Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0470411 Helianthus annuus HOM05D005402 ORTHO05D007036 0.0e+00 1273.1 647 100.0
Lsat_1_v5_gn_7_16460 Lactuca sativa HOM05D005402 ORTHO05D007036 4.8e-301 1037.3 652 80.7
ECA236G3723 Erigeron canadensis HOM05D005402 ORTHO05D000490 3.0e-287 991.5 653 76.9
Dinv13911 Davidia involucrata HOM05D005402 ORTHO05D007036 3.8e-261 904.8 658 69.9
Hma1.2p1_0412F.1_g147300 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 1.2e-254 883.2 652 67.3
CSS0005702 Camellia sinensis var. sinensis HOM05D005402 ORTHO05D007036 4.4e-254 881.3 652 68.6
GSVIVG01012705001 Vitis vinifera HOM05D005402 ORTHO05D007036 1.8e-247 859.4 657 66.2
Sopen02g011290 Solanum pennellii HOM05D005402 ORTHO05D007036 2.2e-245 852.4 657 64.7
PGSC0003DMG400022060 Solanum tuberosum HOM05D005402 ORTHO05D007036 8.4e-245 850.5 657 64.7
Solyc02g032920.3 Solanum lycopersicum HOM05D005402 ORTHO05D007036 3.2e-244 848.6 657 64.4
Cfa000204 Carpinus fangiana HOM05D005402 ORTHO05D007036 7.9e-243 844.0 652 66.1
Haze_06819 Corylus avellana HOM05D005402 ORTHO05D007036 1.8e-242 842.8 652 65.6
CAN.G128.67 Capsicum annuum HOM05D005402 ORTHO05D007036 1.5e-241 839.7 657 63.9
Nitab4.5_0004712g0050 Nicotiana tabacum HOM05D005402 ORTHO05D007036 1.4e-239 833.2 630 66.2
vmacro15795 Vaccinium macrocarpon HOM05D005402 ORTHO05D007036 7.6e-238 827.4 659 62.1
Dinv20063 Davidia involucrata HOM05D005402 ORTHO05D007036 1.7e-237 826.2 658 64.6
Oeu040335.1 Olea europaea HOM05D005402 ORTHO05D007036 2.2e-237 825.9 658 63.2
Migut.M01334 Erythranthe guttata HOM05D005402 ORTHO05D007036 8.4e-237 823.9 649 62.7
Nitab4.5_0000005g0240 Nicotiana tabacum HOM05D005402 ORTHO05D007036 2.3e-234 815.8 633 65.1
Prupe.4G224400 Prunus persica HOM05D005402 ORTHO05D007036 3.0e-234 815.5 655 62.7
MSTRG.7199 Avicennia marina HOM05D005402 ORTHO05D007036 4.3e-233 811.6 658 62.3
Atru.chr10.2252 Acer truncatum HOM05D005402 ORTHO05D007036 1.4e-231 806.6 655 61.4
Ciclev10014465m.g Citrus clementina HOM05D005402 ORTHO05D007036 3.1e-231 805.4 654 61.6
Peaxi162Scf00307g01422 Petunia axillaris HOM05D005402 ORTHO05D007036 5.3e-231 804.7 663 61.5
Duzib235G0987 Durio zibethinus HOM05D005402 ORTHO05D007036 1.5e-230 803.1 652 61.8
Cc09_g01510 Coffea canephora HOM05D005402 ORTHO05D007036 2.0e-230 802.7 656 61.1
Manes.16G005300 Manihot esculenta HOM05D005402 ORTHO05D007036 7.6e-230 800.8 653 61.9
Thecc.06G223300 Theobroma cacao HOM05D005402 ORTHO05D007036 1.0e-229 800.4 646 61.3
DCAR_028193 Daucus carota HOM05D000001 ORTHO05D007036 2.9e-229 798.9 677 60.4
QL05p072729 Quercus lobata HOM05D005402 ORTHO05D007036 1.4e-228 796.6 656 62.2
SalBow8G4792 Salvia bowleyana HOM05D005402 ORTHO05D007036 1.4e-228 796.6 656 61.0
PGR004G0080 Punica granatum HOM05D005402 ORTHO05D007036 3.2e-228 795.4 654 61.0
FAN08G3587 Fragaria x ananassa HOM05D005402 ORTHO05D007036 4.3e-225 785.0 651 61.0
Gohir.A05G171400 Gossypium hirsutum HOM05D005402 ORTHO05D007036 5.7e-225 784.6 652 59.5
Gohir.D05G174500 Gossypium hirsutum HOM05D005402 ORTHO05D007036 6.3e-224 781.2 652 59.4
Peaxi162Scf00394g00020 Petunia axillaris HOM05D005402 ORTHO05D007036 1.8e-223 779.6 654 61.3
Gorai.009G179800 Gossypium raimondii HOM05D005402 ORTHO05D007036 4.1e-223 778.5 654 59.6
RcHm_v2.0_Chr7g0223851 Rosa chinensis HOM05D005402 ORTHO05D007036 4.1e-223 778.5 655 60.8
Glyma.17G012200 Glycine max HOM05D005402 ORTHO05D007036 3.4e-222 775.4 655 60.3
arahy.Tifrunner.gnm1.ann1.I0ZCH2 Arachis hypogaea HOM05D005402 ORTHO05D007036 8.5e-221 770.8 652 59.4
Nn1g07183 Nelumbo nucifera HOM05D005402 ORTHO05D007036 4.2e-220 768.5 659 60.5
TAR629G0778 Trochodendron aralioides HOM05D005402 ORTHO05D007036 4.2e-220 768.5 659 60.2
COL.COLO4_31795 Corchorus olitorius HOM05D005402 ORTHO05D007036 9.4e-220 767.3 652 59.2
arahy.Tifrunner.gnm1.ann1.T40CTJ Arachis hypogaea HOM05D005402 ORTHO05D007036 1.6e-219 766.5 652 59.2
FAN18G2172 Fragaria x ananassa HOM05D005402 ORTHO05D007036 2.1e-219 766.1 656 59.8
Hund23456 Selenicereus undatus HOM05D005402 ORTHO05D007036 3.6e-219 765.4 656 57.3
Potri.007G040000 Populus trichocarpa HOM05D005402 ORTHO05D007036 4.6e-219 765.0 652 60.4
Ca_21074_v3 Cicer arietinum L. HOM05D005402 ORTHO05D007036 1.0e-218 763.8 666 58.7
ClCG01G021860 Citrullus lanatus HOM05D005402 ORTHO05D007036 2.5e-217 759.2 655 60.3
Phvul.003G080200 Phaseolus vulgaris HOM05D005402 ORTHO05D007036 2.5e-217 759.2 662 59.1
Sabra07G0036200 Salix brachista HOM05D005402 ORTHO05D007036 2.5e-217 759.2 658 58.8
Glyma.07G261900 Glycine max HOM05D005402 ORTHO05D007036 3.3e-217 758.8 658 59.3
Sed0000438 Sechium edule HOM05D005402 ORTHO05D007036 3.3e-217 758.8 651 61.0
FAN13G2175 Fragaria x ananassa HOM05D005402 ORTHO05D007036 5.7e-217 758.1 656 59.1
VMungo1215G1509 Vigna mungo HOM05D005402 ORTHO05D007036 7.4e-217 757.7 661 59.3
Medtr4g132340 Medicago truncatula HOM05D005402 ORTHO05D007036 9.7e-217 757.3 649 58.6
FAN04G1555 Fragaria x ananassa HOM05D005402 ORTHO05D007036 1.7e-216 756.5 655 58.9
FvH4_5g29980 Fragaria vesca HOM05D005402 ORTHO05D007036 2.2e-216 756.1 650 59.7
TPR.G36999 Trifolium pratense HOM05D005402 ORTHO05D007036 1.4e-215 753.4 648 58.6
Lj2C266G9 Lonicera japonica HOM05D005402 ORTHO05D007036 3.1e-215 752.3 649 63.0
Eucgr.D01347 Eucalyptus grandis HOM05D005402 ORTHO05D007036 4.5e-214 748.4 649 58.1
Aa31LG6G3970 Aethionema arabicum HOM05D005402 ORTHO05D007036 2.5e-212 742.7 650 58.3
CANSAT56G4097 Cannabis sativa HOM05D005402 ORTHO05D007036 2.5e-212 742.7 655 58.3
THA.LOC104806309 Tarenaya hassleriana HOM05D005402 ORTHO05D007036 3.2e-212 742.3 657 57.7
CsaV3_6G048920 Cucumis sativus L. HOM05D005402 ORTHO05D007036 2.1e-211 739.6 655 58.6
MELO3C007401.2 Cucumis melo HOM05D005402 ORTHO05D007036 4.7e-211 738.4 655 58.6
Carub.0007s1256 Capsella rubella HOM05D005402 ORTHO05D007036 6.1e-211 738.0 660 57.4
Sp7g26160 Schrenkiella parvula HOM05D005402 ORTHO05D007036 1.0e-210 737.3 657 57.5
AL7G24400 Arabidopsis lyrata HOM05D005402 ORTHO05D007036 2.6e-209 732.6 664 57.1
C08p10670 Brassica napus HOM05D005402 ORTHO05D007036 7.4e-209 731.1 652 57.1
BcaC07g38316 Brassica carinata HOM05D005402 ORTHO05D007036 1.3e-208 730.3 652 57.2
BolC8t48740H Brassica oleracea HOM05D005402 ORTHO05D007036 4.8e-208 728.4 652 57.1
PSO541G1465 Papaver somniferum HOM05D005402 ORTHO05D007036 5.9e-206 721.5 658 56.5
A08p20200 Brassica napus HOM05D005402 ORTHO05D007036 1.7e-205 719.9 655 56.8
BraA08t33979Z Brassica rapa HOM05D005402 ORTHO05D007036 1.7e-205 719.9 655 56.8
PSO675G3880 Papaver somniferum HOM05D005402 ORTHO05D007036 2.9e-205 719.2 658 56.4
MBI02_g15380_MAGBIO Magnolia biondii HOM05D005402 ORTHO05D007036 5.0e-205 718.4 668 56.7
CARHR235910 Cardamine hirsuta HOM05D005402 ORTHO05D007036 3.2e-204 715.7 660 56.7
AUR62015290 Chenopodium quinoa HOM05D005402 ORTHO05D007036 3.0e-202 709.1 655 54.2
Psat4g006080 Pisum sativum HOM05D005402 ORTHO05D007036 3.7e-200 702.2 662 54.8
Lj4g0015196 Lotus japonicus HOM05D005402 ORTHO05D007036 6.3e-200 701.4 654 56.1
Lalb_Chr07g0177141 Lupinus albus HOM05D005402 ORTHO05D007036 1.4e-199 700.3 655 55.3
BcaB03g12558 Brassica carinata HOM05D005402 ORTHO05D007036 1.8e-199 699.9 654 55.0
Ah.10g032740 Amaranthus hybridus HOM05D005402 ORTHO05D007036 7.0e-199 698.0 649 53.2
Actinidia11859 Actinidia chinensis HOM05D005402 ORTHO05D007036 4.5e-198 695.3 646 58.2
MD15G1066800 Malus domestica HOM05D005402 ORTHO05D007036 7.7e-198 694.5 657 54.2
TWI63G0339 Tripterygium wilfordii HOM05D005402 ORTHO05D007036 9.4e-196 687.6 655 54.0
AUR62032734 Chenopodium quinoa HOM05D005402 ORTHO05D007036 1.2e-195 687.2 666 52.6
Aqoxy1G03121 Aquilegia oxysepala HOM05D005402 ORTHO05D007036 2.1e-195 686.4 657 52.7
Thhalv10024642m.g Eutrema salsugineum HOM05D005402 ORTHO05D007036 2.7e-195 686.0 659 54.3
AT4G28200 Arabidopsis thaliana HOM05D005402 ORTHO05D007036 3.1e-191 672.5 660 53.6
Hma1.2p1_0412F.1_g147310 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 3.5e-190 669.1 485 67.4
unitig_748.g7549 Utricularia gibba HOM05D005402 ORTHO05D007036 6.1e-187 658.3 656 54.9
MD08G1079900 Malus domestica HOM05D005402 ORTHO05D007036 1.0e-186 657.5 656 52.0
Os02g0103900 Oryza sativa ssp. japonica HOM05D005402 ORTHO05D007036 1.7e-184 650.2 685 50.2
CiPaw.09G093500 Carya illinoinensis HOM05D005402 ORTHO05D007036 7.2e-180 634.8 507 64.3
CDE05G1008 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 2.5e-172 609.8 650 49.7
ATR0743G102 Amborella trichopoda HOM05D005402 ORTHO05D007036 4.6e-166 589.0 666 47.0
HPP92_012414 Vanilla planifolia HOM05D005402 ORTHO05D007036 4.3e-164 582.4 660 46.7
BcaB03g12559 Brassica carinata HOM05D005402 ORTHO05D007036 2.4e-138 496.9 420 60.0
Sc05g0009280 Simmondsia chinensis HOM05D005402 ORTHO05D007036 3.4e-137 493.0 360 67.8
Zm00001eb118290 Zea mays HOM05D005402 ORTHO05D007036 1.3e-136 491.1 521 49.5
SGA_v2.0_scaffold4G01907 Striga asiatica HOM05D005402 ORTHO05D007036 6.4e-136 488.8 617 45.9
SGA_v2.0_scaffold7G03813 Striga asiatica HOM05D005402 ORTHO05D007036 2.6e-129 466.8 486 49.4
EL10Ac3g06734 Beta vulgaris HOM05D005402 ORTHO05D007036 9.9e-129 464.9 368 64.4
Mapoly0165s0012 Marchantia polymorpha HOM05D005402 ORTHO05D007036 1.8e-117 427.6 661 36.0
SMO203G0067 Selaginella moellendorffii HOM05D005402 ORTHO05D007036 4.8e-107 392.9 641 36.2
Pp3c5_4450 Physcomitrium patens HOM05D005402 ORTHO05D007036 7.7e-97 359.0 657 35.0
AagrBONN_evm.TU.Sc2ySwM_228.882 Anthoceros agrestis HOM05D005402 ORTHO05D007036 3.5e-89 333.6 509 38.5
SEGI_35740 Sequoiadendron giganteum HOM05D005402 ORTHO05D007036 2.9e-88 330.5 364 47.0
Sc05g0009290 Simmondsia chinensis HOM05D005402 ORTHO05D007036 1.9e-79 301.2 284 53.2
CBR_g31384 Chara braunii HOM05D005402 ORTHO05D007036 3.1e-74 283.9 762 28.9
Cpa.g.sc1199.5 Carica papaya HOM05D005402 ORTHO05D007036 7.7e-73 279.3 271 52.0
CAN.G23.24 Capsicum annuum HOM05D005402 ORTHO05D007036 1.4e-66 258.5 270 49.6
EL10Ac3g06733 Beta vulgaris HOM05D005402 ORTHO05D007036 1.1e-63 248.8 367 36.8
Cre10.g442000 Chlamydomonas reinhardtii HOM05D005402 ORTHO05D007036 1.5e-55 221.9 702 26.5
RcHm_v2.0_Chr7g0223961 Rosa chinensis HOM05D005402 ORTHO05D007036 1.0e-53 215.7 237 47.7
RcHm_v2.0_Chr6g0291751 Rosa chinensis HOM05D005402 ORTHO05D007036 8.3e-43 179.5 233 45.5
RcHm_v2.0_Chr7g0223941 Rosa chinensis HOM05D005402 ORTHO05D007036 1.2e-30 139.0 79 75.9
RcHm_v2.0_Chr7g0223951 Rosa chinensis HOM05D005402 ORTHO05D007036 3.6e-30 137.5 127 57.5
SHI32968 Sapria himalayana HOM05D005402 ORTHO05D007036 1.4e-26 125.6 235 33.6
MCO01G148 Micromonas commoda HOM05D005402 ORTHO05D007036 2.1e-25 121.7 214 32.2
AagrBONN_evm.TU.Sc2ySwM_228.888 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.5e-23 115.5 101 49.5
Cfa022130 Carpinus fangiana HOM05D005402 ORTHO05D007036 6.9e-21 106.7 213 34.3
AagrBONN_evm.TU.Sc2ySwM_228.894 Anthoceros agrestis HOM05D005402 ORTHO05D007036 2.2e-19 101.7 86 46.5
Zm00001eb129750 Zea mays HOM05D005402 ORTHO05D007036 2.2e-19 101.7 210 32.4
SalBow7G0548 Salvia bowleyana HOM05D005402 ORTHO05D037500 3.8e-19 100.9 84 53.6
CARHR228840 Cardamine hirsuta HOM05D005402 ORTHO05D007036 4.2e-18 97.4 62 79.0
SalBow5G5666 Salvia bowleyana HOM05D005402 ORTHO05D037500 9.3e-18 96.3 101 47.5
SalBow1G2367 Salvia bowleyana HOM05D005402 ORTHO05D037500 1.3e-16 92.4 86 51.2
AagrBONN_evm.TU.Sc2ySwM_228.885 Anthoceros agrestis HOM05D005402 ORTHO05D007036 2.3e-16 91.7 156 34.0
Hma1.2p1_0660F.1_g197590 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 3.3e-15 87.8 69 62.3
Zm00001eb238100 Zea mays HOM05D005402 ORTHO05D007036 6.2e-14 83.6 90 47.8
A01p19620 Brassica napus HOM05D005402 ORTHO05D007036 4.5e-12 77.4 97 46.4
RcHm_v2.0_Chr6g0291761 Rosa chinensis HOM05D005402 ORTHO05D007036 1.1e-07 62.8 75 44.0
VMungo1215G1513 Vigna mungo HOM05D005402 ORTHO05D433923 2.8e-06 58.2 41 78.0


User provided reference genes

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