Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0495611 Helianthus annuus HOM05D003520 ORTHO05D003332 4.0e-292 1007.7 629 100.0
HanXRQChr09g0253501 Helianthus annuus HOM05D003520 ORTHO05D003332 4.4e-41 173.7 263 53.2
Lj2C195G2 Lonicera japonica HOM05D003520 ORTHO05D003332 1.1e-28 132.5 197 39.1
Actinidia02028 Actinidia chinensis HOM05D003520 ORTHO05D003332 1.3e-24 119.0 236 35.2
Dinv37667 Davidia involucrata HOM05D003520 ORTHO05D003332 2.2e-24 118.2 207 37.2
Actinidia14538 Actinidia chinensis HOM05D003520 ORTHO05D003332 1.6e-22 112.1 245 33.5
Aqoxy7G00385 Aquilegia oxysepala HOM05D003520 ORTHO05D003332 1.0e-21 109.4 207 35.3
Oeu049557.4 Olea europaea HOM05D003520 ORTHO05D003332 1.0e-21 109.4 284 32.0
TAR629G1002 Trochodendron aralioides HOM05D003520 ORTHO05D003332 4.3e-20 104.0 224 34.4
Lsat_1_v5_gn_0_29760 Lactuca sativa HOM05D003520 ORTHO05D003332 1.6e-19 102.1 465 31.0
TAR375G0279 Trochodendron aralioides HOM05D003520 ORTHO05D003332 2.8e-19 101.3 187 35.8
ECA232G0949 Erigeron canadensis HOM05D012625 ORTHO05D003332 4.8e-19 100.5 192 45.3
Gorai.008G278300 Gossypium raimondii HOM05D003520 ORTHO05D003332 8.2e-19 99.8 174 38.5
CiPaw.04G065200 Carya illinoinensis HOM05D003520 ORTHO05D003332 1.1e-18 99.4 196 37.8
Gohir.A12G258600 Gossypium hirsutum HOM05D003520 ORTHO05D003332 1.4e-18 99.0 174 37.9
Rhsim07G0193900 Rhododendron simsii HOM05D003520 ORTHO05D003332 1.4e-18 99.0 236 34.3
Ciclev10004647m.g Citrus clementina HOM05D003520 ORTHO05D003332 3.4e-17 94.4 151 43.0
Ciclev10018609m.g Citrus clementina HOM05D003520 ORTHO05D003332 4.5e-17 94.0 261 31.8
DCAR_008413 Daucus carota HOM05D003520 ORTHO05D003332 7.6e-17 93.2 219 30.6
Sabra15G0150800 Salix brachista HOM05D003520 ORTHO05D003332 1.3e-16 92.4 181 33.7
Cfa008307 Carpinus fangiana HOM05D003520 ORTHO05D003332 1.4e-15 89.0 520 24.4
ClCG01G002970 Citrullus lanatus HOM05D003520 ORTHO05D003332 1.4e-15 89.0 243 30.5
Rhsim07G0193800 Rhododendron simsii HOM05D003520 ORTHO05D003332 3.2e-15 87.8 194 31.4
Duzib084G0866 Durio zibethinus HOM05D003520 ORTHO05D003332 9.3e-15 86.3 204 31.4
Prupe.5G094800 Prunus persica HOM05D003520 ORTHO05D003332 2.1e-14 85.1 221 31.7
FAN08G2904 Fragaria x ananassa HOM05D003520 ORTHO05D003332 2.7e-14 84.7 248 30.6
Thecc.03G174900 Theobroma cacao HOM05D003520 ORTHO05D003332 4.6e-14 84.0 287 30.3
FAN18G3894 Fragaria x ananassa HOM05D003520 ORTHO05D003332 6.0e-14 83.6 243 29.2
TWI14G1277 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 1.8e-13 82.0 135 37.0
Cfa012135 Carpinus fangiana HOM05D003520 ORTHO05D003332 2.3e-13 81.6 214 32.2
CiPaw.11G138700 Carya illinoinensis HOM05D003520 ORTHO05D003332 3.0e-13 81.3 176 33.5
Duzib084G0697 Durio zibethinus HOM05D006981 ORTHO05D008719 3.0e-13 81.3 163 35.0
CsaV3_3G017000 Cucumis sativus L. HOM05D003520 ORTHO05D003332 3.9e-13 80.9 180 28.3
FvH4_5g01860 Fragaria vesca HOM05D003520 ORTHO05D003332 3.9e-13 80.9 247 28.7
FAN04G1936 Fragaria x ananassa HOM05D003520 ORTHO05D003332 5.1e-13 80.5 248 29.4
FAN13G1265 Fragaria x ananassa HOM05D003520 ORTHO05D003332 5.1e-13 80.5 248 29.4
THA.LOC104800257 Tarenaya hassleriana HOM05D012366 ORTHO05D003332 5.1e-13 80.5 84 46.4
GSVIVG01019812001 Vitis vinifera HOM05D000016 ORTHO05D000109 5.1e-13 80.5 246 30.1
MSTRG.1884 Avicennia marina HOM05D003520 ORTHO05D003332 6.7e-13 80.1 231 31.2
COL.COLO4_14291 Corchorus olitorius HOM05D003520 ORTHO05D003332 8.7e-13 79.7 582 24.6
Manes.14G027100 Manihot esculenta HOM05D003520 ORTHO05D003332 1.5e-12 79.0 126 42.1
QL09p014562 Quercus lobata HOM05D003520 ORTHO05D003332 1.5e-12 79.0 257 27.2
Atru.chr9.1567 Acer truncatum HOM05D003520 ORTHO05D000037 1.9e-12 78.6 250 32.4
Duzib205G1602 Durio zibethinus HOM05D003520 ORTHO05D003332 1.9e-12 78.6 271 28.4
Sopen03g004790 Solanum pennellii HOM05D012625 ORTHO05D003332 2.5e-12 78.2 174 33.9
Solyc03g025970.3 Solanum lycopersicum HOM05D012625 ORTHO05D003332 3.3e-12 77.8 174 33.9
Dinv38981 Davidia involucrata HOM05D003520 ORTHO05D003332 4.3e-12 77.4 166 33.7
MD01G1199300 Malus domestica HOM05D003520 ORTHO05D003332 7.4e-12 76.6 201 29.4
PSO782G5503 Papaver somniferum HOM05D003520 ORTHO05D003332 7.4e-12 76.6 250 31.2
Lj2g0020727 Lotus japonicus HOM05D003520 ORTHO05D003332 9.7e-12 76.3 233 28.3
Haze_13728 Corylus avellana HOM05D003520 ORTHO05D003332 1.3e-11 75.9 532 24.1
Dinv28454 Davidia involucrata HOM05D003520 ORTHO05D003332 1.3e-11 75.9 86 45.3
PSO478G3392 Papaver somniferum HOM05D003520 ORTHO05D003332 1.3e-11 75.9 248 30.6
QL12p017888 Quercus lobata HOM05D003520 ORTHO05D003332 1.3e-11 75.9 192 29.2
Eucgr.K00243 Eucalyptus grandis HOM05D003520 ORTHO05D003332 2.2e-11 75.1 140 35.0
PGSC0003DMG400014327 Solanum tuberosum HOM05D012625 ORTHO05D003332 2.2e-11 75.1 204 30.9
SGA_v2.0_scaffold144G35962 Striga asiatica HOM05D003520 ORTHO05D003332 2.8e-11 74.7 92 42.4
arahy.Tifrunner.gnm1.ann1.RT2UP8 Arachis hypogaea HOM05D003520 ORTHO05D003332 3.7e-11 74.3 216 29.2
Cc02_g03140 Coffea canephora HOM05D003520 ORTHO05D003332 4.8e-11 73.9 193 31.1
Lsat_1_v5_gn_6_86841 Lactuca sativa HOM05D003520 ORTHO05D003332 4.8e-11 73.9 182 32.4
Lj4g0003069 Lotus japonicus HOM05D003520 ORTHO05D003332 6.3e-11 73.6 93 41.9
Rhsim07G0092500 Rhododendron simsii HOM05D003520 ORTHO05D003332 6.3e-11 73.6 197 33.0
Hund11497 Selenicereus undatus HOM05D003520 ORTHO05D003332 6.3e-11 73.6 266 28.6
CiPaw.04G065400 Carya illinoinensis HOM05D003520 ORTHO05D003332 8.2e-11 73.2 65 52.3
Phvul.002G287000 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 8.2e-11 73.2 74 45.9
CSS0014139 Camellia sinensis var. sinensis HOM05D003520 ORTHO05D003332 1.8e-10 72.0 70 47.1
Sed0005114 Sechium edule HOM05D003520 ORTHO05D003332 1.8e-10 72.0 222 27.5
Lalb_Chr16g0389811 Lupinus albus HOM05D003520 ORTHO05D003332 2.4e-10 71.6 259 26.3
SalBow1G4878 Salvia bowleyana HOM05D003520 ORTHO05D003332 2.4e-10 71.6 74 45.9
CAN.G1704.2 Capsicum annuum HOM05D012625 ORTHO05D003332 3.1e-10 71.2 176 32.4
Carub.0008s1232 Capsella rubella HOM05D012366 ORTHO05D003332 4.1e-10 70.9 113 38.9
CsaV3_5G003080 Cucumis sativus L. HOM05D003520 ORTHO05D003332 4.1e-10 70.9 546 22.9
Nitab4.5_0003604g0010 Nicotiana tabacum HOM05D003520 ORTHO05D003332 4.1e-10 70.9 62 50.0
AUR62016000 Chenopodium quinoa HOM05D025484 ORTHO05D003332 5.3e-10 70.5 127 41.7
Potri.012G138300 Populus trichocarpa HOM05D003520 ORTHO05D003332 6.9e-10 70.1 100 39.0
GSVIVG01010547001 Vitis vinifera HOM05D003520 ORTHO05D003332 9.0e-10 69.7 237 30.8
Gohir.D12G259800 Gossypium hirsutum HOM05D003520 ORTHO05D003332 1.2e-09 69.3 174 32.8
HanXRQChr03g0084491 Helianthus annuus HOM05D003520 ORTHO05D003332 1.2e-09 69.3 197 27.9
Lsat_1_v5_gn_6_86801 Lactuca sativa HOM05D003520 ORTHO05D003332 1.2e-09 69.3 242 28.1
MD06G1076800 Malus domestica HOM05D003520 ORTHO05D003332 1.2e-09 69.3 237 28.3
VMungo1215G1122 Vigna mungo HOM05D003520 ORTHO05D003332 1.2e-09 69.3 527 21.8
Hma1.2p1_0514F.1_g169820 Hydrangea macrophylla HOM05D003520 ORTHO05D003332 1.5e-09 68.9 58 50.0
Nitab4.5_0003154g0060 Nicotiana tabacum HOM05D003520 ORTHO05D003332 1.5e-09 68.9 66 45.5
Potri.015G140100 Populus trichocarpa HOM05D003520 ORTHO05D003332 1.5e-09 68.9 80 42.5
SGA_v2.0_scaffold385G50464 Striga asiatica HOM05D003520 ORTHO05D003332 1.5e-09 68.9 99 37.4
ClCG05G007960 Citrullus lanatus HOM05D003520 ORTHO05D003332 2.6e-09 68.2 186 28.0
Migut.E01117 Erythranthe guttata HOM05D003520 ORTHO05D003332 3.4e-09 67.8 84 42.9
VMungo0464G1159 Vigna mungo HOM05D003520 ORTHO05D003332 3.4e-09 67.8 188 26.6
CARHR265160 Cardamine hirsuta HOM05D012366 ORTHO05D003332 4.5e-09 67.4 85 42.4
Zm00001eb430800 Zea mays HOM05D023145 ORTHO05D003332 4.5e-09 67.4 97 38.1
CiPaw.03G105100 Carya illinoinensis HOM05D003520 ORTHO05D003332 7.7e-09 66.6 121 35.5
HanXRQChr13g0416181 Helianthus annuus HOM05D003520 ORTHO05D003332 7.7e-09 66.6 188 26.1
Lsat_1_v5_gn_6_101581 Lactuca sativa HOM05D003520 ORTHO05D003332 7.7e-09 66.6 227 27.3
vmacro13942 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 7.7e-09 66.6 202 27.2
CAN.G859.7 Capsicum annuum HOM05D003520 ORTHO05D003332 1.0e-08 66.2 62 46.8
COL.COLO4_34422 Corchorus olitorius HOM05D003520 ORTHO05D003332 1.0e-08 66.2 97 41.2
RcHm_v2.0_Chr7g0198661 Rosa chinensis HOM05D003520 ORTHO05D003332 1.3e-08 65.9 126 36.5
TPR.G12816 Trifolium pratense HOM05D003520 ORTHO05D003332 1.3e-08 65.9 247 24.7
Atru.chr1.477_Atru.chr1.478 Acer truncatum HOM05D003520 ORTHO05D003332 1.7e-08 65.5 155 33.5
Medtr8g096930 Medicago truncatula HOM05D003520 ORTHO05D003332 1.7e-08 65.5 255 24.7
Nitab4.5_0001508g0010 Nicotiana tabacum HOM05D012625 ORTHO05D003332 1.7e-08 65.5 81 38.3
PGR142G4230 Punica granatum HOM05D003520 ORTHO05D003332 2.2e-08 65.1 141 33.3
Phvul.004G117900 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 2.9e-08 64.7 277 28.5
Solyc08g080690.4 Solanum lycopersicum HOM05D003520 ORTHO05D003332 2.9e-08 64.7 120 32.5
Sopen08g029000 Solanum pennellii HOM05D003520 ORTHO05D003332 2.9e-08 64.7 120 32.5
MBI17_g21053_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 3.8e-08 64.3 68 51.5
MD14G1098200 Malus domestica HOM05D003520 ORTHO05D003332 3.8e-08 64.3 232 28.4
Nn6g33544 Nelumbo nucifera HOM05D003520 ORTHO05D003332 3.8e-08 64.3 114 36.8
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 5.0e-08 63.9 193 30.6
Ca_17554_v3 Cicer arietinum L. HOM05D003520 ORTHO05D003332 5.0e-08 63.9 232 27.2
Migut.F00353 Erythranthe guttata HOM05D003520 ORTHO05D003332 5.0e-08 63.9 257 25.7
DCAR_020242 Daucus carota HOM05D003520 ORTHO05D003332 6.5e-08 63.5 201 28.9
Ah.07g207320 Amaranthus hybridus HOM05D025484 ORTHO05D017259 1.9e-07 62.0 51 58.8
AT5G52230 Arabidopsis thaliana HOM05D012366 ORTHO05D003332 2.5e-07 61.6 276 27.5
Gohir.A11G021700 Gossypium hirsutum HOM05D003520 ORTHO05D003332 2.5e-07 61.6 95 35.8
Thecc.03G274800 Theobroma cacao HOM05D003520 ORTHO05D003332 2.5e-07 61.6 254 26.0
Gohir.D11G021400 Gossypium hirsutum HOM05D003520 ORTHO05D003332 3.2e-07 61.2 115 31.3
Gorai.007G022700 Gossypium raimondii HOM05D003520 ORTHO05D003332 3.2e-07 61.2 115 31.3
Manes.02G024900 Manihot esculenta HOM05D003520 ORTHO05D003332 3.2e-07 61.2 257 26.8
Psat7g035760 Pisum sativum HOM05D003520 ORTHO05D003332 3.2e-07 61.2 91 35.2
MBI18_g01149_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 7.2e-07 60.1 221 27.6
Sc13g0008550 Simmondsia chinensis HOM05D025484 ORTHO05D003332 9.4e-07 59.7 71 45.1
Cc08_g14270 Coffea canephora HOM05D003520 ORTHO05D003332 1.6e-06 58.9 104 40.4
arahy.Tifrunner.gnm1.ann1.D6ZH50 Arachis hypogaea HOM05D003520 ORTHO05D003332 2.1e-06 58.5 177 28.8
Zm00001eb171140 Zea mays HOM05D023145 ORTHO05D003332 2.1e-06 58.5 86 37.2
ECA240G0038 Erigeron canadensis HOM05D003520 ORTHO05D003332 2.7e-06 58.2 133 32.3
vmacro13941 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 2.7e-06 58.2 109 33.9
Aa31LG3G8610 Aethionema arabicum HOM05D012366 ORTHO05D003332 4.6e-06 57.4 94 37.2
Peaxi162Scf00714g00124 Petunia axillaris HOM05D003520 ORTHO05D003332 6.1e-06 57.0 271 27.3
vmacro06696 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 6.1e-06 57.0 34 70.6
MSTRG.27123 Avicennia marina HOM05D003520 ORTHO05D003332 7.9e-06 56.6 47 55.3
Glyma.05G205100 Glycine max HOM05D003520 ORTHO05D003332 7.9e-06 56.6 116 29.3
Glyma.08G012000 Glycine max HOM05D003520 ORTHO05D003332 7.9e-06 56.6 117 30.8
Nitab4.5_0000716g0220 Nicotiana tabacum HOM05D012625 ORTHO05D003332 7.9e-06 56.6 432 25.9


User provided reference genes

Program Settings