Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0492741 Helianthus annuus HOM05D005820 ORTHO05D007116 0.0e+00 1407.9 709 100.0
ECA232G1869 Erigeron canadensis HOM05D005820 ORTHO05D007116 1.7e-307 1058.9 723 75.8
ECA233G1554 Erigeron canadensis HOM05D005820 ORTHO05D007116 4.3e-303 1044.3 707 75.1
Lsat_1_v5_gn_9_46201 Lactuca sativa HOM05D005820 ORTHO05D007116 4.8e-294 1014.2 712 72.8
CSS0036845 Camellia sinensis var. sinensis HOM05D005820 ORTHO05D007116 4.6e-212 741.9 718 57.1
DCAR_020431 Daucus carota HOM05D005820 ORTHO05D007116 4.3e-210 735.3 722 56.8
Atru.chr12.1871 Acer truncatum HOM05D005820 ORTHO05D007116 1.2e-207 727.2 722 54.6
Cfa016076 Carpinus fangiana HOM05D005820 ORTHO05D007116 6.4e-206 721.5 723 53.8
Atru.chr13.1435 Acer truncatum HOM05D005820 ORTHO05D007116 1.1e-205 720.7 727 54.3
CiPaw.05G212600 Carya illinoinensis HOM05D005820 ORTHO05D007116 1.1e-205 720.7 725 54.3
Potri.013G077200 Populus trichocarpa HOM05D005820 ORTHO05D007116 2.8e-201 706.1 738 51.4
Nn3g21157 Nelumbo nucifera HOM05D005820 ORTHO05D007116 8.2e-201 704.5 728 53.0
TAR633G0012 Trochodendron aralioides HOM05D005820 ORTHO05D007116 2.4e-200 703.0 725 52.7
QL09p020654 Quercus lobata HOM05D005820 ORTHO05D007116 4.9e-198 695.3 717 52.9
TWI53G1480 Tripterygium wilfordii HOM05D005820 ORTHO05D007116 3.0e-195 686.0 724 52.5
Gohir.D03G055100 Gossypium hirsutum HOM05D005820 ORTHO05D007116 5.7e-194 681.8 731 52.9
Gorai.003G057900 Gossypium raimondii HOM05D005820 ORTHO05D007116 2.2e-193 679.9 731 52.9
TAR365G1123 Trochodendron aralioides HOM05D005820 ORTHO05D007116 4.5e-191 672.2 725 50.8
TAR365G1018 Trochodendron aralioides HOM05D005820 ORTHO05D007116 5.0e-190 668.7 725 51.3
Aqoxy2G01900 Aquilegia oxysepala HOM05D005820 ORTHO05D007116 4.2e-189 665.6 732 50.4
Duzib106G1003 Durio zibethinus HOM05D005820 ORTHO05D007116 4.2e-189 665.6 721 51.2
Cc10_g10830 Coffea canephora HOM05D005820 ORTHO05D007116 1.6e-188 663.7 736 49.7
Peaxi162Scf00046g02624 Petunia axillaris HOM05D005820 ORTHO05D007116 2.3e-187 659.8 727 50.9
MSTRG.19155 Avicennia marina HOM05D005820 ORTHO05D007116 3.3e-186 656.0 731 50.2
Gohir.A02G125300 Gossypium hirsutum HOM05D005820 ORTHO05D007116 3.3e-186 656.0 668 54.5
Sopen12g007200 Solanum pennellii HOM05D005820 ORTHO05D007116 2.4e-184 649.8 730 50.8
Solyc12g013880.2 Solanum lycopersicum HOM05D005820 ORTHO05D007116 5.3e-184 648.7 730 50.7
Actinidia08766 Actinidia chinensis HOM05D005820 ORTHO05D007116 2.6e-183 646.4 654 54.6
CANSAT54G2180 Cannabis sativa HOM05D005820 ORTHO05D007116 3.4e-183 646.0 710 51.8
RcHm_v2.0_Chr1g0384611 Rosa chinensis HOM05D005820 ORTHO05D007116 7.7e-183 644.8 714 51.5
COL.COLO4_15131 Corchorus olitorius HOM05D005820 ORTHO05D007116 1.4e-181 640.6 744 50.0
MELO3C005455.2 Cucumis melo HOM05D005820 ORTHO05D007116 1.6e-180 637.1 722 49.6
CsaV3_5G005010 Cucumis sativus L. HOM05D005820 ORTHO05D007116 2.7e-180 636.3 721 49.1
vmacro06371 Vaccinium macrocarpon HOM05D005820 ORTHO05D007116 4.7e-180 635.6 755 48.9
MD07G1032700 Malus domestica HOM05D005820 ORTHO05D007116 7.9e-180 634.8 717 51.6
PSO210G4891 Papaver somniferum HOM05D005820 ORTHO05D007116 3.0e-179 632.9 766 47.9
Glyma.12G014600 Glycine max HOM05D005820 ORTHO05D007116 6.7e-179 631.7 722 48.6
FAN01G2368 Fragaria x ananassa HOM05D005820 ORTHO05D007116 3.3e-178 629.4 714 51.0
Thecc.05G222900 Theobroma cacao HOM05D005820 ORTHO05D007116 4.4e-178 629.0 693 51.4
PSO339G0775 Papaver somniferum HOM05D005820 ORTHO05D007116 7.4e-178 628.2 769 47.9
FvH4_7g34260 Fragaria vesca HOM05D005820 ORTHO05D007116 9.7e-178 627.9 714 51.0
PSO384G2364 Papaver somniferum HOM05D005820 ORTHO05D007116 1.3e-177 627.5 802 47.3
Phvul.011G017500 Phaseolus vulgaris HOM05D005820 ORTHO05D007116 2.2e-177 626.7 724 48.5
FAN03G2216 Fragaria x ananassa HOM05D005820 ORTHO05D007116 1.8e-176 623.6 724 50.8
Medtr5g082610 Medicago truncatula HOM05D005820 ORTHO05D007116 1.5e-175 620.5 714 48.3
Haze_00369 Corylus avellana HOM05D005820 ORTHO05D007116 4.5e-175 619.0 784 46.8
Rhsim03G0224500 Rhododendron simsii HOM05D005820 ORTHO05D007116 4.5e-175 619.0 749 49.0
Sed0005542 Sechium edule HOM05D005820 ORTHO05D007116 2.2e-174 616.7 723 47.3
VMungo1127G1342 Vigna mungo HOM05D005820 ORTHO05D007116 6.5e-174 615.1 742 47.0
Lj3g0016493 Lotus japonicus HOM05D005820 ORTHO05D007116 1.8e-171 607.1 727 47.2
Migut.J00550 Erythranthe guttata HOM05D005820 ORTHO05D007116 2.3e-171 606.7 736 47.1
Sp6g27470 Schrenkiella parvula HOM05D005820 ORTHO05D007116 1.1e-170 604.4 725 45.8
THA.LOC104821161 Tarenaya hassleriana HOM05D005820 ORTHO05D007116 3.7e-169 599.4 731 45.7
Nitab4.5_0012358g0010 Nicotiana tabacum HOM05D005820 ORTHO05D007116 1.8e-168 597.0 724 47.8
AL6G27690 Arabidopsis lyrata HOM05D005820 ORTHO05D007116 7.0e-168 595.1 727 44.7
Thhalv10012783m.g Eutrema salsugineum HOM05D005820 ORTHO05D007116 1.2e-167 594.3 724 45.2
C09p60450 Brassica napus HOM05D005820 ORTHO05D007116 7.7e-167 591.7 720 44.9
Prupe.2G329300 Prunus persica HOM05D005820 ORTHO05D007116 3.8e-166 589.3 707 48.7
SGA_v2.0_scaffold75G24867 Striga asiatica HOM05D005820 ORTHO05D007116 1.9e-165 587.0 731 46.5
TPR.G19809 Trifolium pratense HOM05D005820 ORTHO05D007116 7.2e-165 585.1 641 49.6
Aa31LG11G12940 Aethionema arabicum HOM05D005820 ORTHO05D007116 1.6e-164 583.9 781 42.1
Carub.0006s1489 Capsella rubella HOM05D005820 ORTHO05D007116 1.6e-164 583.9 722 44.6
PGR042G2204 Punica granatum HOM05D005820 ORTHO05D007116 2.7e-164 583.2 720 46.7
Eucgr.A02992 Eucalyptus grandis HOM05D005820 ORTHO05D007116 2.3e-163 580.1 725 44.4
BraA10t44315Z Brassica rapa HOM05D005820 ORTHO05D007116 1.5e-162 577.4 719 43.9
AUR62033087 Chenopodium quinoa HOM05D005820 ORTHO05D007116 5.7e-162 575.5 713 46.6
ATR0829G080 Amborella trichopoda HOM05D005820 ORTHO05D007116 2.8e-161 573.2 697 46.2
A10p22530 Brassica napus HOM05D005820 ORTHO05D007116 4.8e-161 572.4 716 43.7
Os10g0402200 Oryza sativa ssp. japonica HOM05D005820 ORTHO05D007116 4.5e-159 565.8 730 43.3
BolC9t58877H Brassica oleracea HOM05D005820 ORTHO05D007116 1.6e-156 557.4 762 41.9
EL10Ac4g08387 Beta vulgaris HOM05D005820 ORTHO05D007116 2.1e-156 557.0 701 45.9
EL10Ac2g03131 Beta vulgaris HOM05D005820 ORTHO05D007116 8.0e-156 555.1 713 44.9
Zm00001eb031810 Zea mays HOM05D005820 ORTHO05D007116 7.5e-154 548.5 720 42.1
FAN10G1332 Fragaria x ananassa HOM05D005820 ORTHO05D007116 3.7e-153 546.2 672 48.7
AT5G16690 Arabidopsis thaliana HOM05D005820 ORTHO05D007116 1.8e-152 543.9 704 43.6
CARHR196510 Cardamine hirsuta HOM05D005820 ORTHO05D007116 7.7e-151 538.5 715 41.8
BcaB08g36827 Brassica carinata HOM05D005820 ORTHO05D007116 7.0e-144 515.4 707 42.0
Manes.08G160700 Manihot esculenta HOM05D005820 ORTHO05D007116 5.9e-143 512.3 593 48.9
HPP92_000954 Vanilla planifolia HOM05D005820 ORTHO05D007116 1.6e-140 504.2 727 41.4
CDE02G0417 Ceratophyllum demersum HOM05D005820 ORTHO05D007116 2.8e-140 503.4 674 42.4
Nitab4.5_0010710g0030 Nicotiana tabacum HOM05D005820 ORTHO05D007116 3.7e-129 466.5 562 48.8
CAN.G103.20 Capsicum annuum HOM05D005820 ORTHO05D007116 3.3e-125 453.4 518 48.8
unitig_749.g14271 Utricularia gibba HOM05D005820 ORTHO05D007116 2.7e-119 433.7 709 37.5
Lalb_Chr01g0000781 Lupinus albus HOM05D005820 ORTHO05D007116 1.0e-118 431.8 532 44.4
Sc13g0011020 Simmondsia chinensis HOM05D005820 ORTHO05D007116 8.6e-118 428.7 512 48.0
Hma1.2p1_0419F.1_g149510 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 8.1e-116 422.2 435 53.3
Psat5g135040 Pisum sativum HOM05D005820 ORTHO05D007116 9.3e-112 408.7 495 44.8
AUR62042764 Chenopodium quinoa HOM05D005820 ORTHO05D007116 9.6e-109 398.7 578 43.1
PSO170G6050 Papaver somniferum HOM05D005820 ORTHO05D007116 1.4e-107 394.8 430 51.2
SalBow3G3950 Salvia bowleyana HOM05D005820 ORTHO05D007116 6.9e-107 392.5 521 42.6
Sabra13G0066100 Salix brachista HOM05D005820 ORTHO05D007116 9.0e-107 392.1 355 55.8
ClCG01G004810 Citrullus lanatus HOM05D005820 ORTHO05D007116 5.8e-106 389.4 477 46.5
Ciclev10033588m.g Citrus clementina HOM05D005820 ORTHO05D007116 7.3e-101 372.5 330 59.1
PGSC0003DMG402015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 1.5e-98 364.8 356 53.9
Ca_03104_v3 Cicer arietinum L. HOM05D005820 ORTHO05D007116 1.3e-92 345.1 406 46.3
Hma1.2p1_0419F.1_g149500 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 3.1e-91 340.5 287 62.0
COL.COLO4_22345 Corchorus olitorius HOM05D005820 ORTHO05D007116 3.4e-90 337.0 370 50.8
arahy.Tifrunner.gnm1.ann1.9S7XN2 Arachis hypogaea HOM05D005820 ORTHO05D007116 6.0e-87 326.2 328 51.5
SHI15005 Sapria himalayana HOM05D005820 ORTHO05D007116 1.7e-81 308.1 351 47.6
AagrBONN_evm.TU.Sc2ySwM_368.2608 Anthoceros agrestis HOM05D005820 ORTHO05D007116 1.9e-80 304.7 695 29.9
Mapoly0140s0032 Marchantia polymorpha HOM05D005820 ORTHO05D007116 1.9e-77 294.7 816 28.1
arahy.Tifrunner.gnm1.ann1.86ZX86 Arachis hypogaea HOM05D005820 ORTHO05D007116 9.7e-77 292.4 352 47.4
PGSC0003DMG401015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 2.6e-74 284.3 332 50.3
MD01G1239300 Malus domestica HOM05D005820 ORTHO05D007116 2.1e-71 274.6 452 39.2
Pp3c16_7630 Physcomitrium patens HOM05D005820 ORTHO05D007116 1.5e-69 268.5 923 27.1
SMO203G0218 Selaginella moellendorffii HOM05D005820 ORTHO05D007116 1.5e-69 268.5 680 29.6
Lj3A884T58 Lonicera japonica HOM05D005820 ORTHO05D007116 2.9e-65 254.2 232 59.1
Ciclev10032799m.g Citrus clementina HOM05D005820 ORTHO05D007116 3.0e-62 244.2 200 61.0
Cpa.g.sc43.140 Carica papaya HOM05D005820 ORTHO05D007116 3.8e-57 227.3 238 51.3
Oeu046340.1 Olea europaea HOM05D005820 ORTHO05D007116 2.1e-55 221.5 161 67.7
CBR_g52284 Chara braunii HOM05D005820 ORTHO05D007116 1.1e-51 209.1 891 23.3
Oeu001352.2 Olea europaea HOM05D005820 ORTHO05D007116 1.2e-50 205.7 269 42.8
CAN.G824.56 Capsicum annuum HOM05D005820 ORTHO05D007116 5.0e-49 200.3 161 65.2
Lalb_Chr01g0000771 Lupinus albus HOM05D005820 ORTHO05D007116 9.4e-48 196.1 164 59.8
arahy.Tifrunner.gnm1.ann1.CH4JFK Arachis hypogaea HOM05D005820 ORTHO05D007116 8.8e-46 189.5 698 27.1
arahy.Tifrunner.gnm1.ann1.9KL91U Arachis hypogaea HOM05D005820 ORTHO05D007116 6.3e-44 183.3 593 28.7
Cpa.g.sc43.143 Carica papaya HOM05D005820 ORTHO05D007116 2.0e-42 178.3 266 42.5
Lj3A884T57 Lonicera japonica HOM05D005820 ORTHO05D007116 2.0e-42 178.3 162 56.8
Nitab4.5_0010710g0040 Nicotiana tabacum HOM05D005820 ORTHO05D007116 1.3e-41 175.6 141 66.0
Hma1.2p1_0419F.1_g149520 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 2.9e-28 131.3 105 57.1
CAN.G557.3 Capsicum annuum HOM05D005820 ORTHO05D007116 2.0e-26 125.2 238 38.2
AUR62022348 Chenopodium quinoa HOM05D005820 ORTHO05D007116 2.8e-23 114.8 98 62.2
SEGI_39455 Sequoiadendron giganteum HOM05D005820 ORTHO05D007116 5.2e-22 110.5 121 46.3
CAN.G1793.2 Capsicum annuum HOM05D005820 ORTHO05D007116 7.5e-13 80.1 148 35.8
CAN.G159.6 Capsicum annuum HOM05D001691 ORTHO05D007116 3.0e-09 68.2 160 33.1
Ah.10g032150 Amaranthus hybridus HOM05D005820 ORTHO05D007116 1.5e-08 65.9 277 26.0
arahy.Tifrunner.gnm1.ann1.DVH85A Arachis hypogaea HOM05D005820 ORTHO05D007116 2.5e-08 65.1 59 61.0
MCO08G313 Micromonas commoda HOM05D005820 ORTHO05D007116 8.1e-07 60.1 131 32.8
COL.COLO4_37046 Corchorus olitorius HOM05D005820 ORTHO05D007116 1.8e-06 58.9 35 74.3


User provided reference genes

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