Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0501941 Helianthus annuus HOM05D005717 ORTHO05D007221 0.0e+00 1759.6 959 100.0
ECA232G0673 Erigeron canadensis HOM05D005717 ORTHO05D007221 0.0e+00 1363.6 1004 72.3
Lsat_1_v5_gn_4_112460 Lactuca sativa HOM05D005717 ORTHO05D007221 0.0e+00 1328.2 964 73.0
Lj5A138T57 Lonicera japonica HOM05D005717 ORTHO05D007221 0.0e+00 1258.4 977 71.2
Nitab4.5_0002805g0040 Nicotiana tabacum HOM05D005717 ORTHO05D007221 0.0e+00 1207.6 998 66.6
Nitab4.5_0000646g0340 Nicotiana tabacum HOM05D005717 ORTHO05D007221 0.0e+00 1196.0 997 66.2
GSVIVG01008170001 Vitis vinifera HOM05D005717 ORTHO05D007221 0.0e+00 1195.3 974 65.1
Actinidia24269 Actinidia chinensis HOM05D005717 ORTHO05D007221 0.0e+00 1192.6 973 66.8
Peaxi162Scf00017g03258 Petunia axillaris HOM05D005717 ORTHO05D007221 0.0e+00 1182.5 1006 64.8
QL10p021360 Quercus lobata HOM05D005717 ORTHO05D007221 0.0e+00 1177.5 956 66.2
Rhsim12G0147200 Rhododendron simsii HOM05D005717 ORTHO05D007221 0.0e+00 1164.4 964 64.6
Migut.D01493 Erythranthe guttata HOM05D005717 ORTHO05D007221 0.0e+00 1162.1 973 64.4
Dinv36820 Davidia involucrata HOM05D005717 ORTHO05D007221 0.0e+00 1161.0 978 66.7
MSTRG.9576 Avicennia marina HOM05D005717 ORTHO05D007221 0.0e+00 1159.4 976 65.5
Ciclev10018495m.g Citrus clementina HOM05D005717 ORTHO05D007221 0.0e+00 1157.9 956 66.3
CSS0018836 Camellia sinensis var. sinensis HOM05D005717 ORTHO05D007221 0.0e+00 1153.3 977 65.2
Sopen03g033760 Solanum pennellii HOM05D005717 ORTHO05D007221 0.0e+00 1152.5 1000 64.2
Cfa019855 Carpinus fangiana HOM05D005717 ORTHO05D007221 0.0e+00 1144.0 977 64.5
MELO3C017258.2 Cucumis melo HOM05D005717 ORTHO05D007221 0.0e+00 1140.9 954 63.9
Atru.chr9.636 Acer truncatum HOM05D005717 ORTHO05D007221 0.0e+00 1140.6 973 64.2
Cc04_g08130 Coffea canephora HOM05D005717 ORTHO05D007221 0.0e+00 1140.6 984 64.3
vmacro16471 Vaccinium macrocarpon HOM05D005717 ORTHO05D007221 0.0e+00 1139.4 996 63.0
CsaV3_1G003250 Cucumis sativus L. HOM05D005717 ORTHO05D007221 0.0e+00 1136.7 951 64.4
ClCG06G015370 Citrullus lanatus HOM05D005717 ORTHO05D007221 0.0e+00 1127.5 951 64.2
Sc04g0003990 Simmondsia chinensis HOM05D005717 ORTHO05D007221 0.0e+00 1122.5 970 64.6
SalBow1G6140 Salvia bowleyana HOM05D005717 ORTHO05D007221 0.0e+00 1120.1 1015 62.0
arahy.Tifrunner.gnm1.ann1.V6HMAT Arachis hypogaea HOM05D005717 ORTHO05D007221 0.0e+00 1119.4 954 63.5
Sabra12G0046300 Salix brachista HOM05D005717 ORTHO05D007221 0.0e+00 1115.1 980 62.8
Lj1g0015597 Lotus japonicus HOM05D005717 ORTHO05D007221 0.0e+00 1114.8 956 62.4
arahy.Tifrunner.gnm1.ann1.06HQ5Q Arachis hypogaea HOM05D005717 ORTHO05D007221 0.0e+00 1110.5 954 63.3
Haze_18548 Corylus avellana HOM05D005717 ORTHO05D007221 0.0e+00 1109.7 1055 59.6
Oeu031929.1 Olea europaea HOM05D005717 ORTHO05D007221 0.0e+00 1101.7 979 61.0
SGA_v2.0_scaffold42G16051 Striga asiatica HOM05D005717 ORTHO05D007221 0.0e+00 1100.5 959 63.5
Hund09972 Selenicereus undatus HOM05D005717 ORTHO05D007221 0.0e+00 1089.3 997 60.4
Lalb_Chr08g0235411 Lupinus albus HOM05D005717 ORTHO05D007221 0.0e+00 1088.9 949 62.8
PGSC0003DMG400024615 Solanum tuberosum HOM05D005717 ORTHO05D007221 0.0e+00 1087.8 991 62.1
TWI81G0191 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 0.0e+00 1087.4 965 63.8
TWI60G0681 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 0.0e+00 1086.2 946 62.5
TAR629G3288 Trochodendron aralioides HOM05D005717 ORTHO05D007221 0.0e+00 1076.6 964 62.4
Ah.11g047340 Amaranthus hybridus HOM05D005717 ORTHO05D007221 2.6e-311 1072.0 979 60.5
Nn4g23582 Nelumbo nucifera HOM05D005717 ORTHO05D007221 3.3e-311 1071.6 992 62.0
Sed0011544 Sechium edule HOM05D005717 ORTHO05D007221 4.6e-311 1071.2 956 58.6
MD14G1217300 Malus domestica HOM05D005717 ORTHO05D007221 7.9e-311 1070.5 984 61.5
Aqoxy3G00578 Aquilegia oxysepala HOM05D005717 ORTHO05D004235 9.8e-311 1070.1 951 62.8
EL10Ac5g11198 Beta vulgaris HOM05D005717 ORTHO05D007221 1.3e-310 1069.7 1024 58.6
Duzib205G0984 Durio zibethinus HOM05D005717 ORTHO05D007221 3.8e-310 1068.1 956 63.0
Thecc.03G110500 Theobroma cacao HOM05D005717 ORTHO05D007221 3.2e-309 1065.1 958 63.0
CiPaw.16G080600 Carya illinoinensis HOM05D005717 ORTHO05D007221 6.7e-307 1057.4 973 60.7
Duzib068G1379 Durio zibethinus HOM05D005717 ORTHO05D007221 2.5e-306 1055.4 947 62.8
DCAR_014013 Daucus carota HOM05D005717 ORTHO05D007221 5.7e-306 1054.3 1021 61.4
Potri.012G065200 Populus trichocarpa HOM05D005717 ORTHO05D007221 5.7e-306 1054.3 959 62.4
CANSAT80G2305 Cannabis sativa HOM05D005717 ORTHO05D007221 7.4e-306 1053.9 966 62.2
Manes.06G080000 Manihot esculenta HOM05D005717 ORTHO05D007221 1.5e-303 1046.2 956 62.6
AUR62039684 Chenopodium quinoa HOM05D005717 ORTHO05D007221 2.6e-303 1045.4 1005 57.9
Medtr2g059200 Medicago truncatula HOM05D005717 ORTHO05D007221 4.5e-303 1044.6 979 61.0
AUR62032150 Chenopodium quinoa HOM05D005717 ORTHO05D007221 2.9e-302 1042.0 996 57.9
TPR.G15323 Trifolium pratense HOM05D005717 ORTHO05D007221 9.4e-301 1036.9 926 62.2
Ca_26377_v3 Cicer arietinum L. HOM05D005717 ORTHO05D007221 7.9e-300 1033.9 964 59.9
Psat1g029000 Pisum sativum HOM05D005717 ORTHO05D007221 1.3e-297 1026.5 960 60.5
Gohir.A03G072200 Gossypium hirsutum HOM05D005717 ORTHO05D007221 2.8e-297 1025.4 956 61.0
Gorai.003G103900 Gossypium raimondii HOM05D005717 ORTHO05D007221 2.8e-297 1025.4 958 61.1
PGR044G0409 Punica granatum HOM05D005717 ORTHO05D007221 8.2e-297 1023.8 965 60.0
Gohir.D03G099000 Gossypium hirsutum HOM05D005717 ORTHO05D007221 1.8e-296 1022.7 956 61.2
MBI15_g42003_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 3.1e-296 1021.9 1015 58.6
VMungo1309G2787 Vigna mungo HOM05D005717 ORTHO05D007221 5.3e-296 1021.1 962 60.2
RcHm_v2.0_Chr7g0183891 Rosa chinensis HOM05D005717 ORTHO05D007221 1.2e-295 1020.0 974 60.3
MD06G1206600 Malus domestica HOM05D005717 ORTHO05D007221 3.5e-295 1018.5 975 59.9
CDE01G0371 Ceratophyllum demersum HOM05D005717 ORTHO05D007221 7.7e-295 1017.3 974 58.1
Solyc03g114690.4 Solanum lycopersicum HOM05D005717 ORTHO05D007221 3.8e-294 1015.0 874 64.8
Eucgr.K02631 Eucalyptus grandis HOM05D005717 ORTHO05D007221 1.4e-291 1006.5 969 59.1
Dinv38628 Davidia involucrata HOM05D005717 ORTHO05D007221 3.9e-291 1005.0 973 59.6
Prupe.5G211000 Prunus persica HOM05D005717 ORTHO05D007221 1.1e-290 1003.4 957 60.5
Phvul.009G204400 Phaseolus vulgaris HOM05D005717 ORTHO05D007221 1.6e-287 993.0 952 58.9
Glyma.06G206800 Glycine max HOM05D005717 ORTHO05D007221 2.9e-286 988.8 972 59.1
Glyma.04G158400 Glycine max HOM05D005717 ORTHO05D007221 2.1e-284 982.6 968 58.7
FvH4_5g13280 Fragaria vesca HOM05D005717 ORTHO05D007221 2.7e-284 982.2 970 58.8
FAN13G2659 Fragaria x ananassa HOM05D005717 ORTHO05D007221 3.6e-284 981.9 956 59.1
unitig_578.g15938 Utricularia gibba HOM05D005717 ORTHO05D007221 1.4e-283 979.9 964 57.2
FAN08G0926 Fragaria x ananassa HOM05D005717 ORTHO05D007221 5.2e-283 978.0 981 58.3
FAN18G3426 Fragaria x ananassa HOM05D005717 ORTHO05D007221 9.8e-282 973.8 981 58.0
Carub.0005s0880 Capsella rubella HOM05D005717 ORTHO05D007221 1.3e-270 936.8 956 55.6
Cpa.g.sc3.215 Carica papaya HOM05D005717 ORTHO05D007221 8.0e-268 927.5 950 53.5
PSO478G4609 Papaver somniferum HOM05D005717 ORTHO05D007221 4.4e-266 921.8 1012 54.2
PSO017G2079 Papaver somniferum HOM05D005717 ORTHO05D007221 4.4e-258 895.2 1014 53.6
Os09g0241100 Oryza sativa ssp. japonica HOM05D005717 ORTHO05D007221 2.9e-257 892.5 1008 51.9
AL5G20890 Arabidopsis lyrata HOM05D005717 ORTHO05D007221 6.4e-249 864.8 960 53.8
ATR0691G143 Amborella trichopoda HOM05D005717 ORTHO05D007221 8.6e-246 854.4 893 54.3
Thhalv10016196m.g Eutrema salsugineum HOM05D005717 ORTHO05D007221 2.5e-245 852.8 957 53.0
Sp5g17930 Schrenkiella parvula HOM05D005717 ORTHO05D007221 7.3e-245 851.3 953 52.8
SpUn0079_0020 Schrenkiella parvula HOM05D005717 ORTHO05D007221 7.3e-245 851.3 953 52.8
THA.LOC104804979 Tarenaya hassleriana HOM05D005717 ORTHO05D007221 1.2e-242 844.0 962 51.6
CARHR153710 Cardamine hirsuta HOM05D005717 ORTHO05D007221 9.9e-242 840.9 956 52.4
BolC3t19078H Brassica oleracea HOM05D005717 ORTHO05D007221 1.1e-240 837.4 952 52.0
C03p68460 Brassica napus HOM05D005717 ORTHO05D007221 2.4e-240 836.3 953 51.8
BcaB01g01238 Brassica carinata HOM05D005717 ORTHO05D007221 3.2e-240 835.9 964 51.5
BcaC01g02114 Brassica carinata HOM05D005717 ORTHO05D007221 5.4e-240 835.1 952 51.9
A06p22690 Brassica napus HOM05D005717 ORTHO05D007221 7.1e-240 834.7 952 51.8
BraA06t25353Z Brassica rapa HOM05D005717 ORTHO05D007221 1.2e-239 833.9 947 51.7
AT3G42660 Arabidopsis thaliana HOM05D005717 ORTHO05D007221 1.6e-239 833.6 964 52.2
Aa31LG4G13310 Aethionema arabicum HOM05D005717 ORTHO05D007221 3.5e-239 832.4 832 57.2
Zm00001eb308160 Zea mays HOM05D005717 ORTHO05D007221 1.3e-230 803.9 769 56.8
SEGI_19386 Sequoiadendron giganteum HOM05D005717 ORTHO05D007221 1.2e-226 790.8 980 48.8
AagrBONN_evm.TU.Sc2ySwM_344.3979 Anthoceros agrestis HOM05D005717 ORTHO05D007221 4.6e-199 699.1 840 50.1
Mapoly0112s0022 Marchantia polymorpha HOM05D005717 ORTHO05D007221 1.4e-171 607.8 946 42.5
SHI19002 Sapria himalayana HOM05D005717 ORTHO05D007221 1.8e-171 607.4 598 59.4
SMO201G0059 Selaginella moellendorffii HOM05D005717 ORTHO05D007221 1.7e-153 547.7 815 42.0
HPP92_020490 Vanilla planifolia HOM05D005717 ORTHO05D007221 9.5e-152 542.0 504 60.1
CBR_g19153 Chara braunii HOM05D005717 ORTHO05D007221 1.6e-135 488.0 810 37.9
Pp3c26_14490 Physcomitrium patens HOM05D005717 ORTHO05D007221 1.9e-128 464.5 411 55.0
HPP92_020489 Vanilla planifolia HOM05D005717 ORTHO05D007221 2.9e-124 450.7 474 54.6
PRCOL_00001230 Prasinoderma coloniale HOM05D005717 ORTHO05D007221 8.7e-97 359.4 779 32.5
MCO04G151 Micromonas commoda HOM05D005717 ORTHO05D007221 4.3e-96 357.1 860 30.8
Lsat_1_v5_gn_5_133280 Lactuca sativa HOM05D005717 ORTHO05D007221 6.0e-90 336.7 320 58.4
Lsat_1_v5_gn_4_132261 Lactuca sativa HOM05D005717 ORTHO05D007221 1.1e-83 315.8 265 61.9
Cre16.g652950 Chlamydomonas reinhardtii HOM05D005717 ORTHO05D007221 4.3e-80 303.9 884 27.8
Peaxi162Scf00417g01311 Petunia axillaris HOM05D005717 ORTHO05D007221 3.4e-69 267.7 514 39.5
SHI19003 Sapria himalayana HOM05D005717 ORTHO05D007221 1.4e-67 262.3 368 46.2
Peaxi162Scf00417g01333 Petunia axillaris HOM05D005717 ORTHO05D007221 2.2e-55 221.9 172 65.7
Actinidia04786 Actinidia chinensis HOM05D005717 ORTHO05D007221 2.9e-36 158.3 392 34.4
Lsat_1_v5_gn_4_12100 Lactuca sativa HOM05D005717 ORTHO05D007221 1.4e-33 149.4 110 65.5
Actinidia04785 Actinidia chinensis HOM05D005717 ORTHO05D007221 2.6e-24 118.6 67 82.1
Medtr8g432590 Medicago truncatula HOM05D005717 ORTHO05D007221 4.9e-23 114.4 82 67.1
C03p68400 Brassica napus HOM05D005717 ORTHO05D007221 6.2e-18 97.4 90 57.8
Medtr2g090685 Medicago truncatula HOM05D005717 ORTHO05D007221 1.4e-17 96.3 66 71.2
BolC3t19074H Brassica oleracea HOM05D005717 ORTHO05D007221 1.8e-17 95.9 90 56.7
A06p22750 Brassica napus HOM05D005717 ORTHO05D007221 6.4e-15 87.4 93 53.8
Hma1.2p1_0733F.1_g210250 Hydrangea macrophylla HOM05D005717 ORTHO05D007221 6.4e-15 87.4 186 39.8
BraA06t25356Z Brassica rapa HOM05D005717 ORTHO05D007221 1.4e-14 86.3 90 55.6
MBI16_g18971_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 1.4e-14 86.3 155 38.1
AUR62037337 Chenopodium quinoa HOM05D006312 ORTHO05D007843 8.9e-09 67.0 37 83.8
Cre13.g575950 Chlamydomonas reinhardtii HOM05D003901 ORTHO05D004511 7.1e-06 57.4 169 27.2
SalBow2G0244 Salvia bowleyana HOM05D004669 ORTHO05D005767 7.1e-06 57.4 177 26.6
Mapoly0001s0052 Marchantia polymorpha HOM05D005151 ORTHO05D006322 9.2e-06 57.0 195 25.1


User provided reference genes

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