Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0483401 Helianthus annuus HOM05D000524 ORTHO05D000381 4.7e-97 357.8 178 100.0
HanXRQChr03g0087261 Helianthus annuus HOM05D000041 ORTHO05D000452 8.0e-89 330.5 178 92.1
HanXRQChr12g0382481 Helianthus annuus HOM05D000041 ORTHO05D000452 3.3e-34 149.1 171 48.0
ECA234G1220 Erigeron canadensis HOM05D000041 ORTHO05D000452 8.8e-27 124.4 166 38.6
AUR62040555 Chenopodium quinoa HOM05D000524 ORTHO05D000381 2.9e-14 82.8 124 38.7
arahy.Tifrunner.gnm1.ann1.14P56I Arachis hypogaea HOM05D000524 ORTHO05D000381 3.8e-14 82.4 144 39.6
arahy.Tifrunner.gnm1.ann1.1W5XG7 Arachis hypogaea HOM05D000524 ORTHO05D000381 3.8e-14 82.4 144 39.6
arahy.Tifrunner.gnm1.ann1.W7YV9U Arachis hypogaea HOM05D000524 ORTHO05D000381 3.8e-14 82.4 144 39.6
Eucgr.I01409 Eucalyptus grandis HOM05D000524 ORTHO05D000381 3.8e-14 82.4 124 37.1
ECA234G3621 Erigeron canadensis HOM05D000041 ORTHO05D000452 5.0e-14 82.0 119 38.7
Potri.009G134200 Populus trichocarpa HOM05D000524 ORTHO05D000381 5.0e-14 82.0 123 37.4
PSO170G0323 Papaver somniferum HOM05D000524 ORTHO05D000381 8.5e-14 81.3 123 36.6
AUR62041479 Chenopodium quinoa HOM05D000524 ORTHO05D000381 1.1e-13 80.9 122 38.5
Lalb_Chr03g0025141 Lupinus albus HOM05D000524 ORTHO05D000381 1.1e-13 80.9 124 39.5
TWI31G0242 Tripterygium wilfordii HOM05D000524 ORTHO05D000381 2.5e-13 79.7 125 37.6
EL10Ac1g02167 Beta vulgaris HOM05D000524 ORTHO05D000381 3.2e-13 79.3 150 32.0
Lj1g0022025 Lotus japonicus HOM05D000524 ORTHO05D000381 3.2e-13 79.3 124 42.7
QL02p012108 Quercus lobata HOM05D000524 ORTHO05D000381 3.2e-13 79.3 123 38.2
Lsat_1_v5_gn_8_30100 Lactuca sativa HOM05D000524 ORTHO05D000381 4.2e-13 79.0 122 38.5
Lalb_Chr19g0139151 Lupinus albus HOM05D000524 ORTHO05D000381 4.2e-13 79.0 155 37.4
TWI79G0627 Tripterygium wilfordii HOM05D000524 ORTHO05D000381 4.2e-13 79.0 123 39.0
Atru.chr5.3307 Acer truncatum HOM05D000524 ORTHO05D000381 5.5e-13 78.6 123 34.1
Psat5g002320 Pisum sativum HOM05D000524 ORTHO05D000381 5.5e-13 78.6 123 39.8
Sed0015675 Sechium edule HOM05D000524 ORTHO05D000381 5.5e-13 78.6 122 38.5
Manes.05G145400 Manihot esculenta HOM05D000524 ORTHO05D000381 7.2e-13 78.2 122 37.7
HanXRQChr13g0387181 Helianthus annuus HOM05D000524 ORTHO05D000381 9.4e-13 77.8 122 36.1
MSTRG.5449 Avicennia marina HOM05D000524 ORTHO05D000381 1.2e-12 77.4 122 36.1
CiPaw.08G067300 Carya illinoinensis HOM05D000524 ORTHO05D000381 1.2e-12 77.4 123 35.8
CsaV3_7G000940 Cucumis sativus L. HOM05D000524 ORTHO05D000381 1.2e-12 77.4 125 36.0
ECA233G1080 Erigeron canadensis HOM05D000524 ORTHO05D000381 1.2e-12 77.4 123 36.6
Lalb_Chr23g0265031 Lupinus albus HOM05D000524 ORTHO05D000381 1.2e-12 77.4 126 39.7
Oeu008326.1 Olea europaea HOM05D000524 ORTHO05D000381 1.2e-12 77.4 123 36.6
Sc18g0006470 Simmondsia chinensis HOM05D000524 ORTHO05D000381 1.2e-12 77.4 123 36.6
VMungo1309G0404 Vigna mungo HOM05D000524 ORTHO05D000381 1.2e-12 77.4 158 34.8
SalBow1G6714 Salvia bowleyana HOM05D000524 ORTHO05D000381 1.6e-12 77.0 122 36.1
CANSAT25G3009 Cannabis sativa HOM05D000524 ORTHO05D000381 2.1e-12 76.6 123 36.6
CiPaw.05G081200 Carya illinoinensis HOM05D000524 ORTHO05D000381 2.1e-12 76.6 122 36.1
Ciclev10028159m.g Citrus clementina HOM05D000524 ORTHO05D000381 2.1e-12 76.6 119 37.0
CAN.G1925.2 Capsicum annuum HOM05D000524 ORTHO05D000381 2.7e-12 76.3 125 33.6
Ca_19063_v3 Cicer arietinum L. HOM05D000524 ORTHO05D000381 2.7e-12 76.3 124 37.9
Migut.B00087 Erythranthe guttata HOM05D000524 ORTHO05D000381 2.7e-12 76.3 122 35.2
Eucgr.H00962 Eucalyptus grandis HOM05D000524 ORTHO05D000381 2.7e-12 76.3 123 35.8
Lj4C799T2 Lonicera japonica HOM05D000524 ORTHO05D000381 2.7e-12 76.3 119 37.0
Manes.04G075000 Manihot esculenta HOM05D000524 ORTHO05D000381 2.7e-12 76.3 123 37.4
Rhsim07G0250500 Rhododendron simsii HOM05D000524 ORTHO05D000381 2.7e-12 76.3 125 34.4
Aqoxy6G02283 Aquilegia oxysepala HOM05D000524 ORTHO05D000381 3.6e-12 75.9 119 37.0
Cpa.g.sc37.147 Carica papaya HOM05D000524 ORTHO05D000381 3.6e-12 75.9 123 35.8
MELO3C013361.2 Cucumis melo HOM05D000524 ORTHO05D000381 3.6e-12 75.9 125 33.6
Dinv39535 Davidia involucrata HOM05D000524 ORTHO05D000381 3.6e-12 75.9 125 34.4
Phvul.009G119800 Phaseolus vulgaris HOM05D000524 ORTHO05D000381 3.6e-12 75.9 123 37.4
ClCG08G014200 Citrullus lanatus HOM05D000524 ORTHO05D000381 4.7e-12 75.5 125 34.4
CsaV3_2G016040 Cucumis sativus L. HOM05D000524 ORTHO05D000381 4.7e-12 75.5 123 37.4
CsaV3_2G029640 Cucumis sativus L. HOM05D000524 ORTHO05D000381 4.7e-12 75.5 123 35.0
DCAR_016729 Daucus carota HOM05D000524 ORTHO05D000381 4.7e-12 75.5 125 34.4
Glyma.06G003700 Glycine max HOM05D000524 ORTHO05D000381 4.7e-12 75.5 123 37.4
Hma1.2p1_0163F.1_g072380 Hydrangea macrophylla HOM05D000524 ORTHO05D000381 4.7e-12 75.5 123 36.6
MELO3C020813.2 Cucumis melo HOM05D000524 ORTHO05D000381 6.1e-12 75.1 123 37.4
Glyma.12G032400 Glycine max HOM05D000524 ORTHO05D000381 6.1e-12 75.1 124 37.9
Lj4A21T60 Lonicera japonica HOM05D000524 ORTHO05D000381 6.1e-12 75.1 128 39.1
PGR031G1596 Punica granatum HOM05D000524 ORTHO05D000381 6.1e-12 75.1 154 33.1
Hund00026 Selenicereus undatus HOM05D000524 ORTHO05D000381 6.1e-12 75.1 119 35.3
TAR376G0832 Trochodendron aralioides HOM05D000524 ORTHO05D000381 6.1e-12 75.1 123 34.1
EL10Ac9g21392 Beta vulgaris HOM05D000524 ORTHO05D000381 8.0e-12 74.7 121 39.7
DCAR_003165 Daucus carota HOM05D000524 ORTHO05D000381 8.0e-12 74.7 122 36.1
Duzib041G0310 Durio zibethinus HOM05D000524 ORTHO05D000381 8.0e-12 74.7 123 35.0
Gohir.D02G201200 Gossypium hirsutum HOM05D000524 ORTHO05D000381 8.0e-12 74.7 121 36.4
Gorai.005G225900 Gossypium raimondii HOM05D000524 ORTHO05D000381 8.0e-12 74.7 121 36.4
Lsat_1_v5_gn_3_46701 Lactuca sativa HOM05D000524 ORTHO05D000381 8.0e-12 74.7 123 34.1
Oeu007362.3 Olea europaea HOM05D000524 ORTHO05D000381 8.0e-12 74.7 121 35.5
Sabra09G0103900 Salix brachista HOM05D000524 ORTHO05D000381 8.0e-12 74.7 123 36.6
PGSC0003DMG400029335 Solanum tuberosum HOM05D000524 ORTHO05D000381 8.0e-12 74.7 125 32.0
Ca_13436_v3 Cicer arietinum L. HOM05D000524 ORTHO05D000381 1.0e-11 74.3 119 37.0
MELO3C011022.2 Cucumis melo HOM05D000524 ORTHO05D000381 1.0e-11 74.3 123 35.0
Gohir.A03G177500 Gossypium hirsutum HOM05D000524 ORTHO05D000381 1.0e-11 74.3 156 33.3
TPR.G39208 Trifolium pratense HOM05D000524 ORTHO05D000381 1.0e-11 74.3 121 38.0
TAR628G0892 Trochodendron aralioides HOM05D000524 ORTHO05D000381 1.0e-11 74.3 119 35.3
Dinv41948 Davidia involucrata HOM05D000524 ORTHO05D000381 1.4e-11 73.9 123 35.0
HanXRQChr17g0544231 Helianthus annuus HOM05D000524 ORTHO05D000381 1.4e-11 73.9 119 34.5
Peaxi162Scf00362g00720 Petunia axillaris HOM05D000524 ORTHO05D000381 1.4e-11 73.9 123 33.3
Sed0001294 Sechium edule HOM05D000524 ORTHO05D000381 1.4e-11 73.9 125 34.4
CSS0029981 Camellia sinensis var. sinensis HOM05D000524 ORTHO05D000381 1.8e-11 73.6 125 33.6
Gohir.A02G083000 Gossypium hirsutum HOM05D000524 ORTHO05D000381 1.8e-11 73.6 122 36.9
Gohir.D02G098400 Gossypium hirsutum HOM05D000524 ORTHO05D000381 1.8e-11 73.6 122 36.9
Lj5g0003811 Lotus japonicus HOM05D000524 ORTHO05D000381 1.8e-11 73.6 119 37.0
Solyc12g089330.2 Solanum lycopersicum HOM05D000524 ORTHO05D000381 1.8e-11 73.6 125 32.0
Thecc.02G061200 Theobroma cacao HOM05D000524 ORTHO05D000381 1.8e-11 73.6 121 34.7
Cc10_g01460 Coffea canephora HOM05D000524 ORTHO05D000381 2.3e-11 73.2 124 36.3
Haze_22660 Corylus avellana HOM05D000524 ORTHO05D000381 2.3e-11 73.2 123 35.8
Gorai.005G112200 Gossypium raimondii HOM05D000524 ORTHO05D000381 2.3e-11 73.2 122 36.9
Nitab4.5_0013925g0010 Nicotiana tabacum HOM05D000524 ORTHO05D000381 2.3e-11 73.2 123 33.3
THA.LOC104811425 Tarenaya hassleriana HOM05D000524 ORTHO05D000381 2.3e-11 73.2 123 35.0
CiPaw.07G147500 Carya illinoinensis HOM05D000524 ORTHO05D000381 3.0e-11 72.8 119 34.5
Nn6g32003 Nelumbo nucifera HOM05D000524 ORTHO05D000381 3.0e-11 72.8 122 33.6
PSO293G0002 Papaver somniferum HOM05D000524 ORTHO05D000381 3.0e-11 72.8 122 34.4
PSO675G8975 Papaver somniferum HOM05D000524 ORTHO05D000381 3.0e-11 72.8 122 34.4
Phvul.011G035100 Phaseolus vulgaris HOM05D000524 ORTHO05D000381 3.0e-11 72.8 124 37.1
Sed0013140 Sechium edule HOM05D000524 ORTHO05D000381 3.0e-11 72.8 122 35.2
Sopen12g031190 Solanum pennellii HOM05D000524 ORTHO05D000381 3.0e-11 72.8 125 31.2
DCAR_013880 Daucus carota HOM05D000524 ORTHO05D000381 3.9e-11 72.4 123 34.1
Duzib093G0688 Durio zibethinus HOM05D000524 ORTHO05D000381 3.9e-11 72.4 123 35.0
Nn5g30767 Nelumbo nucifera HOM05D000524 ORTHO05D000381 3.9e-11 72.4 160 31.2
Psat0s2115g0040 Pisum sativum HOM05D000524 ORTHO05D000381 3.9e-11 72.4 124 37.1
Ah.01g020990 Amaranthus hybridus HOM05D002927 ORTHO05D003841 5.2e-11 72.0 122 35.2
Thhalv10000116m.g Eutrema salsugineum HOM05D000524 ORTHO05D000381 5.2e-11 72.0 123 34.1
FvH4_2g01300 Fragaria vesca HOM05D000524 ORTHO05D000381 5.2e-11 72.0 156 31.4
FAN24G2460 Fragaria x ananassa HOM05D000524 ORTHO05D000381 5.2e-11 72.0 156 31.4
FAN27G3047 Fragaria x ananassa HOM05D000524 ORTHO05D000381 5.2e-11 72.0 156 32.1
RcHm_v2.0_Chr6g0252191 Rosa chinensis HOM05D000524 ORTHO05D000381 5.2e-11 72.0 156 31.4
arahy.Tifrunner.gnm1.ann1.B5LLG6 Arachis hypogaea HOM05D000524 ORTHO05D000381 6.7e-11 71.6 119 35.3
arahy.Tifrunner.gnm1.ann1.XNK7YC Arachis hypogaea HOM05D000524 ORTHO05D000381 6.7e-11 71.6 119 35.3
COL.COLO4_26125 Corchorus olitorius HOM05D000524 ORTHO05D000381 6.7e-11 71.6 123 33.3
Phvul.001G005500 Phaseolus vulgaris HOM05D000524 ORTHO05D000381 6.7e-11 71.6 119 36.1
SalBow7G3143 Salvia bowleyana HOM05D000524 ORTHO05D000381 6.7e-11 71.6 122 34.4
Ciclev10000806m.g Citrus clementina HOM05D000524 ORTHO05D000381 8.8e-11 71.2 122 35.2
COL.COLO4_17323 Corchorus olitorius HOM05D000524 ORTHO05D000381 8.8e-11 71.2 123 38.2
FAN20G0497 Fragaria x ananassa HOM05D000524 ORTHO05D000381 8.8e-11 71.2 156 31.4
Glyma.11G107300 Glycine max HOM05D000524 ORTHO05D000381 8.8e-11 71.2 121 36.4
Oeu055664.1 Olea europaea HOM05D000524 ORTHO05D000381 8.8e-11 71.2 155 31.0
MD15G1010700 Malus domestica HOM05D000524 ORTHO05D000381 1.1e-10 70.9 123 32.5
Sp4g00180 Schrenkiella parvula HOM05D000524 ORTHO05D000381 1.1e-10 70.9 123 34.1
AL4G10120 Arabidopsis lyrata HOM05D000524 ORTHO05D000381 1.5e-10 70.5 119 34.5
AT2G20990 Arabidopsis thaliana HOM05D000524 ORTHO05D000381 1.5e-10 70.5 123 33.3
AT2G21010 Arabidopsis thaliana HOM05D000524 ORTHO05D000381 1.5e-10 70.5 120 34.2
BcaB08g34957 Brassica carinata HOM05D000524 ORTHO05D000381 1.5e-10 70.5 123 33.3
A09p58580 Brassica napus HOM05D000524 ORTHO05D000381 1.5e-10 70.5 123 33.3
C08p41870 Brassica napus HOM05D000524 ORTHO05D000381 1.5e-10 70.5 123 33.3
BolC8t51750H Brassica oleracea HOM05D000524 ORTHO05D000381 1.5e-10 70.5 123 33.3
BraA09t41245Z Brassica rapa HOM05D000524 ORTHO05D000381 1.5e-10 70.5 123 33.3
Carub.0004s0006 Capsella rubella HOM05D000524 ORTHO05D000381 1.5e-10 70.5 123 33.3
Cc02_g16250 Coffea canephora HOM05D000524 ORTHO05D000381 1.5e-10 70.5 123 35.0
Glyma.14G220000 Glycine max HOM05D000524 ORTHO05D000381 1.5e-10 70.5 119 34.5
Glyma.17G259000 Glycine max HOM05D000524 ORTHO05D000381 1.5e-10 70.5 119 34.5
unitig_747.g21530 Utricularia gibba HOM05D000524 ORTHO05D000381 1.5e-10 70.5 123 33.3
arahy.Tifrunner.gnm1.ann1.X1IMZB Arachis hypogaea HOM05D000524 ORTHO05D000381 2.0e-10 70.1 124 35.5
DCAR_009493 Daucus carota HOM05D000524 ORTHO05D000381 2.0e-10 70.1 125 36.0
Medtr1g025550 Medicago truncatula HOM05D000524 ORTHO05D000381 2.0e-10 70.1 119 34.5
Potri.005G241700 Populus trichocarpa HOM05D000524 ORTHO05D000381 2.0e-10 70.1 122 35.2
Sabra02G0016100 Salix brachista HOM05D000524 ORTHO05D000381 2.0e-10 70.1 122 36.1
Aa31LG3G14130 Aethionema arabicum HOM05D000524 ORTHO05D000381 2.6e-10 69.7 123 32.5
Aa31LG3G14150 Aethionema arabicum HOM05D000524 ORTHO05D000381 2.6e-10 69.7 123 32.5
BcaC07g41178 Brassica carinata HOM05D000524 ORTHO05D000381 2.6e-10 69.7 123 32.5
Peaxi162Scf01221g00043 Petunia axillaris HOM05D000524 ORTHO05D000381 2.6e-10 69.7 119 33.6
TWI56G0143 Tripterygium wilfordii HOM05D000524 ORTHO05D000381 2.6e-10 69.7 123 33.3
MBI09_g40618_MAGBIO Magnolia biondii HOM05D000524 ORTHO05D000381 3.3e-10 69.3 123 35.8
TPR.G26382 Trifolium pratense HOM05D000524 ORTHO05D000381 3.3e-10 69.3 119 34.5
Actinidia15436 Actinidia chinensis HOM05D000524 ORTHO05D000381 4.4e-10 68.9 143 32.2
HanXRQChr05g0145281 Helianthus annuus HOM05D000524 ORTHO05D000381 4.4e-10 68.9 123 32.5
Lsat_1_v5_gn_0_1300 Lactuca sativa HOM05D000524 ORTHO05D000381 4.4e-10 68.9 151 29.1
CDE05G0159 Ceratophyllum demersum HOM05D000524 ORTHO05D000381 5.7e-10 68.6 120 35.0
Mapoly0096s0009 Marchantia polymorpha HOM05D000524 ORTHO05D000381 5.7e-10 68.6 122 33.6
Psat6g003240 Pisum sativum HOM05D000524 ORTHO05D000381 5.7e-10 68.6 156 31.4
Sabra05G0187100 Salix brachista HOM05D000524 ORTHO05D000381 5.7e-10 68.6 156 33.3
CSS0029644 Camellia sinensis var. sinensis HOM05D000524 ORTHO05D000381 7.4e-10 68.2 125 29.6
CSS0047122 Camellia sinensis var. sinensis HOM05D000524 ORTHO05D000381 7.4e-10 68.2 125 29.6
ECA246G0512 Erigeron canadensis HOM05D000140 ORTHO05D000087 7.4e-10 68.2 117 34.2
Ah.01g022900 Amaranthus hybridus HOM05D000524 ORTHO05D000381 9.7e-10 67.8 121 38.8
SGA_v2.0_scaffold92G28208 Striga asiatica HOM05D000524 ORTHO05D000381 9.7e-10 67.8 123 32.5
CARHR020560 Cardamine hirsuta HOM05D000524 ORTHO05D000381 1.3e-09 67.4 123 36.6
Gohir.A05G185400 Gossypium hirsutum HOM05D000524 ORTHO05D000381 1.3e-09 67.4 119 32.8
Lalb_Chr01g0008601 Lupinus albus HOM05D000524 ORTHO05D000381 1.3e-09 67.4 119 36.1
MD05G1120700 Malus domestica HOM05D000524 ORTHO05D000381 1.3e-09 67.4 119 32.8
THA.LOC104824767 Tarenaya hassleriana HOM05D000524 ORTHO05D000381 1.7e-09 67.0 119 31.9
VMungo0647G0879 Vigna mungo HOM05D000524 ORTHO05D000381 2.2e-09 66.6 119 33.6
Dinv14099 Davidia involucrata HOM05D000524 ORTHO05D000381 4.8e-09 65.5 112 36.6
ECA234G0858 Erigeron canadensis HOM05D000524 ORTHO05D000381 4.8e-09 65.5 121 32.2
Aa31LG7G4520 Aethionema arabicum HOM05D000524 ORTHO05D000381 8.2e-09 64.7 125 34.4
Peaxi162Scf00064g00735 Petunia axillaris HOM05D000524 ORTHO05D000381 8.2e-09 64.7 122 31.1
SalBow5G3914 Salvia bowleyana HOM05D000524 ORTHO05D000381 1.1e-08 64.3 129 31.0
SalBow5G4380 Salvia bowleyana HOM05D000524 ORTHO05D000381 1.1e-08 64.3 129 31.0
HPP92_007314 Vanilla planifolia HOM05D000524 ORTHO05D000381 3.1e-08 62.8 123 32.5
Os02g0448400 Oryza sativa ssp. japonica HOM05D000524 ORTHO05D000381 4.1e-08 62.4 123 33.3
HPP92_007315 Vanilla planifolia HOM05D000524 ORTHO05D000381 4.1e-08 62.4 123 32.5
CANSAT56G1328 Cannabis sativa HOM05D000524 ORTHO05D000381 1.2e-07 60.8 118 31.4
Hma1.2p1_0614F.1_g189400 Hydrangea macrophylla HOM05D000524 ORTHO05D000381 1.2e-07 60.8 144 33.3
arahy.Tifrunner.gnm1.ann1.F25TPA Arachis hypogaea HOM05D000524 ORTHO05D000381 1.6e-07 60.5 139 28.8
CANSAT56G3366 Cannabis sativa HOM05D000524 ORTHO05D000381 1.6e-07 60.5 118 31.4
Eucgr.K01245 Eucalyptus grandis HOM05D000524 ORTHO05D000381 2.0e-07 60.1 132 29.5
Gohir.A05G412200 Gossypium hirsutum HOM05D000524 ORTHO05D000381 2.0e-07 60.1 137 27.7
Gohir.D04G003800 Gossypium hirsutum HOM05D000524 ORTHO05D000381 2.6e-07 59.7 130 28.5
ECA232G1536 Erigeron canadensis HOM05D000524 ORTHO05D000381 5.9e-07 58.5 109 32.1
Oeu016967.2 Olea europaea HOM05D000524 ORTHO05D000381 5.9e-07 58.5 128 28.9
MBI07_g30984_MAGBIO Magnolia biondii HOM05D000524 ORTHO05D000381 1.7e-06 57.0 134 29.9
Glyma.20G180600 Glycine max HOM05D000524 ORTHO05D000381 2.2e-06 56.6 120 30.0
Gorai.012G005000 Gossypium raimondii HOM05D000524 ORTHO05D000381 2.2e-06 56.6 130 27.7
VMungo1127G0105 Vigna mungo HOM05D000524 ORTHO05D000381 2.2e-06 56.6 102 36.3


User provided reference genes

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