Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0476731 Helianthus annuus HOM05D006178 ORTHO05D007504 4.2e-181 637.9 315 100.0
ECA246G2474 Erigeron canadensis HOM05D006178 ORTHO05D007504 5.7e-138 494.6 313 78.3
Lsat_1_v5_gn_3_53481 Lactuca sativa HOM05D006178 ORTHO05D007504 2.5e-133 479.2 299 80.6
FvH4_4g33550 Fragaria vesca HOM05D006178 ORTHO05D007504 1.7e-118 429.9 306 68.6
FAN07G2930 Fragaria x ananassa HOM05D006178 ORTHO05D007504 8.6e-118 427.6 306 67.6
Hma1.2p1_0277F.1_g111690 Hydrangea macrophylla HOM05D006178 ORTHO05D007504 2.8e-116 422.5 307 66.8
CiPaw.05G188700 Carya illinoinensis HOM05D006178 ORTHO05D007504 4.7e-116 421.8 305 65.6
GSVIVG01011660001 Vitis vinifera HOM05D006178 ORTHO05D007504 4.7e-116 421.8 310 64.2
Actinidia38440 Actinidia chinensis HOM05D006178 ORTHO05D007504 6.1e-116 421.4 301 67.8
FAN12G1191 Fragaria x ananassa HOM05D006178 ORTHO05D007504 8.0e-116 421.0 318 66.0
FAN22G2090 Fragaria x ananassa HOM05D006178 ORTHO05D007504 1.8e-115 419.9 318 65.7
Thecc.02G292800 Theobroma cacao HOM05D006178 ORTHO05D007504 8.8e-115 417.5 306 65.0
FAN17G1905 Fragaria x ananassa HOM05D006178 ORTHO05D007504 2.0e-114 416.4 317 65.0
Cc11_g07280 Coffea canephora HOM05D006178 ORTHO05D007504 2.8e-113 412.5 316 63.6
Ciclev10015964m.g Citrus clementina HOM05D006178 ORTHO05D007504 4.9e-113 411.8 308 63.6
MD13G1020300 Malus domestica HOM05D006178 ORTHO05D007504 4.9e-113 411.8 308 64.0
TWI74G1561 Tripterygium wilfordii HOM05D006178 ORTHO05D007504 4.9e-113 411.8 303 64.7
Duzib251G0568 Durio zibethinus HOM05D006178 ORTHO05D007504 1.1e-112 410.6 306 64.4
Atru.chr11.922 Acer truncatum HOM05D006178 ORTHO05D007504 5.4e-112 408.3 307 64.2
QL03p035908 Quercus lobata HOM05D006178 ORTHO05D007504 9.2e-112 407.5 332 60.2
Migut.E00482 Erythranthe guttata HOM05D006178 ORTHO05D007504 1.2e-111 407.1 310 64.8
SalBow2G2905 Salvia bowleyana HOM05D006178 ORTHO05D007504 6.6e-110 401.4 306 64.4
Oeu044010.1 Olea europaea HOM05D006178 ORTHO05D007504 3.3e-109 399.1 289 67.1
Lj6C738G3 Lonicera japonica HOM05D001486 ORTHO05D007504 4.3e-109 398.7 286 68.2
Prupe.1G333400 Prunus persica HOM05D006178 ORTHO05D007504 4.3e-109 398.7 313 62.3
CsaV3_5G015780 Cucumis sativus L. HOM05D006178 ORTHO05D007504 5.6e-109 398.3 310 59.7
Gohir.D01G139900 Gossypium hirsutum HOM05D006178 ORTHO05D007504 9.5e-109 397.5 306 62.7
Gorai.002G172000 Gossypium raimondii HOM05D006178 ORTHO05D007504 9.5e-109 397.5 306 62.7
Gohir.A01G146700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.1e-108 396.4 306 62.4
PGSC0003DMG400028747 Solanum tuberosum HOM05D006178 ORTHO05D007504 8.0e-108 394.4 306 61.1
Eucgr.B02675 Eucalyptus grandis HOM05D006178 ORTHO05D007504 1.8e-107 393.3 300 63.3
Psat6g046400 Pisum sativum HOM05D006178 ORTHO05D007504 1.8e-107 393.3 303 61.1
Lj2g0017740 Lotus japonicus HOM05D006178 ORTHO05D007504 4.0e-107 392.1 305 60.3
CAN.G511.14 Capsicum annuum HOM05D006178 ORTHO05D007504 5.2e-107 391.7 315 59.7
Potri.010G106400 Populus trichocarpa HOM05D006178 ORTHO05D007504 8.9e-107 391.0 309 60.8
Sc04g0008610 Simmondsia chinensis HOM05D006178 ORTHO05D007504 2.0e-106 389.8 310 61.3
Cpa.g.sc2.193 Carica papaya HOM05D006178 ORTHO05D007504 9.8e-106 387.5 310 61.0
Medtr1g032430 Medicago truncatula HOM05D006178 ORTHO05D007504 1.7e-105 386.7 305 58.7
EL10Ac2g02672 Beta vulgaris HOM05D006178 ORTHO05D007504 6.4e-105 384.8 304 60.2
Sopen07g004780 Solanum pennellii HOM05D006178 ORTHO05D007504 6.4e-105 384.8 306 60.8
MELO3C016656.2 Cucumis melo HOM05D006178 ORTHO05D007504 1.4e-104 383.6 324 58.3
Solyc07g008850.3 Solanum lycopersicum HOM05D006178 ORTHO05D007504 1.8e-104 383.3 302 59.9
Ca_12542_v3 Cicer arietinum L. HOM05D006178 ORTHO05D007504 3.2e-104 382.5 297 60.6
Glyma.02G085100 Glycine max HOM05D006178 ORTHO05D007504 5.4e-104 381.7 305 58.4
Ah.02g128010 Amaranthus hybridus HOM05D006178 ORTHO05D007504 2.0e-103 379.8 308 58.1
Manes.15G134200 Manihot esculenta HOM05D006178 ORTHO05D007504 2.0e-103 379.8 310 59.4
ClCG09G011820 Citrullus lanatus HOM05D006178 ORTHO05D007504 5.9e-103 378.3 303 60.4
COL.COLO4_16591 Corchorus olitorius HOM05D006178 ORTHO05D007504 1.0e-102 377.5 292 62.3
THA.LOC104821906 Tarenaya hassleriana HOM05D006178 ORTHO05D007504 6.6e-102 374.8 307 57.7
TPR.G36937 Trifolium pratense HOM05D006178 ORTHO05D007504 2.5e-101 372.9 304 58.2
arahy.Tifrunner.gnm1.ann1.56CUD8 Arachis hypogaea HOM05D006178 ORTHO05D007504 3.3e-101 372.5 304 58.6
DCAR_007330 Daucus carota HOM05D006178 ORTHO05D007504 1.6e-100 370.2 292 61.3
Thhalv10007963m.g Eutrema salsugineum HOM05D006178 ORTHO05D007504 1.6e-100 370.2 298 59.4
Lalb_Chr17g0338441 Lupinus albus HOM05D006178 ORTHO05D007504 4.7e-100 368.6 285 60.0
arahy.Tifrunner.gnm1.ann1.M99K8C Arachis hypogaea HOM05D006178 ORTHO05D007504 8.0e-100 367.9 304 57.9
PSO017G4246 Papaver somniferum HOM05D006178 ORTHO05D007504 8.0e-100 367.9 302 59.3
PSO478G4000 Papaver somniferum HOM05D006178 ORTHO05D007504 4.0e-99 365.5 302 58.9
AUR62014248 Chenopodium quinoa HOM05D006178 ORTHO05D007504 1.2e-98 364.0 284 61.3
AUR62038473 Chenopodium quinoa HOM05D006178 ORTHO05D007504 1.5e-98 363.6 284 60.9
Hund24927 Selenicereus undatus HOM05D006178 ORTHO05D007504 3.7e-97 359.0 387 49.1
Sp1g23080 Schrenkiella parvula HOM05D006178 ORTHO05D007504 1.9e-96 356.7 298 56.7
Phvul.003G019200 Phaseolus vulgaris HOM05D006178 ORTHO05D007504 3.2e-96 355.9 302 56.3
A08p26780 Brassica napus HOM05D006178 ORTHO05D007504 9.2e-96 354.4 298 56.7
AL1G40190 Arabidopsis lyrata HOM05D006178 ORTHO05D007504 3.5e-95 352.4 298 57.7
AT1G24793 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 7.8e-95 351.3 298 56.0
AT1G25054 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 7.8e-95 351.3 298 56.0
AT1G25145 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 7.8e-95 351.3 298 56.0
AT1G25210 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 7.8e-95 351.3 298 56.0
Carub.0001s2539 Capsella rubella HOM05D006178 ORTHO05D007504 7.8e-95 351.3 298 56.7
Dinv07729 Davidia involucrata HOM05D006178 ORTHO05D007504 1.5e-93 347.1 241 69.3
BcaB03g12042 Brassica carinata HOM05D006178 ORTHO05D007504 4.3e-93 345.5 311 52.7
BraA08t34624Z Brassica rapa HOM05D006178 ORTHO05D007504 6.2e-92 341.7 298 55.7
vmacro00552 Vaccinium macrocarpon HOM05D006178 ORTHO05D007504 2.3e-91 339.7 316 57.3
BcaC01g01670 Brassica carinata HOM05D006178 ORTHO05D007504 1.5e-90 337.0 284 57.0
MBI13_g29562_MAGBIO Magnolia biondii HOM05D006178 ORTHO05D007504 1.5e-90 337.0 303 57.8
Haze_10879 Corylus avellana HOM05D006178 ORTHO05D007504 2.0e-90 336.7 241 65.1
Peaxi162Scf00937g00336 Petunia axillaris HOM05D006178 ORTHO05D007504 4.4e-90 335.5 297 55.6
C03p73180 Brassica napus HOM05D006178 ORTHO05D007504 3.7e-89 332.4 286 56.6
BolC3t19616H Brassica oleracea HOM05D006178 ORTHO05D007504 3.7e-89 332.4 286 56.6
Aqoxy3G00007 Aquilegia oxysepala HOM05D006178 ORTHO05D007504 4.9e-89 332.0 312 55.4
Aa31LG7G9330 Aethionema arabicum HOM05D006178 ORTHO05D007504 5.4e-88 328.6 302 53.3
SGA_v2.0_scaffold23G10206 Striga asiatica HOM05D006178 ORTHO05D007504 5.8e-82 308.5 282 56.4
Zm00001eb009130 Zea mays HOM05D006178 ORTHO05D007504 4.9e-81 305.4 304 53.3
Os03g0223900 Oryza sativa ssp. japonica HOM05D006178 ORTHO05D007504 1.4e-80 303.9 303 50.5
unitig_22.g5599 Utricularia gibba HOM05D000369 ORTHO05D000253 3.2e-80 302.8 306 53.6
Sabra10G0077800 Salix brachista HOM05D006178 ORTHO05D007504 2.4e-75 286.6 276 55.1
Sed0021590 Sechium edule HOM05D006178 ORTHO05D007504 5.2e-75 285.4 228 60.5
CANSAT01G0234 Cannabis sativa HOM05D006178 ORTHO05D007504 6.9e-75 285.0 248 58.1
HPP92_013128 Vanilla planifolia HOM05D006178 ORTHO05D007504 4.4e-74 282.3 267 54.7
RcHm_v2.0_Chr7g0235121 Rosa chinensis HOM05D006178 ORTHO05D007504 5.8e-74 282.0 207 66.7
ATR0753G153 Amborella trichopoda HOM05D006178 ORTHO05D007504 1.3e-73 280.8 283 52.3
Nitab4.5_0000018g0160 Nicotiana tabacum HOM05D006178 ORTHO05D007504 7.1e-72 275.0 215 61.9
Pp3c3_1850 Physcomitrium patens HOM05D006178 ORTHO05D007504 7.1e-72 275.0 286 49.7
Mapoly0012s0127 Marchantia polymorpha HOM05D006178 ORTHO05D007504 3.9e-70 269.2 295 47.5
CSS0005024 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 1.3e-68 264.2 185 68.1
CSS0001732 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 2.8e-68 263.1 184 68.5
Nitab4.5_0009975g0010 Nicotiana tabacum HOM05D006178 ORTHO05D007504 1.9e-64 250.4 239 53.6
Gohir.D08G117400 Gossypium hirsutum HOM05D006178 ORTHO05D007504 6.0e-63 245.4 198 58.6
HPP92_013158 Vanilla planifolia HOM05D006178 ORTHO05D007504 1.8e-62 243.8 210 56.2
Gohir.D13G135551 Gossypium hirsutum HOM05D006178 ORTHO05D007504 6.7e-62 241.9 204 57.4
Gorai.001G151600 Gossypium raimondii HOM05D006178 ORTHO05D007504 4.3e-61 239.2 188 59.0
Gohir.D10G193800 Gossypium hirsutum HOM05D006178 ORTHO05D007504 5.6e-61 238.8 193 59.1
Gohir.D07G139600 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.6e-60 237.3 188 59.0
Gorai.010G050600 Gossypium raimondii HOM05D006178 ORTHO05D007504 2.1e-60 236.9 193 59.1
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 1.1e-59 234.6 230 53.0
SMO232G0119 Selaginella moellendorffii HOM05D006178 ORTHO05D007504 6.4e-57 225.3 295 43.4
CBR_g12524 Chara braunii HOM05D006178 ORTHO05D007504 2.1e-55 220.3 383 37.1
Gohir.D11G251901 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.3e-54 217.6 188 55.9
TAR629G3300 Trochodendron aralioides HOM05D006178 ORTHO05D007504 8.2e-52 208.4 187 56.1
Gorai.005G149500 Gossypium raimondii HOM05D006178 ORTHO05D007504 4.0e-51 206.1 198 52.0
Gorai.005G145500 Gossypium raimondii HOM05D006178 ORTHO05D007504 9.7e-45 184.9 208 47.6
MCO09G291 Micromonas commoda HOM05D006178 ORTHO05D007504 7.6e-42 175.3 292 38.4
SEGI_10880 Sequoiadendron giganteum HOM05D006178 ORTHO05D007504 2.5e-40 170.2 192 46.9
TAR629G1361 Trochodendron aralioides HOM05D006178 ORTHO05D007504 1.0e-38 164.9 106 72.6
PRCOL_00001866 Prasinoderma coloniale HOM05D006178 ORTHO05D007504 3.9e-38 162.9 315 33.7
AagrBONN_evm.TU.Sc2ySwM_340.423 Anthoceros agrestis HOM05D006178 ORTHO05D007504 3.7e-36 156.4 186 46.8
CSS0007559 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 9.1e-35 151.8 104 67.3
CSS0004101 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 2.0e-34 150.6 104 66.3
Gohir.D11G228700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 4.5e-34 149.4 119 59.7
Gorai.007G245600 Gossypium raimondii HOM05D006178 ORTHO05D007504 5.9e-34 149.1 119 58.8
Gorai.009G391300 Gossypium raimondii HOM05D006178 ORTHO05D007504 3.2e-32 143.3 108 63.9
CARHR026360 Cardamine hirsuta HOM05D006178 ORTHO05D007504 7.2e-32 142.1 122 56.6
QL03p035827 Quercus lobata HOM05D006178 ORTHO05D007504 2.3e-30 137.1 103 65.0
Ca_29306_v3 Cicer arietinum L. HOM05D001616 ORTHO05D007504 7.0e-27 125.6 290 31.4
Nn3g18364 Nelumbo nucifera HOM05D006178 ORTHO05D007504 7.7e-26 122.1 116 54.3
Cre16.g653350 Chlamydomonas reinhardtii HOM05D006178 ORTHO05D007504 3.2e-24 116.7 272 30.9
Glyma.13G258800 Glycine max HOM05D006178 ORTHO05D007504 1.8e-19 100.9 85 54.1
Glyma.13G368200 Glycine max HOM05D006178 ORTHO05D007504 1.8e-19 100.9 85 54.1
Nn3g18365 Nelumbo nucifera HOM05D006178 ORTHO05D007504 3.1e-19 100.1 62 72.6
Sed0025662 Sechium edule HOM05D006178 ORTHO05D007504 8.2e-12 75.5 44 77.3
MCO05G527 Micromonas commoda HOM05D014289 ORTHO05D018957 1.5e-08 64.7 128 37.5
Gohir.D08G060150 Gossypium hirsutum HOM05D006178 ORTHO05D007504 5.2e-06 56.2 39 61.5


User provided reference genes

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