Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0487741 Helianthus annuus HOM05D004214 ORTHO05D004963 1.9e-141 505.8 248 100.0
Lsat_1_v5_gn_4_169740 Lactuca sativa HOM05D004214 ORTHO05D004963 1.0e-105 387.1 257 76.7
ECA232G2753 Erigeron canadensis HOM05D004214 ORTHO05D005214 8.0e-103 377.5 200 90.5
MSTRG.23916 Avicennia marina HOM05D004214 ORTHO05D004963 1.3e-84 317.0 202 74.8
Oeu010226.1 Olea europaea HOM05D004214 ORTHO05D004963 1.3e-84 317.0 202 74.3
Oeu010227.1 Olea europaea HOM05D004214 ORTHO05D004963 1.3e-84 317.0 202 74.3
Dinv11505 Davidia involucrata HOM05D004214 ORTHO05D004963 1.6e-82 310.1 264 61.7
Migut.H00677 Erythranthe guttata HOM05D004214 ORTHO05D004963 3.5e-82 308.9 202 71.8
CSS0015906 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.5e-80 303.5 202 71.3
CSS0019671 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.5e-80 303.5 202 71.3
Eucgr.I02016 Eucalyptus grandis HOM05D004214 ORTHO05D004963 2.1e-79 299.7 226 65.9
SalBow1G5883 Salvia bowleyana HOM05D004214 ORTHO05D004963 4.7e-79 298.5 202 71.3
Actinidia06102 Actinidia chinensis HOM05D004214 ORTHO05D004963 2.3e-78 296.2 234 62.4
GSVIVG01011460001 Vitis vinifera HOM05D004214 ORTHO05D004963 3.1e-78 295.8 197 72.6
PGSC0003DMG400025136 Solanum tuberosum HOM05D004214 ORTHO05D004963 1.5e-77 293.5 244 59.4
Potri.017G087500 Populus trichocarpa HOM05D004214 ORTHO05D004963 5.8e-77 291.6 199 69.8
TWI60G1366 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 5.8e-77 291.6 195 70.8
Solyc02g067120.4 Solanum lycopersicum HOM05D004214 ORTHO05D004963 9.8e-77 290.8 200 68.5
Sopen02g016310 Solanum pennellii HOM05D004214 ORTHO05D004963 9.8e-77 290.8 200 68.5
Hma1.2p1_0409F.1_g146710 Hydrangea macrophylla HOM05D004214 ORTHO05D004963 3.7e-76 288.9 253 57.3
EL10Ac2g03019 Beta vulgaris HOM05D004214 ORTHO05D004963 4.9e-76 288.5 202 68.3
Cc07_g03630 Coffea canephora HOM05D004214 ORTHO05D004963 1.2e-74 283.9 211 63.0
TAR629G3302 Trochodendron aralioides HOM05D004214 ORTHO05D004963 1.6e-74 283.5 197 69.5
Sc10g0003430 Simmondsia chinensis HOM05D004214 ORTHO05D004963 2.1e-74 283.1 212 64.6
Cpa.g.sc14.113 Carica papaya HOM05D004214 ORTHO05D004963 3.5e-74 282.3 193 69.4
THA.LOC104805483 Tarenaya hassleriana HOM05D004214 ORTHO05D004963 3.5e-74 282.3 216 62.5
Ciclev10012515m.g Citrus clementina HOM05D004214 ORTHO05D004963 1.3e-73 280.4 191 70.7
Manes.02G048700 Manihot esculenta HOM05D004214 ORTHO05D004963 5.1e-73 278.5 217 63.6
Nitab4.5_0010283g0010 Nicotiana tabacum HOM05D004214 ORTHO05D004963 8.6e-73 277.7 202 66.3
Sp7g02430 Schrenkiella parvula HOM05D004214 ORTHO05D004963 1.5e-72 276.9 202 64.9
Atru.chr8.322 Acer truncatum HOM05D004214 ORTHO05D004963 1.9e-72 276.6 198 68.2
CARHR262760 Cardamine hirsuta HOM05D004214 ORTHO05D004963 1.9e-72 276.6 202 66.3
Thhalv10027904m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 3.3e-72 275.8 202 64.9
BraA04t16893Z Brassica rapa HOM05D004214 ORTHO05D004963 5.6e-72 275.0 202 65.3
AL7G50770 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 7.3e-72 274.6 202 64.9
A04p12290 Brassica napus HOM05D004214 ORTHO05D004963 1.6e-71 273.5 202 65.3
C04p45970 Brassica napus HOM05D004214 ORTHO05D004963 2.8e-71 272.7 202 64.9
BolC4t26180H Brassica oleracea HOM05D004214 ORTHO05D004963 2.8e-71 272.7 202 64.9
Carub.0007s3642 Capsella rubella HOM05D004214 ORTHO05D004963 2.8e-71 272.7 202 64.9
CSS0036969 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 4.7e-71 271.9 191 68.6
BcaB06g27341 Brassica carinata HOM05D004214 ORTHO05D004963 8.1e-71 271.2 202 64.4
CAN.G979.5 Capsicum annuum HOM05D004214 ORTHO05D004963 5.2e-70 268.5 189 67.2
unitig_62.g23442 Utricularia gibba HOM05D004214 ORTHO05D004963 5.2e-70 268.5 202 62.4
AUR62018111 Chenopodium quinoa HOM05D004214 ORTHO05D004963 6.8e-70 268.1 213 61.5
Duzib147G0992 Durio zibethinus HOM05D004214 ORTHO05D004963 4.4e-69 265.4 197 62.4
Lj3A346G23 Lonicera japonica HOM05D004214 ORTHO05D004963 5.8e-69 265.0 193 63.2
TWI34G0797 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 5.8e-69 265.0 193 66.3
TWI34G1333 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 5.8e-69 265.0 193 66.3
Thhalv10028063m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 7.5e-69 264.6 201 62.2
Rhsim10G0035900 Rhododendron simsii HOM05D004214 ORTHO05D004963 7.5e-69 264.6 222 60.4
DCAR_011079 Daucus carota HOM05D004214 ORTHO05D004963 1.3e-68 263.8 193 64.8
Rhsim10G0035800 Rhododendron simsii HOM05D004214 ORTHO05D004963 6.4e-68 261.5 201 65.2
BraA04t16892Z Brassica rapa HOM05D004214 ORTHO05D004963 7.1e-67 258.1 199 62.8
C04p45960 Brassica napus HOM05D004214 ORTHO05D004963 1.2e-66 257.3 199 62.8
BolC4t26179H Brassica oleracea HOM05D004214 ORTHO05D004963 1.2e-66 257.3 199 62.8
Hund15587 Selenicereus undatus HOM05D004214 ORTHO05D004963 1.2e-66 257.3 191 65.4
BcaB06g27320 Brassica carinata HOM05D004214 ORTHO05D004963 2.7e-66 256.1 199 62.3
A04p12270 Brassica napus HOM05D004214 ORTHO05D004963 2.7e-66 256.1 199 60.8
Gorai.001G240700 Gossypium raimondii HOM05D004214 ORTHO05D004963 2.7e-66 256.1 203 58.1
AL7G50790 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 7.8e-66 254.6 219 56.6
Thecc.04G087300 Theobroma cacao HOM05D004214 ORTHO05D004963 7.8e-66 254.6 197 60.4
BraA04t16891Z Brassica rapa HOM05D004214 ORTHO05D004963 1.0e-65 254.2 199 60.3
Sp7g02440 Schrenkiella parvula HOM05D004214 ORTHO05D004963 1.0e-65 254.2 191 62.8
A04p12280 Brassica napus HOM05D004214 ORTHO05D004963 1.3e-65 253.8 199 62.3
AT5G39520 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 3.0e-65 252.7 204 57.8
Carub.0007s3643 Capsella rubella HOM05D004214 ORTHO05D004963 3.9e-65 252.3 203 59.1
BcaB06g27340 Brassica carinata HOM05D004214 ORTHO05D004963 1.5e-64 250.4 195 61.5
CARHR262800 Cardamine hirsuta HOM05D004214 ORTHO05D004963 1.9e-64 250.0 176 67.6
CARHR262810 Cardamine hirsuta HOM05D004214 ORTHO05D004963 3.3e-64 249.2 232 53.0
SGA_v2.0_scaffold413G51175 Striga asiatica HOM05D004214 ORTHO05D004963 1.6e-63 246.9 182 68.7
COL.COLO4_12225 Corchorus olitorius HOM05D004214 ORTHO05D004963 3.6e-63 245.7 180 62.8
AUR62034445 Chenopodium quinoa HOM05D004214 ORTHO05D004963 4.0e-62 242.3 169 66.3
ATR0564G445 Amborella trichopoda HOM05D004214 ORTHO05D004963 1.2e-61 240.7 200 59.0
Peaxi162Scf00629g00121 Petunia axillaris HOM05D004214 ORTHO05D004963 3.8e-60 235.7 202 58.9
AT5G39530 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 2.4e-59 233.0 179 61.5
PSO478G0939 Papaver somniferum HOM05D004214 ORTHO05D004963 4.6e-58 228.8 191 55.0
CDE02G0918 Ceratophyllum demersum HOM05D004214 ORTHO05D004963 6.0e-58 228.4 196 54.6
PSO017G4463 Papaver somniferum HOM05D004214 ORTHO05D004963 1.7e-57 226.9 191 55.0
QL02p084825 Quercus lobata HOM05D004214 ORTHO05D004963 1.1e-56 224.2 196 54.6
SEGI_32476 Sequoiadendron giganteum HOM05D004214 ORTHO05D004963 5.6e-56 221.9 231 45.9
Nitab4.5_0000568g0170 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.2e-55 220.7 197 53.3
CAN.G206.176 Capsicum annuum HOM05D004214 ORTHO05D004963 1.1e-54 217.6 197 53.3
PGSC0003DMG402001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 4.0e-54 215.7 215 50.7
PGSC0003DMG401001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 9.0e-54 214.5 215 50.7
PGR004G0346 Punica granatum HOM05D004214 ORTHO05D004963 2.2e-52 209.9 135 72.6
Lj3A369T15 Lonicera japonica HOM05D004214 ORTHO05D004963 2.9e-52 209.5 146 64.4
QL02p084872 Quercus lobata HOM05D004214 ORTHO05D004963 3.8e-52 209.1 194 50.0
Lj8A428G27 Lonicera japonica HOM05D004214 ORTHO05D004963 6.4e-52 208.4 194 53.1
Nitab4.5_0000212g0090 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.1e-51 207.6 202 53.5
Lj3A367T10 Lonicera japonica HOM05D004214 ORTHO05D004963 1.9e-51 206.8 193 53.4
Gohir.D07G212700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 4.2e-51 205.7 160 59.4
Solyc02g088270.3 Solanum lycopersicum HOM05D004214 ORTHO05D004963 4.2e-51 205.7 196 51.5
Lj8A426T27 Lonicera japonica HOM05D004214 ORTHO05D004963 5.4e-51 205.3 146 63.7
BcaB06g27319 Brassica carinata HOM05D004214 ORTHO05D004963 7.1e-51 204.9 199 52.8
Sopen02g032950 Solanum pennellii HOM05D004214 ORTHO05D004963 2.7e-50 203.0 185 53.0
Nn4g23269 Nelumbo nucifera HOM05D004214 ORTHO05D004963 6.0e-50 201.8 135 68.9
Lj4P113T24 Lonicera japonica HOM05D004214 ORTHO05D004963 1.3e-49 200.7 140 66.4
Medtr6g012830 Medicago truncatula HOM05D004214 ORTHO05D004963 5.6e-48 195.3 202 46.0
Lj2g0002943 Lotus japonicus HOM05D004214 ORTHO05D004963 1.6e-47 193.7 197 46.7
arahy.Tifrunner.gnm1.ann1.55PBKN Arachis hypogaea HOM05D004214 ORTHO05D004963 2.1e-47 193.4 210 43.3
Peaxi162Scf00166g01050 Petunia axillaris HOM05D004214 ORTHO05D004963 3.6e-47 192.6 231 44.2
arahy.Tifrunner.gnm1.ann1.7SZ544 Arachis hypogaea HOM05D004214 ORTHO05D004963 4.8e-47 192.2 210 43.3
Lj3A352G14 Lonicera japonica HOM05D004214 ORTHO05D004963 4.8e-47 192.2 140 62.1
Lj2g0016815 Lotus japonicus HOM05D004214 ORTHO05D004963 6.2e-47 191.8 195 47.7
Ca_04853_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 1.2e-45 187.6 194 45.9
TPR.G14395 Trifolium pratense HOM05D004214 ORTHO05D004963 1.2e-45 187.6 207 42.5
Glyma.13G060852 Glycine max HOM05D004214 ORTHO05D004963 1.5e-45 187.2 196 47.4
Os03g0168300 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 1.1e-43 181.0 190 45.3
Phvul.004G031400 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 1.1e-43 181.0 205 42.9
Prupe.3G263500 Prunus persica HOM05D004214 ORTHO05D004963 2.4e-43 179.9 196 46.9
TPR.G26214 Trifolium pratense HOM05D004214 ORTHO05D004963 3.2e-43 179.5 204 43.1
Lalb_Chr06g0175181 Lupinus albus HOM05D004214 ORTHO05D004963 5.4e-43 178.7 219 42.0
Zm00001eb402430 Zea mays HOM05D004214 ORTHO05D004963 2.7e-42 176.4 191 41.9
VMungo0464G0566 Vigna mungo HOM05D004214 ORTHO05D004963 1.3e-41 174.1 204 43.1
Psat1g070480 Pisum sativum HOM05D004214 ORTHO05D004963 1.9e-40 170.2 172 48.3
ClCG09G017980 Citrullus lanatus HOM05D004214 ORTHO05D004963 5.6e-40 168.7 186 45.7
Glyma.19G025600 Glycine max HOM05D004214 ORTHO05D004963 5.6e-40 168.7 196 44.4
MD09G1055000 Malus domestica HOM05D004214 ORTHO05D004963 7.4e-40 168.3 191 42.4
PGR083G1063 Punica granatum HOM05D004214 ORTHO05D004963 1.3e-39 167.5 195 44.6
QL02p084854 Quercus lobata HOM05D004214 ORTHO05D004963 1.6e-39 167.2 190 44.2
Mapoly0033s0115 Marchantia polymorpha HOM05D004214 ORTHO05D004963 2.8e-39 166.4 212 39.6
CsaV3_5G038250 Cucumis sativus L. HOM05D004214 ORTHO05D004963 1.5e-37 160.6 188 44.7
C04p45950 Brassica napus HOM05D004214 ORTHO05D004963 1.3e-36 157.5 199 44.2
RcHm_v2.0_Chr2g0167291 Rosa chinensis HOM05D004214 ORTHO05D004963 1.3e-36 157.5 221 38.9
FAN05G5298 Fragaria x ananassa HOM05D004214 ORTHO05D004963 2.2e-36 156.8 185 42.2
Phvul.004G029700 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 2.9e-36 156.4 207 38.6
FvH4_6g48001 Fragaria vesca HOM05D004214 ORTHO05D004963 3.8e-36 156.0 203 40.4
Lj2g0019349 Lotus japonicus HOM05D004214 ORTHO05D004963 8.4e-36 154.8 195 40.0
Lj2g0001860 Lotus japonicus HOM05D004214 ORTHO05D004963 1.1e-35 154.5 145 49.7
Zm00001eb328430 Zea mays HOM05D004214 ORTHO05D004963 1.9e-35 153.7 167 46.7
FAN14G3700 Fragaria x ananassa HOM05D004214 ORTHO05D004963 7.1e-35 151.8 202 40.1
Psat1g071840 Pisum sativum HOM05D004214 ORTHO05D004963 1.2e-34 151.0 215 36.7
RcHm_v2.0_Chr2g0167251 Rosa chinensis HOM05D004214 ORTHO05D004963 3.5e-34 149.4 187 41.7
MELO3C033594.2 Cucumis melo HOM05D004214 ORTHO05D004963 7.9e-34 148.3 218 38.5
TPR.G8805 Trifolium pratense HOM05D004214 ORTHO05D004963 1.8e-33 147.1 180 41.7
Os07g0633000 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 2.3e-33 146.7 168 47.6
FvH4_6g48000 Fragaria vesca HOM05D004214 ORTHO05D004963 3.0e-33 146.4 185 41.1
FAN14G4990 Fragaria x ananassa HOM05D004214 ORTHO05D004963 5.1e-33 145.6 202 38.6
Ca_04848_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 9.6e-32 141.4 195 38.5
Gohir.A07G206700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 9.6e-32 141.4 107 57.9
Nitab4.5_0001591g0160 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.1e-30 137.9 196 39.8
arahy.Tifrunner.gnm1.ann1.SU00NT Arachis hypogaea HOM05D004214 ORTHO05D004963 5.8e-29 132.1 201 36.8
FAN09G1794 Fragaria x ananassa HOM05D004214 ORTHO05D004963 5.8e-29 132.1 185 38.4
RcHm_v2.0_Chr2g0167241 Rosa chinensis HOM05D004214 ORTHO05D004963 1.3e-28 131.0 190 37.9
CBR_g51334 Chara braunii HOM05D004214 ORTHO05D004963 2.9e-28 129.8 172 39.0
ClCG10G015310 Citrullus lanatus HOM05D004214 ORTHO05D004963 5.5e-27 125.6 224 34.8
BolC4t26178H Brassica oleracea HOM05D004214 ORTHO05D004963 9.3e-27 124.8 88 64.8
FAN02G2928 Fragaria x ananassa HOM05D004214 ORTHO05D004963 6.1e-26 122.1 200 37.0
Glyma.13G061800 Glycine max HOM05D004214 ORTHO05D004963 2.0e-21 107.1 102 49.0
Gohir.D11G074550 Gossypium hirsutum HOM05D004214 ORTHO05D004963 3.8e-20 102.8 99 48.5
Gorai.007G080000 Gossypium raimondii HOM05D004214 ORTHO05D004963 5.0e-20 102.4 99 48.5
MD09G1055400 Malus domestica HOM05D004214 ORTHO05D004963 3.2e-19 99.8 109 39.4
PRCOL_00004285 Prasinoderma coloniale HOM05D004214 ORTHO05D004963 3.6e-18 96.3 180 30.0
C06p18570 Brassica napus HOM05D004214 ORTHO05D004963 1.4e-17 94.4 83 60.2
Lj3A350G16 Lonicera japonica HOM05D004214 ORTHO05D004963 1.5e-16 90.9 159 35.8
CsaV3_3G041190 Cucumis sativus L. HOM05D004214 ORTHO05D004963 5.3e-14 82.4 202 27.7
Lj3A364T22 Lonicera japonica HOM05D004214 ORTHO05D004963 5.3e-14 82.4 67 58.2
Sabra17G0077200 Salix brachista HOM05D004214 ORTHO05D004963 2.6e-13 80.1 48 77.1
BraA07t29702Z Brassica rapa HOM05D004214 ORTHO05D004963 5.9e-13 79.0 74 58.1
AagrBONN_evm.TU.Sc2ySwM_362.234 Anthoceros agrestis HOM05D019249 ORTHO05D019657 2.9e-12 76.6 175 28.6
Aa31LG9G16510 Aethionema arabicum HOM05D004214 ORTHO05D004963 9.4e-11 71.6 62 54.8
CBR_g46605 Chara braunii HOM05D004214 ORTHO05D004963 1.2e-10 71.2 121 33.9
MELO3C009848.2 Cucumis melo HOM05D004214 ORTHO05D004963 2.7e-10 70.1 194 28.4
BolC9t55376H Brassica oleracea HOM05D004214 ORTHO05D004963 7.9e-10 68.6 77 48.1
BolC6t37070H Brassica oleracea HOM05D004214 ORTHO05D004963 4.4e-08 62.8 65 50.8
Zm00001eb005260 Zea mays HOM05D004214 ORTHO05D004963 1.7e-07 60.8 55 52.7
Os10g0580600 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 7.0e-06 55.5 47 53.2


User provided reference genes

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