Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0473541 Helianthus annuus HOM05D003836 ORTHO05D004556 6.3e-88 327.4 166 100.0
Lsat_1_v5_gn_3_104360 Lactuca sativa HOM05D003836 ORTHO05D004556 1.5e-76 289.7 164 85.4
Lj6A734G74 Lonicera japonica HOM05D003836 ORTHO05D004556 4.9e-72 274.6 164 79.3
CSS0006660 Camellia sinensis var. sinensis HOM05D003836 ORTHO05D004556 6.0e-70 267.7 164 77.4
Migut.E00502 Erythranthe guttata HOM05D003836 ORTHO05D004556 1.5e-68 263.1 164 77.4
Manes.15G136900 Manihot esculenta HOM05D003836 ORTHO05D004556 3.3e-68 261.9 166 75.3
Aqoxy6G01037 Aquilegia oxysepala HOM05D003836 ORTHO05D004556 4.3e-68 261.5 164 75.6
CiPaw.05G187900 Carya illinoinensis HOM05D003836 ORTHO05D004556 2.8e-67 258.8 166 74.7
Gorai.008G170400 Gossypium raimondii HOM05D003836 ORTHO05D004556 4.7e-67 258.1 164 73.8
Ciclev10014689m.g Citrus clementina HOM05D003836 ORTHO05D004556 1.1e-66 256.9 161 73.9
Cfa015051 Carpinus fangiana HOM05D003836 ORTHO05D004556 1.4e-66 256.5 161 75.2
Manes.17G086000 Manihot esculenta HOM05D003836 ORTHO05D004556 1.4e-66 256.5 161 74.5
Gohir.A13G027900 Gossypium hirsutum HOM05D003836 ORTHO05D004556 1.8e-66 256.1 161 75.2
Sc10g0004880 Simmondsia chinensis HOM05D003836 ORTHO05D004556 1.8e-66 256.1 164 73.8
Thecc.02G307000 Theobroma cacao HOM05D003836 ORTHO05D004556 1.8e-66 256.1 161 74.5
FAN07G2679 Fragaria x ananassa HOM05D003836 ORTHO05D004556 3.1e-66 255.4 161 73.9
FAN22G0514 Fragaria x ananassa HOM05D003836 ORTHO05D004556 3.1e-66 255.4 161 73.9
FvH4_4g33240 Fragaria vesca HOM05D003836 ORTHO05D004556 4.0e-66 255.0 161 73.3
FAN12G1258 Fragaria x ananassa HOM05D003836 ORTHO05D004556 4.0e-66 255.0 161 73.3
FAN17G2261 Fragaria x ananassa HOM05D003836 ORTHO05D004556 4.0e-66 255.0 161 73.3
QL03p038287 Quercus lobata HOM05D003836 ORTHO05D004556 4.0e-66 255.0 161 75.8
Atru.chr11.806 Acer truncatum HOM05D003836 ORTHO05D004556 5.2e-66 254.6 161 73.3
Haze_10840 Corylus avellana HOM05D003836 ORTHO05D004556 5.2e-66 254.6 161 73.9
TAR374G0617 Trochodendron aralioides HOM05D003836 ORTHO05D004556 5.2e-66 254.6 166 74.1
Lj1g0024673 Lotus japonicus HOM05D003836 ORTHO05D004556 6.8e-66 254.2 166 73.5
RcHm_v2.0_Chr4g0442391 Rosa chinensis HOM05D003836 ORTHO05D004556 8.9e-66 253.8 161 72.7
ECA246G1487 Erigeron canadensis HOM05D003836 ORTHO05D004556 1.2e-65 253.4 149 87.2
Duzib268G0198 Durio zibethinus HOM05D003836 ORTHO05D004556 1.5e-65 253.1 161 74.5
Nitab4.5_0001227g0030 Nicotiana tabacum HOM05D003836 ORTHO05D004556 1.5e-65 253.1 164 74.4
Phvul.009G172600 Phaseolus vulgaris HOM05D003836 ORTHO05D004556 1.5e-65 253.1 161 73.3
PGR142G3191 Punica granatum HOM05D003836 ORTHO05D004556 1.5e-65 253.1 164 73.8
Glyma.04G189300 Glycine max HOM05D003836 ORTHO05D004556 2.0e-65 252.7 161 73.3
Nn4g24475 Nelumbo nucifera HOM05D003836 ORTHO05D004556 2.0e-65 252.7 166 75.9
PSO782G5172 Papaver somniferum HOM05D003836 ORTHO05D004556 3.4e-65 251.9 166 72.9
Hma1.2p1_2859F.1_g329510 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 4.4e-65 251.5 158 75.3
Lalb_Chr11g0070001 Lupinus albus HOM05D003836 ORTHO05D004556 4.4e-65 251.5 166 72.3
PSO063G7099 Papaver somniferum HOM05D003836 ORTHO05D004556 4.4e-65 251.5 166 72.3
TPR.G35600 Trifolium pratense HOM05D003836 ORTHO05D004556 4.4e-65 251.5 166 71.7
MD16G1015700 Malus domestica HOM05D003836 ORTHO05D004556 7.5e-65 250.8 161 73.9
Medtr3g076570 Medicago truncatula HOM05D003836 ORTHO05D004556 7.5e-65 250.8 166 71.7
Atru.chr7.2694 Acer truncatum HOM05D003836 ORTHO05D004556 9.9e-65 250.4 161 72.7
VMungo1309G0617 Vigna mungo HOM05D003836 ORTHO05D004556 9.9e-65 250.4 161 72.0
Gorai.013G030000 Gossypium raimondii HOM05D003836 ORTHO05D004556 1.3e-64 250.0 161 73.3
TWI74G0623 Tripterygium wilfordii HOM05D003836 ORTHO05D004556 1.3e-64 250.0 164 68.9
Ca_16122_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 2.9e-64 248.8 166 71.1
TAR622G1236 Trochodendron aralioides HOM05D003836 ORTHO05D004556 2.9e-64 248.8 161 73.9
SalBow2G2298 Salvia bowleyana HOM05D003836 ORTHO05D004556 3.7e-64 248.4 189 66.7
Solyc06g051440.4 Solanum lycopersicum HOM05D003836 ORTHO05D004556 3.7e-64 248.4 164 73.2
Peaxi162Scf00825g00423 Petunia axillaris HOM05D003836 ORTHO05D004556 4.9e-64 248.1 162 74.1
GSVIVG01011621001 Vitis vinifera HOM05D003836 ORTHO05D004556 6.4e-64 247.7 166 72.3
Glyma.06G176300 Glycine max HOM05D003836 ORTHO05D004556 1.4e-63 246.5 161 72.0
Lalb_Chr23g0273381 Lupinus albus HOM05D003836 ORTHO05D004556 1.4e-63 246.5 166 70.5
arahy.Tifrunner.gnm1.ann1.36Q8NS Arachis hypogaea HOM05D003836 ORTHO05D004556 1.9e-63 246.1 164 68.9
Ah.02g131240 Amaranthus hybridus HOM05D003836 ORTHO05D004556 4.1e-63 245.0 164 71.3
DCAR_023556 Daucus carota HOM05D003836 ORTHO05D004556 4.1e-63 245.0 164 71.3
arahy.Tifrunner.gnm1.ann1.HCE13Z Arachis hypogaea HOM05D003836 ORTHO05D004556 5.4e-63 244.6 164 68.9
Cc11_g06410 Coffea canephora HOM05D003836 ORTHO05D004556 7.1e-63 244.2 165 71.5
Carub.0002s1445 Capsella rubella HOM05D003836 ORTHO05D004556 1.2e-62 243.4 167 70.1
AL2G26960 Arabidopsis lyrata HOM05D003836 ORTHO05D004556 2.1e-62 242.7 167 70.1
AT1G67960 Arabidopsis thaliana HOM05D003836 ORTHO05D004556 2.1e-62 242.7 167 70.1
Potri.010G103400 Populus trichocarpa HOM05D003836 ORTHO05D004556 3.5e-62 241.9 169 68.6
CARHR060610 Cardamine hirsuta HOM05D003836 ORTHO05D004556 4.6e-62 241.5 167 70.1
unitig_8.g4015 Utricularia gibba HOM05D003836 ORTHO05D004556 6.0e-62 241.1 165 69.7
Nn3g18432 Nelumbo nucifera HOM05D003836 ORTHO05D004556 1.0e-61 240.4 166 69.9
BcaB03g15387 Brassica carinata HOM05D003836 ORTHO05D004556 1.7e-61 239.6 167 68.3
Sabra10G0076000 Salix brachista HOM05D003836 ORTHO05D004556 2.3e-61 239.2 169 68.6
arahy.Tifrunner.gnm1.ann1.0AB4R7 Arachis hypogaea HOM05D003836 ORTHO05D004556 3.0e-61 238.8 164 68.9
arahy.Tifrunner.gnm1.ann1.6NWB5V Arachis hypogaea HOM05D003836 ORTHO05D004556 3.9e-61 238.4 164 68.9
Sp5g22940 Schrenkiella parvula HOM05D003836 ORTHO05D004556 3.9e-61 238.4 167 67.7
Aa31sc536G20 Aethionema arabicum HOM05D003836 ORTHO05D004556 5.1e-61 238.0 166 67.5
CANSAT78G2203 Cannabis sativa HOM05D003836 ORTHO05D004556 5.1e-61 238.0 161 70.2
Thhalv10018303m.g Eutrema salsugineum HOM05D003836 ORTHO05D004556 6.6e-61 237.7 167 67.7
Dinv02294 Davidia involucrata HOM05D003836 ORTHO05D004556 1.1e-60 236.9 149 76.5
BcaC08g46221 Brassica carinata HOM05D003836 ORTHO05D004556 1.9e-60 236.1 167 67.7
arahy.Tifrunner.gnm1.ann1.THT645 Arachis hypogaea HOM05D003836 ORTHO05D004556 3.3e-60 235.3 175 64.0
CsaV3_7G022080 Cucumis sativus L. HOM05D003836 ORTHO05D004556 9.6e-60 233.8 166 66.9
EL10Ac8g19453 Beta vulgaris HOM05D003836 ORTHO05D004556 1.6e-59 233.0 191 61.8
Eucgr.G02079 Eucalyptus grandis HOM05D003836 ORTHO05D004556 2.8e-59 232.3 161 68.9
Sed0017171 Sechium edule HOM05D003836 ORTHO05D004556 2.8e-59 232.3 166 67.5
arahy.Tifrunner.gnm1.ann1.FHB42U Arachis hypogaea HOM05D003836 ORTHO05D004556 4.7e-59 231.5 155 69.0
Psat7g111040 Pisum sativum HOM05D003836 ORTHO05D004556 1.1e-58 230.3 161 65.8
Glyma.07G191900 Glycine max HOM05D003836 ORTHO05D004556 1.8e-58 229.6 166 67.5
ClCG11G007570 Citrullus lanatus HOM05D003836 ORTHO05D004556 3.1e-58 228.8 166 66.3
Gohir.D13G026700 Gossypium hirsutum HOM05D003836 ORTHO05D004556 1.2e-57 226.9 163 69.3
ATR0021G013 Amborella trichopoda HOM05D003836 ORTHO05D004556 3.4e-57 225.3 161 65.2
TPR.G32436 Trifolium pratense HOM05D003836 ORTHO05D004556 1.7e-56 223.0 161 62.7
A07p34480 Brassica napus HOM05D003836 ORTHO05D004556 4.2e-55 218.4 150 68.0
Phvul.002G223900 Phaseolus vulgaris HOM05D003836 ORTHO05D004556 4.2e-55 218.4 166 65.7
Psat5g116920 Pisum sativum HOM05D003836 ORTHO05D004556 2.1e-54 216.1 141 71.6
Zm00001eb216180 Zea mays HOM05D003836 ORTHO05D004556 8.7e-53 210.7 162 62.3
Glyma.13G184600 Glycine max HOM05D003836 ORTHO05D004556 1.9e-52 209.5 150 67.3
Prupe.1G335900 Prunus persica HOM05D003836 ORTHO05D004556 2.1e-51 206.1 161 63.4
MELO3C013236.2 Cucumis melo HOM05D003836 ORTHO05D004556 3.1e-50 202.2 145 66.2
VMungo0251G2034 Vigna mungo HOM05D003836 ORTHO05D004556 9.0e-50 200.7 148 65.5
Nitab4.5_0001516g0010 Nicotiana tabacum HOM05D003836 ORTHO05D004556 9.9e-49 197.2 133 72.9
Pp3c12_1050 Physcomitrium patens HOM05D003836 ORTHO05D004556 1.2e-46 190.3 167 55.7
BcaB03g15147 Brassica carinata HOM05D003836 ORTHO05D004556 4.6e-46 188.3 122 70.5
C06p42030 Brassica napus HOM05D003836 ORTHO05D004556 1.5e-44 183.3 122 68.9
BolC6t39223H Brassica oleracea HOM05D003836 ORTHO05D004556 1.5e-44 183.3 122 68.9
MD13G1017700 Malus domestica HOM05D003836 ORTHO05D004556 1.5e-44 183.3 119 71.4
Dinv32673 Davidia involucrata HOM05D003836 ORTHO05D004556 2.1e-43 179.5 164 57.9
BcaC08g46015 Brassica carinata HOM05D003836 ORTHO05D004556 2.4e-42 176.0 143 62.2
COL.COLO4_27608 Corchorus olitorius HOM05D003836 ORTHO05D004556 3.8e-40 168.7 98 80.6
AagrBONN_evm.TU.Sc2ySwM_228.1822 Anthoceros agrestis HOM05D003836 ORTHO05D004556 1.1e-39 167.2 163 51.5
Duzib251G0897 Durio zibethinus HOM05D003836 ORTHO05D004556 1.9e-39 166.4 161 55.3
Gohir.A12G154400 Gossypium hirsutum HOM05D003836 ORTHO05D004556 7.1e-39 164.5 98 77.6
Gohir.D12G157600 Gossypium hirsutum HOM05D003836 ORTHO05D004556 7.1e-39 164.5 98 77.6
Mapoly0019s0007 Marchantia polymorpha HOM05D003836 ORTHO05D004556 5.1e-37 158.3 154 48.7
SGA_v2.0_scaffold23G10153 Striga asiatica HOM05D003836 ORTHO05D004556 1.9e-36 156.4 138 60.1
Cpa.g.sc2.157 Carica papaya HOM05D003836 ORTHO05D004556 4.3e-36 155.2 106 70.8
AUR62042201 Chenopodium quinoa HOM05D003836 ORTHO05D004556 5.6e-36 154.8 114 66.7
Medtr4g090465 Medicago truncatula HOM05D003836 ORTHO05D004556 3.7e-35 152.1 97 73.2
AUR62033051 Chenopodium quinoa HOM05D003836 ORTHO05D004556 4.9e-32 141.7 97 74.2
SMO358G0292 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 6.5e-32 141.4 156 44.2
C06p38100 Brassica napus HOM05D003836 ORTHO05D004556 3.9e-29 132.1 239 35.6
BolC6t38907H Brassica oleracea HOM05D003836 ORTHO05D004556 3.9e-29 132.1 239 35.6
SHI04351 Sapria himalayana HOM05D003836 ORTHO05D004556 5.1e-29 131.7 159 44.7
Os03g0715400 Oryza sativa ssp. japonica HOM05D003836 ORTHO05D004556 3.7e-27 125.6 72 79.2
Ca_18504_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 2.0e-25 119.8 93 67.7
arahy.Tifrunner.gnm1.ann1.ANFG2H Arachis hypogaea HOM05D003836 ORTHO05D004556 1.8e-21 106.7 90 56.7
arahy.Tifrunner.gnm1.ann1.I9RBIQ Arachis hypogaea HOM05D003836 ORTHO05D004556 3.0e-21 105.9 63 76.2
Cpa.g.sc2.159 Carica papaya HOM05D003836 ORTHO05D004556 2.0e-17 93.2 64 62.5
TPR.G24606 Trifolium pratense HOM05D003836 ORTHO05D004556 1.9e-15 86.7 69 56.5
MCO03G489 Micromonas commoda HOM05D003836 ORTHO05D004556 5.1e-13 78.6 114 37.7
DCAR_030293 Daucus carota HOM05D003836 ORTHO05D004556 2.0e-12 76.6 45 77.8
PRCOL_00001721 Prasinoderma coloniale HOM05D003836 ORTHO05D004556 3.3e-12 75.9 165 33.3
Cre02.g091000 Chlamydomonas reinhardtii HOM05D003836 ORTHO05D004556 3.1e-10 69.3 160 24.4
arahy.Tifrunner.gnm1.ann1.70DEUR Arachis hypogaea HOM05D000602 ORTHO05D004556 1.0e-08 64.3 36 80.6
RcHm_v2.0_Chr4g0390701 Rosa chinensis HOM05D003836 ORTHO05D004556 1.1e-07 60.8 39 69.2


User provided reference genes

Program Settings