Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0503681 Helianthus annuus HOM05D002578 ORTHO05D005154 2.1e-52 208.8 106 100.0
HanXRQChr00c0557g0575711 Helianthus annuus HOM05D002578 ORTHO05D005154 1.2e-23 113.2 89 69.7
Lsat_1_v5_gn_5_50461 Lactuca sativa HOM05D002578 ORTHO05D005154 4.6e-23 111.3 98 66.3
HanXRQChr16g0526141 Helianthus annuus HOM05D002578 ORTHO05D005154 7.8e-23 110.5 89 68.5
CAN.G424.95 Capsicum annuum HOM05D002578 ORTHO05D005154 2.3e-22 109.0 89 65.2
HanXRQChr14g0432301 Helianthus annuus HOM05D002578 ORTHO05D005154 3.3e-21 105.1 89 65.2
TAR375G1061 Trochodendron aralioides HOM05D002578 ORTHO05D005154 7.3e-21 104.0 89 61.8
DCAR_032524 Daucus carota HOM05D002578 ORTHO05D005154 9.5e-21 103.6 89 61.8
Lsat_1_v5_gn_5_168100 Lactuca sativa HOM05D002578 ORTHO05D005154 2.8e-20 102.1 86 65.1
Gohir.1Z049834 Gossypium hirsutum HOM05D002578 ORTHO05D005154 3.6e-20 101.7 89 59.6
Gohir.A12G024500 Gossypium hirsutum HOM05D002578 ORTHO05D005154 3.6e-20 101.7 89 59.6
Hma1.2p1_0298F.1_g117740 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 3.6e-20 101.7 89 60.7
Hma1.2p1_0818F.1_g223306 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 3.6e-20 101.7 89 60.7
CAN.G127.12 Capsicum annuum HOM05D002578 ORTHO05D005154 4.7e-20 101.3 89 60.7
CSS0047935 Camellia sinensis var. sinensis HOM05D002578 ORTHO05D005154 6.2e-20 100.9 89 59.6
Duzib026G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 8.1e-20 100.5 94 57.4
Duzib086G0007 Durio zibethinus HOM05D002578 ORTHO05D005154 8.1e-20 100.5 94 57.4
Duzib125G0004 Durio zibethinus HOM05D002578 ORTHO05D005154 8.1e-20 100.5 94 57.4
Duzib256G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 8.1e-20 100.5 94 57.4
Nitab4.5_0004430g0040 Nicotiana tabacum HOM05D002578 ORTHO05D005154 1.1e-19 100.1 89 60.7
ATCG00800 Arabidopsis thaliana HOM05D002578 ORTHO05D005154 1.8e-19 99.4 89 59.6
Gohir.D11G067600 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.8e-19 99.4 89 58.4
PGR111G0034 Punica granatum HOM05D002578 ORTHO05D005154 1.8e-19 99.4 90 58.9
BNapus_Darmor_BZH_scaffold_253p00370 Brassica napus HOM05D002578 ORTHO05D005154 3.1e-19 98.6 89 58.4
C03p38130 Brassica napus HOM05D002578 ORTHO05D005154 3.1e-19 98.6 89 58.4
BolSC29t60532H Brassica oleracea HOM05D002578 ORTHO05D005154 3.1e-19 98.6 89 58.4
BolSC35t60726H Brassica oleracea HOM05D002578 ORTHO05D005154 3.1e-19 98.6 89 58.4
BolSC56t61245H Brassica oleracea HOM05D002578 ORTHO05D005154 3.1e-19 98.6 89 58.4
BraA06t25386Z Brassica rapa HOM05D002578 ORTHO05D005154 3.1e-19 98.6 89 58.4
BraSC103t45443Z Brassica rapa HOM05D002578 ORTHO05D005154 3.1e-19 98.6 89 58.4
BraSC103t45487Z Brassica rapa HOM05D002578 ORTHO05D005154 3.1e-19 98.6 89 58.4
BraSC138t45551Z Brassica rapa HOM05D002578 ORTHO05D005154 3.1e-19 98.6 89 58.4
BraSC59t46568Z Brassica rapa HOM05D002578 ORTHO05D005154 3.1e-19 98.6 89 58.4
CARHR282270 Cardamine hirsuta HOM05D002578 ORTHO05D005154 3.1e-19 98.6 89 58.4
Hma1.2p1_0104F.1_g050140 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 3.1e-19 98.6 89 59.6
Gohir.A08G071000 Gossypium hirsutum HOM05D002578 ORTHO05D005154 4.0e-19 98.2 89 57.3
Thhalv10010706m.g Eutrema salsugineum HOM05D002578 ORTHO05D005154 6.8e-19 97.4 89 58.4
Gorai.010G148900 Gossypium raimondii HOM05D002578 ORTHO05D005154 1.5e-18 96.3 89 57.3
Sed0023475 Sechium edule HOM05D002578 ORTHO05D005154 1.5e-18 96.3 94 55.3
PSO548G0101 Papaver somniferum HOM05D002578 ORTHO05D005154 2.0e-18 95.9 89 57.3
Potri.012G047500 Populus trichocarpa HOM05D002578 ORTHO05D005154 2.6e-18 95.5 89 58.4
Hund29503 Selenicereus undatus HOM05D002578 ORTHO05D005154 5.8e-18 94.4 93 54.8
Eucgr.C03015 Eucalyptus grandis HOM05D002578 ORTHO05D005154 7.5e-18 94.0 84 59.5
Hund08206 Selenicereus undatus HOM05D002578 ORTHO05D005154 7.5e-18 94.0 95 55.8
Hund29530 Selenicereus undatus HOM05D002578 ORTHO05D005154 7.5e-18 94.0 95 55.8
SalBow1G1132 Salvia bowleyana HOM05D002578 ORTHO05D005154 9.8e-18 93.6 89 57.3
Cpa.g.sc0.194 Carica papaya HOM05D002578 ORTHO05D005154 1.3e-17 93.2 89 57.3
Hund28761 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.7e-17 92.8 90 56.7
HanXRQChr01g0020181 Helianthus annuus HOM05D002578 ORTHO05D005154 4.9e-17 91.3 78 66.7
HanXRQChr04g0127451 Helianthus annuus HOM05D002578 ORTHO05D005154 4.9e-17 91.3 78 66.7
HanXRQChr10g0284421 Helianthus annuus HOM05D002578 ORTHO05D005154 4.9e-17 91.3 78 66.7
HanXRQChr10g0318021 Helianthus annuus HOM05D002578 ORTHO05D005154 4.9e-17 91.3 78 66.7
HanXRQChr12g0369891 Helianthus annuus HOM05D002578 ORTHO05D005154 4.9e-17 91.3 78 66.7
HanXRQCPg0580221 Helianthus annuus HOM05D002578 ORTHO05D005154 4.9e-17 91.3 78 66.7
LjContig00318g0021445 Lotus japonicus HOM05D002578 ORTHO05D005154 1.4e-16 89.7 89 55.1
LjContig00319g0008344 Lotus japonicus HOM05D002578 ORTHO05D005154 1.4e-16 89.7 89 55.1
LjContig00319g0015839 Lotus japonicus HOM05D002578 ORTHO05D005154 1.4e-16 89.7 89 55.1
Lsat_1_v5_gn_3_22620 Lactuca sativa HOM05D002578 ORTHO05D005154 1.9e-16 89.4 78 65.4
Ah.10g027440 Amaranthus hybridus HOM05D002578 ORTHO05D005154 5.4e-16 87.8 82 59.8
Hund30213 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.2e-15 86.7 88 55.7
Nitab4.5_0013360g0010 Nicotiana tabacum HOM05D002578 ORTHO05D005154 1.6e-15 86.3 78 61.5
Solyc00g500034.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 2.7e-15 85.5 78 60.3
Lsat_1_v5_gn_3_113300 Lactuca sativa HOM05D002578 ORTHO05D005154 4.6e-15 84.7 78 62.8
Sed0004436 Sechium edule HOM05D002578 ORTHO05D005154 4.6e-15 84.7 94 53.2
arahy.Tifrunner.gnm1.ann1.I6CLRS Arachis hypogaea HOM05D002578 ORTHO05D005154 1.0e-14 83.6 90 54.4
arahy.Tifrunner.gnm1.ann1.ID3W56 Arachis hypogaea HOM05D002578 ORTHO05D005154 1.3e-14 83.2 92 52.2
arahy.Tifrunner.gnm1.ann1.R0YUWC Arachis hypogaea HOM05D002578 ORTHO05D005154 1.3e-14 83.2 92 52.2
Peaxi162Scf00299g00118 Petunia axillaris HOM05D002578 ORTHO05D005154 1.9e-13 79.3 78 59.0
arahy.Tifrunner.gnm1.ann1.YJ6L74 Arachis hypogaea HOM05D002578 ORTHO05D005154 2.5e-13 79.0 90 52.2
Oeu062830.1 Olea europaea HOM05D002578 ORTHO05D005154 5.6e-13 77.8 89 50.6
CAN.G134.2 Capsicum annuum HOM05D002578 ORTHO05D005154 7.3e-13 77.4 77 57.1
Migut.D01327 Erythranthe guttata HOM05D002578 ORTHO05D005154 3.6e-12 75.1 74 55.4
Medtr4g051410 Medicago truncatula HOM05D002578 ORTHO05D005154 1.8e-11 72.8 90 47.8
Zm00001eb039190 Zea mays HOM05D002578 ORTHO05D005154 4.0e-11 71.6 100 43.0
Zm00001eb097380 Zea mays HOM05D002578 ORTHO05D005154 4.0e-11 71.6 100 43.0
Zm00001eb115040 Zea mays HOM05D002578 ORTHO05D005154 4.0e-11 71.6 100 43.0
Zm00001eb434870 Zea mays HOM05D002578 ORTHO05D005154 4.0e-11 71.6 100 43.0
Zm00001eb435100 Zea mays HOM05D002578 ORTHO05D005154 4.0e-11 71.6 100 43.0
Zm00001eb435640 Zea mays HOM05D002578 ORTHO05D005154 4.0e-11 71.6 100 43.0
Zm00001eb437960 Zea mays HOM05D002578 ORTHO05D005154 4.0e-11 71.6 100 43.0
Zm00001eb439940 Zea mays HOM05D002578 ORTHO05D005154 4.0e-11 71.6 100 43.0
Zm00001eb439960 Zea mays HOM05D002578 ORTHO05D005154 4.0e-11 71.6 100 43.0
Zm00001eb440780 Zea mays HOM05D002578 ORTHO05D005154 4.0e-11 71.6 100 43.0
Sc25g0002070 Simmondsia chinensis HOM05D002578 ORTHO05D005154 5.2e-11 71.2 78 52.6
Nn4g25225 Nelumbo nucifera HOM05D002578 ORTHO05D005154 6.8e-11 70.9 49 73.5
Potri.017G072340 Populus trichocarpa HOM05D002578 ORTHO05D005154 4.4e-10 68.2 89 46.1
PGSC0003DMG400003499 Solanum tuberosum HOM05D002578 ORTHO05D005154 1.1e-08 63.5 61 55.7
Gohir.A09G101600 Gossypium hirsutum HOM05D002578 ORTHO05D005154 4.1e-08 61.6 37 75.7
Gorai.011G034100 Gossypium raimondii HOM05D002578 ORTHO05D005154 4.1e-08 61.6 37 75.7
Lalb_Chr17g0337521 Lupinus albus HOM05D002578 ORTHO05D005154 4.1e-08 61.6 40 75.0
Atru.chr11.440 Acer truncatum HOM05D002578 ORTHO05D005154 5.4e-08 61.2 54 61.1
CAN.G1078.3 Capsicum annuum HOM05D002578 ORTHO05D005154 5.4e-08 61.2 68 52.9
Solyc12g035880.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 5.4e-08 61.2 73 47.9
Gohir.D06G105066 Gossypium hirsutum HOM05D002578 ORTHO05D005154 7.1e-08 60.8 100 40.0
Gohir.A12G090125 Gossypium hirsutum HOM05D002578 ORTHO05D005154 9.2e-08 60.5 37 75.7
Sc16g0004460 Simmondsia chinensis HOM05D002578 ORTHO05D005154 1.2e-07 60.1 37 75.7
Psat4g046880 Pisum sativum HOM05D002578 ORTHO05D005154 3.5e-07 58.5 94 42.6
Gorai.012G056700 Gossypium raimondii HOM05D002578 ORTHO05D005154 6.0e-07 57.8 62 51.6
Medtr8g038470 Medicago truncatula HOM05D002578 ORTHO05D005154 6.0e-07 57.8 75 46.7
Aqoxy5G00925 Aquilegia oxysepala HOM05D002578 ORTHO05D005154 1.3e-06 56.6 55 54.5
Medtr0002s0790 Medicago truncatula HOM05D002578 ORTHO05D005154 1.7e-06 56.2 115 34.8
AL2G20530 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 3.0e-06 55.5 32 81.2
AL2G21750 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 3.0e-06 55.5 32 81.2
Lalb_Chr25g0282891 Lupinus albus HOM05D002578 ORTHO05D005154 3.9e-06 55.1 68 48.5
Gohir.D04G051050 Gossypium hirsutum HOM05D002578 ORTHO05D005154 6.6e-06 54.3 35 71.4


User provided reference genes

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