05D002541 1.2e-15 86.7 85 50.6
Sed0028225 Sechium edule HOM05D002484 ORTHO05D002541 1.2e-15 86.7 79 51.9
Peaxi162Scf00324g00715 Petunia axillaris HOM05D002484 ORTHO05D002541 2.1e-15 85.9 81 50.6
Migut.N00483 Erythranthe guttata HOM05D002484 ORTHO05D002541 2.8e-15 85.5 67 50.7
ECA236G3295 Erigeron canadensis HOM05D002484 ORTHO05D002541 6.1e-15 84.3 82 52.4
ECA236G4765 Erigeron canadensis HOM05D002484 ORTHO05D002541 6.1e-15 84.3 82 53.7
FvH4_2g11470 Fragaria vesca HOM05D002484 ORTHO05D002541 8.0e-15 84.0 78 50.0
HanXRQChr04g0128041 Helianthus annuus HOM05D002484 ORTHO05D002541 8.0e-15 84.0 73 47.9
Peaxi162Scf00324g00722 Petunia axillaris HOM05D002484 ORTHO05D002541 8.0e-15 84.0 81 49.4
HanXRQChr16g0505541 Helianthus annuus HOM05D002484 ORTHO05D002541 1.0e-14 83.6 83 54.2
HanXRQChr16g0505561 Helianthus annuus HOM05D002484 ORTHO05D002541 1.0e-14 83.6 83 54.2
Lsat_1_v5_gn_7_90580 Lactuca sativa HOM05D002484 ORTHO05D002541 1.0e-14 83.6 60 60.0
Aa31LG7G4230 Aethionema arabicum HOM05D002484 ORTHO05D002541 1.4e-14 83.2 52 63.5
Nn3g20428 Nelumbo nucifera HOM05D002484 ORTHO05D002541 1.4e-14 83.2 81 50.6
ATR1149G048 Amborella trichopoda HOM05D002484 ORTHO05D002541 1.8e-14 82.8 68 54.4
Lsat_1_v5_gn_7_90181 Lactuca sativa HOM05D002484 ORTHO05D002541 2.3e-14 82.4 90 46.7
Lsat_1_v5_gn_7_90700 Lactuca sativa HOM05D002484 ORTHO05D002541 2.3e-14 82.4 57 59.6
Peaxi162Scf00324g00716 Petunia axillaris HOM05D002484 ORTHO05D002541 2.3e-14 82.4 83 49.4
Actinidia27667 Actinidia chinensis HOM05D002484 ORTHO05D002541 3.0e-14 82.0 80 55.0
COL.COLO4_25966 Corchorus olitorius HOM05D002484 ORTHO05D002541 3.0e-14 82.0 80 48.8
FAN20G1957 Fragaria x ananassa HOM05D002484 ORTHO05D002541 3.0e-14 82.0 68 50.0
Thecc.02G082200 Theobroma cacao HOM05D002484 ORTHO05D002541 3.0e-14 82.0 78 46.2
DCAR_028972 Daucus carota HOM05D002484 ORTHO05D002541 6.8e-14 80.9 81 48.1
HanXRQChr16g0505921 Helianthus annuus HOM05D018786 ORTHO05D002541 8.9e-14 80.5 92 44.6
RcHm_v2.0_Chr6g0301471 Rosa chinensis HOM05D002484 ORTHO05D002541 1.2e-13 80.1 68 48.5
PGR031G2841 Punica granatum HOM05D002484 ORTHO05D002541 1.5e-13 79.7 67 50.7
BcaC08g46653 Brassica carinata HOM05D002484 ORTHO05D002541 3.4e-13 78.6 54 57.4
C06p46130 Brassica napus HOM05D002484 ORTHO05D002541 3.4e-13 78.6 54 57.4
BolC6t39666H Brassica oleracea HOM05D002484 ORTHO05D002541 3.4e-13 78.6 54 57.4
Lsat_1_v5_gn_7_90800 Lactuca sativa HOM05D002484 ORTHO05D002541 4.4e-13 78.2 61 49.2
Prupe.1G376000 Prunus persica HOM05D002484 ORTHO05D002541 4.4e-13 78.2 84 45.2
BcaB03g14925 Brassica carinata HOM05D002484 ORTHO05D002541 1.7e-12 76.3 80 47.5
AL7G45400 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 2.2e-12 75.9 78 46.2
ECA236G0419 Erigeron canadensis HOM05D002484 ORTHO05D002541 2.2e-12 75.9 84 50.0
TWI56G0984 Tripterygium wilfordii HOM05D002484 ORTHO05D002541 2.9e-12 75.5 75 48.0
BcaC08g43338 Brassica carinata HOM05D002484 ORTHO05D002541 4.9e-12 74.7 76 50.0
BraA07t31386Z Brassica rapa HOM05D002484 ORTHO05D002541 4.9e-12 74.7 86 41.9
ECA236G0027 Erigeron canadensis HOM05D002484 ORTHO05D002541 6.4e-12 74.3 55 50.9
MELO3C018229.2 Cucumis melo HOM05D002484 ORTHO05D002541 1.9e-11 72.8 77 49.4
Carub.0007s0108 Capsella rubella HOM05D002484 ORTHO05D002541 2.4e-11 72.4 78 41.0
COL.COLO4_25963 Corchorus olitorius HOM05D002484 ORTHO05D002541 4.1e-11 71.6 77 44.2
Psat4g203560 Pisum sativum HOM05D002484 ORTHO05D002541 4.1e-11 71.6 78 46.2
CsaV3_3G044510 Cucumis sativus L. HOM05D002484 ORTHO05D002541 5.4e-11 71.2 77 48.1
Solyc01g011495.1 Solanum lycopersicum HOM05D002484 ORTHO05D002541 5.4e-11 71.2 78 48.7
MD08G1027500 Malus domestica HOM05D002484 ORTHO05D002541 7.0e-11 70.9 52 51.9
Medtr8g012805 Medicago truncatula HOM05D002484 ORTHO05D002541 7.0e-11 70.9 81 48.1
Psat4g203640 Pisum sativum HOM05D002484 ORTHO05D002541 7.0e-11 70.9 79 48.1
Nitab4.5_0000023g0340 Nicotiana tabacum HOM05D002484 ORTHO05D002541 1.2e-10 70.1 78 46.2
Ciclev10030125m.g Citrus clementina HOM05D002484 ORTHO05D002541 2.7e-10 68.9 78 41.0
Glyma.18G027700 Glycine max HOM05D002484 ORTHO05D002541 2.7e-10 68.9 49 59.2
Aqoxy4G00457 Aquilegia oxysepala HOM05D002484 ORTHO05D002541 3.5e-10 68.6 79 45.6
A08p29750 Brassica napus HOM05D002484 ORTHO05D002541 3.5e-10 68.6 41 63.4
C08p19530 Brassica napus HOM05D002484 ORTHO05D002541 3.5e-10 68.6 41 63.4
Aqoxy5G01512 Aquilegia oxysepala HOM05D002484 ORTHO05D002541 4.6e-10 68.2 79 43.0
Carub.0007s3201 Capsella rubella HOM05D002484 ORTHO05D002541 4.6e-10 68.2 79 43.0
PGR031G0268 Punica granatum HOM05D002484 ORTHO05D002541 4.6e-10 68.2 68 44.1
Thhalv10019398m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 6.0e-10 67.8 79 44.3
Medtr8g012835 Medicago truncatula HOM05D002484 ORTHO05D002541 6.0e-10 67.8 79 45.6
Ciclev10029712m.g Citrus clementina HOM05D002484 ORTHO05D002541 7.8e-10 67.4 82 41.5
Ciclev10029828m.g Citrus clementina HOM05D002484 ORTHO05D002541 7.8e-10 67.4 82 41.5
BcaC08g45552 Brassica carinata HOM05D002484 ORTHO05D002541 1.0e-09 67.0 79 43.0
C06p32340 Brassica napus HOM05D002484 ORTHO05D002541 1.0e-09 67.0 79 43.0
CARHR247530 Cardamine hirsuta HOM05D002484 ORTHO05D002541 1.0e-09 67.0 78 41.0
Lsat_1_v5_gn_7_90161 Lactuca sativa HOM05D002484 ORTHO05D002541 1.0e-09 67.0 52 53.8
Sp5g30950 Schrenkiella parvula HOM05D002484 ORTHO05D002541 1.0e-09 67.0 79 44.3
Solyc01g011435.1 Solanum lycopersicum HOM05D002484 ORTHO05D002541 1.3e-09 66.6 80 43.8
Solyc07g009260.3 Solanum lycopersicum HOM05D002484 ORTHO05D002541 1.3e-09 66.6 69 44.9
AT2G26010 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 1.7e-09 66.2 80 45.0
Lj3g0015575 Lotus japonicus HOM05D002484 ORTHO05D002541 1.7e-09 66.2 80 42.5
Medtr8g012795 Medicago truncatula HOM05D002484 ORTHO05D002541 1.7e-09 66.2 79 43.0
Carub.0002s2269 Capsella rubella HOM05D002484 ORTHO05D002541 2.3e-09 65.9 80 43.8
Carub.0002s2268 Capsella rubella HOM05D002484 ORTHO05D002541 3.0e-09 65.5 80 43.8
Atru.chr13.431 Acer truncatum HOM05D002484 ORTHO05D002541 3.9e-09 65.1 74 41.9
Atru.chr5.3053 Acer truncatum HOM05D002484 ORTHO05D002541 3.9e-09 65.1 57 52.6
A07p41390 Brassica napus HOM05D002484 ORTHO05D002541 3.9e-09 65.1 79 43.0
C06p32380 Brassica napus HOM05D002484 ORTHO05D002541 3.9e-09 65.1 79 41.8
BraA07t31672Z Brassica rapa HOM05D002484 ORTHO05D002541 3.9e-09 65.1 79 43.0
Carub.0002s2271 Capsella rubella HOM05D002484 ORTHO05D002541 3.9e-09 65.1 80 43.8
CAN.G1126.34 Capsicum annuum HOM05D002484 ORTHO05D002541 3.9e-09 65.1 69 43.5
FAN20G0586 Fragaria x ananassa HOM05D002484 ORTHO05D002541 3.9e-09 65.1 82 42.7
Carub.0002s2270 Capsella rubella HOM05D002484 ORTHO05D002541 5.0e-09 64.7 80 43.8
Thecc.08G031200 Theobroma cacao HOM05D002484 ORTHO05D002541 5.0e-09 64.7 53 49.1
BcaB02g07044 Brassica carinata HOM05D002484 ORTHO05D002541 6.6e-09 64.3 79 43.0
BcaC08g45554 Brassica carinata HOM05D002484 ORTHO05D002541 6.6e-09 64.3 75 40.0
BcaC08g45556 Brassica carinata HOM05D002484 ORTHO05D002541 6.6e-09 64.3 75 40.0
Duzib093G0380 Durio zibethinus HOM05D002484 ORTHO05D002541 6.6e-09 64.3 48 54.2
Duzib248G1325 Durio zibethinus HOM05D001795 ORTHO05D002541 6.6e-09 64.3 56 48.2
Thhalv10019399m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 6.6e-09 64.3 79 41.8
Aqoxy4G00455 Aquilegia oxysepala HOM05D002484 ORTHO05D002541 8.6e-09 63.9 53 50.9
AL2G35830 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 8.6e-09 63.9 50 54.0
Actinidia25332 Actinidia chinensis HOM05D002484 ORTHO05D002541 1.5e-08 63.2 80 47.5
CAN.G559.4 Capsicum annuum HOM05D002484 ORTHO05D002541 1.5e-08 63.2 84 44.0
Prupe.8G071600 Prunus persica HOM05D002484 ORTHO05D002541 1.5e-08 63.2 82 45.1
Sp5g30970 Schrenkiella parvula HOM05D002484 ORTHO05D002541 1.9e-08 62.8 79 41.8
arahy.Tifrunner.gnm1.ann1.81M2S6 Arachis hypogaea HOM05D002484 ORTHO05D002541 2.5e-08 62.4 71 43.7
Thhalv10029442m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 2.5e-08 62.4 78 35.9
AL2G35840 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 3.3e-08 62.0 80 42.5
A07p41370 Brassica napus HOM05D002484 ORTHO05D002541 3.3e-08 62.0 75 42.7
BraA07t31670Z Brassica rapa HOM05D002484 ORTHO05D002541 3.3e-08 62.0 75 42.7
Thhalv10019395m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 3.3e-08 62.0 80 42.5
Medtr8g012775 Medicago truncatula HOM05D002484 ORTHO05D002541 3.3e-08 62.0 80 40.0
AT5G44430 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 4.3e-08 61.6 80 42.5
AT1G75830 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 5.6e-08 61.2 80 42.5
AT5G44420 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 7.3e-08 60.8 80 42.5
CARHR069280 Cardamine hirsuta HOM05D002484 ORTHO05D002541 7.3e-08 60.8 80 42.5
AT2G26020 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 9.5e-08 60.5 70 42.9
BolC6t38355H Brassica oleracea HOM05D002484 ORTHO05D002541 9.5e-08 60.5 80 41.2
Carub.0002s2272 Capsella rubella HOM05D002484 ORTHO05D002541 9.5e-08 60.5 80 42.5
Carub.0002s2274 Capsella rubella HOM05D002484 ORTHO05D002541 9.5e-08 60.5 80 41.2
A07p41360 Brassica napus HOM05D002484 ORTHO05D002541 1.2e-07 60.1 50 48.0
BraA07t31669Z Brassica rapa HOM05D002484 ORTHO05D002541 1.2e-07 60.1 50 48.0
CARHR069310 Cardamine hirsuta HOM05D002484 ORTHO05D002541 1.2e-07 60.1 80 42.5
Thhalv10000662m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 1.2e-07 60.1 78 41.0
Thhalv10019396m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 1.2e-07 60.1 50 50.0
Medtr8g012785 Medicago truncatula HOM05D002484 ORTHO05D002541 1.6e-07 59.7 53 50.9
Nitab4.5_0005600g0020 Nicotiana tabacum HOM05D002484 ORTHO05D002541 1.6e-07 59.7 65 44.6
AL7G11150 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 2.1e-07 59.3 79 40.5
A07p28700 Brassica napus HOM05D002484 ORTHO05D002541 2.1e-07 59.3 50 50.0
BraA07t30510Z Brassica rapa HOM05D002484 ORTHO05D002541 2.1e-07 59.3 50 50.0
Carub.0002s2273 Capsella rubella HOM05D002484 ORTHO05D002541 2.1e-07 59.3 80 41.2
CARHR069270 Cardamine hirsuta HOM05D002484 ORTHO05D002541 2.1e-07 59.3 80 40.0
Thhalv10019394m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 2.1e-07 59.3 71 46.5
Hma1.2p1_1051F.1_g252040 Hydrangea macrophylla HOM05D002484 ORTHO05D002541 2.1e-07 59.3 80 42.5
Nitab4.5_0000023g0290 Nicotiana tabacum HOM05D002484 ORTHO05D002541 2.1e-07 59.3 78 43.6
BcaB02g07045 Brassica carinata HOM05D002484 ORTHO05D002541 2.8e-07 58.9 80 42.5
BcaC03g15629 Brassica carinata HOM05D002484 ORTHO05D002541 2.8e-07 58.9 80 41.2
C02p33630 Brassica napus HOM05D002484 ORTHO05D002541 2.8e-07 58.9 80 41.2
BolC2t09341H Brassica oleracea HOM05D002484 ORTHO05D002541 2.8e-07 58.9 80 41.2
CARHR284300 Cardamine hirsuta HOM05D002484 ORTHO05D002541 2.8e-07 58.9 74 41.9
BcaC08g47074 Brassica carinata HOM05D002484 ORTHO05D002541 3.6e-07 58.5 75 41.3
CARHR069370 Cardamine hirsuta HOM05D002484 ORTHO05D002541 3.6e-07 58.5 80 41.2
BcaB05g24952 Brassica carinata HOM05D002484 ORTHO05D002541 4.7e-07 58.2 80 41.2
Carub.0007s0110 Capsella rubella HOM05D002484 ORTHO05D002541 4.7e-07 58.2 79 36.7
Medtr8g012800 Medicago truncatula HOM05D002484 ORTHO05D002541 4.7e-07 58.2 72 40.3
TPR.G11190 Trifolium pratense HOM05D002484 ORTHO05D002541 4.7e-07 58.2 68 44.1
TPR.G17112 Trifolium pratense HOM05D002484 ORTHO05D002541 4.7e-07 58.2 70 41.4
Thhalv10019397m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 6.2e-07 57.8 80 40.0
BcaC08g47321 Brassica carinata HOM05D002484 ORTHO05D002541 8.0e-07 57.4 80 41.2
A02p20270 Brassica napus HOM05D002484 ORTHO05D002541 8.0e-07 57.4 80 41.2
BraA02t07061Z Brassica rapa HOM05D002484 ORTHO05D002541 8.0e-07 57.4 80 41.2
C06p32330 Brassica napus HOM05D002484 ORTHO05D002541 1.1e-06 57.0 80 40.0
C06p49790 Brassica napus HOM05D002484 ORTHO05D002541 1.1e-06 57.0 80 41.2
HanXRQChr06g0182141 Helianthus annuus HOM05D002484 ORTHO05D002541 1.1e-06 57.0 84 41.7
Nitab4.5_0000023g0330 Nicotiana tabacum HOM05D002484 ORTHO05D002541 1.1e-06 57.0 95 40.0
A05p26930 Brassica napus HOM05D002484 ORTHO05D002541 1.8e-06 56.2 70 40.0
C01p00390 Brassica napus HOM05D002484 ORTHO05D002541 1.8e-06 56.2 70 40.0
BraA05t21573Z Brassica rapa HOM05D002484 ORTHO05D002541 1.8e-06 56.2 70 40.0
CARHR069320 Cardamine hirsuta HOM05D002484 ORTHO05D002541 1.8e-06 56.2 82 39.0
CARHR216420 Cardamine hirsuta HOM05D002484 ORTHO05D002541 1.8e-06 56.2 80 36.2
CARHR069380 Cardamine hirsuta HOM05D002484 ORTHO05D002541 2.3e-06 55.8 79 38.0
Lsat_1_v5_gn_7_90540 Lactuca sativa HOM05D002484 ORTHO05D233311 3.1e-06 55.5 81 40.7
Nitab4.5_0002537g0050 Nicotiana tabacum HOM05D024896 ORTHO05D011265 3.1e-06 55.5 66 42.4
BcaNung01275 Brassica carinata HOM05D002484 ORTHO05D002541 6.8e-06 54.3 53 41.5
Peaxi162Scf00324g00714 Petunia axillaris HOM05D024896 ORTHO05D002541 8.9e-06 53.9 77 33.8


User provided reference genes

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