Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0469781 Helianthus annuus HOM05D001588 ORTHO05D006118 1.6e-42 175.6 87 100.0
HanXRQChr06g0165801 Helianthus annuus HOM05D001588 ORTHO05D006118 3.7e-23 111.3 76 69.7
Lj2A189T33 Lonicera japonica HOM05D001588 ORTHO05D006118 8.3e-23 110.2 80 65.0
TAR629G2281 Trochodendron aralioides HOM05D001588 ORTHO05D006118 1.4e-22 109.4 81 60.5
ECA246G0963 Erigeron canadensis HOM05D001588 ORTHO05D006118 1.9e-22 109.0 76 68.4
Lsat_1_v5_gn_3_7600 Lactuca sativa HOM05D001588 ORTHO05D006118 5.4e-22 107.5 76 68.4
Potri.001G106000 Populus trichocarpa HOM05D001588 ORTHO05D006118 5.4e-22 107.5 81 64.2
HPP92_008512 Vanilla planifolia HOM05D001588 ORTHO05D006118 5.4e-22 107.5 76 64.5
Manes.02G023300 Manihot esculenta HOM05D001588 ORTHO05D006118 9.2e-22 106.7 76 65.8
MSTRG.25594 Avicennia marina HOM05D001588 ORTHO05D006118 1.2e-21 106.3 78 64.1
DCAR_000604 Daucus carota HOM05D001588 ORTHO05D006118 1.2e-21 106.3 76 65.8
Sabra01G0080300 Salix brachista HOM05D001588 ORTHO05D006118 1.2e-21 106.3 81 64.2
GSVIVG01019772001 Vitis vinifera HOM05D001588 ORTHO05D006118 1.2e-21 106.3 76 67.1
vmacro13949 Vaccinium macrocarpon HOM05D001588 ORTHO05D006118 2.7e-21 105.1 81 60.5
Nitab4.5_0004836g0070 Nicotiana tabacum HOM05D001588 ORTHO05D006118 3.5e-21 104.8 80 58.8
Actinidia27390 Actinidia chinensis HOM05D001588 ORTHO05D006118 4.6e-21 104.4 80 61.2
CSS0006311 Camellia sinensis var. sinensis HOM05D001588 ORTHO05D006118 4.6e-21 104.4 76 64.5
CSS0014008 Camellia sinensis var. sinensis HOM05D001588 ORTHO05D006118 4.6e-21 104.4 76 64.5
RcHm_v2.0_Chr7g0198231 Rosa chinensis HOM05D001588 ORTHO05D006118 4.6e-21 104.4 76 67.1
Solyc08g008000.2 Solanum lycopersicum HOM05D001588 ORTHO05D006118 4.6e-21 104.4 78 61.5
Nitab4.5_0003907g0030 Nicotiana tabacum HOM05D001588 ORTHO05D006118 6.0e-21 104.0 78 60.3
SGA_v2.0_scaffold253G45125 Striga asiatica HOM05D001588 ORTHO05D006118 6.0e-21 104.0 78 64.1
FAN13G0628 Fragaria x ananassa HOM05D001588 ORTHO05D006118 1.0e-20 103.2 76 65.8
QL12p018372 Quercus lobata HOM05D001588 ORTHO05D006118 1.0e-20 103.2 76 63.2
Sp6g05900 Schrenkiella parvula HOM05D001588 ORTHO05D006118 1.0e-20 103.2 83 63.9
A02p26200 Brassica napus HOM05D001588 ORTHO05D006118 1.3e-20 102.8 76 65.8
BraA02t07619Z Brassica rapa HOM05D001588 ORTHO05D006118 1.3e-20 102.8 76 65.8
CAN.G792.82 Capsicum annuum HOM05D001588 ORTHO05D006118 1.3e-20 102.8 78 61.5
Dinv37655 Davidia involucrata HOM05D001588 ORTHO05D006118 1.3e-20 102.8 76 64.5
Manes.02G023000 Manihot esculenta HOM05D001588 ORTHO05D006118 1.3e-20 102.8 76 64.5
Prupe.5G097600 Prunus persica HOM05D001588 ORTHO05D006118 1.3e-20 102.8 76 64.5
Sopen08g003880 Solanum pennellii HOM05D001588 ORTHO05D006118 1.3e-20 102.8 78 60.3
PGSC0003DMG401014619 Solanum tuberosum HOM05D001588 ORTHO05D006118 1.3e-20 102.8 78 60.3
Aa31LG9G10710 Aethionema arabicum HOM05D001588 ORTHO05D006118 1.7e-20 102.4 76 67.1
Cfa012158 Carpinus fangiana HOM05D001588 ORTHO05D006118 1.7e-20 102.4 76 64.5
Haze_08869 Corylus avellana HOM05D001588 ORTHO05D006118 1.7e-20 102.4 76 64.5
FvH4_5g02070 Fragaria vesca HOM05D001588 ORTHO05D006118 1.7e-20 102.4 76 64.5
FAN18G1170 Fragaria x ananassa HOM05D001588 ORTHO05D006118 1.7e-20 102.4 76 64.5
TWI81G0248 Tripterygium wilfordii HOM05D001588 ORTHO05D006118 1.7e-20 102.4 76 64.5
Carub.0006s3072 Capsella rubella HOM05D001588 ORTHO05D006118 2.3e-20 102.1 76 65.8
CARHR254790 Cardamine hirsuta HOM05D001588 ORTHO05D006118 2.3e-20 102.1 76 65.8
FAN04G2309 Fragaria x ananassa HOM05D001588 ORTHO05D006118 2.3e-20 102.1 76 64.5
Peaxi162Scf00102g01542 Petunia axillaris HOM05D001588 ORTHO05D006118 2.3e-20 102.1 78 59.0
Solyc08g008010.4 Solanum lycopersicum HOM05D001588 ORTHO05D006118 2.3e-20 102.1 78 60.3
FAN08G1628 Fragaria x ananassa HOM05D001588 ORTHO05D006118 3.9e-20 101.3 76 65.8
PSO063G4356 Papaver somniferum HOM05D001588 ORTHO05D006118 3.9e-20 101.3 76 64.5
PSO170G0774 Papaver somniferum HOM05D001588 ORTHO05D006118 3.9e-20 101.3 76 64.5
Sopen08g003890 Solanum pennellii HOM05D001588 ORTHO05D006118 3.9e-20 101.3 78 59.0
Aqoxy5G04005 Aquilegia oxysepala HOM05D001588 ORTHO05D006118 5.1e-20 100.9 76 61.8
Rhsim07G0091600 Rhododendron simsii HOM05D001588 ORTHO05D006118 5.1e-20 100.9 81 59.3
Thhalv10028795m.g Eutrema salsugineum HOM05D001588 ORTHO05D006118 6.6e-20 100.5 76 64.5
Medtr7g103510 Medicago truncatula HOM05D001588 ORTHO05D006118 6.6e-20 100.5 81 60.5
PGSC0003DMG400005820 Solanum tuberosum HOM05D001588 ORTHO05D006118 6.6e-20 100.5 78 59.0
Hma1.2p1_1788F.1_g302410 Hydrangea macrophylla HOM05D001588 ORTHO05D006118 8.6e-20 100.1 76 64.5
MD06G1079200 Malus domestica HOM05D001588 ORTHO05D006118 8.6e-20 100.1 76 61.8
Atru.chr9.2223 Acer truncatum HOM05D001588 ORTHO05D006118 1.1e-19 99.8 76 63.2
BcaB05g23820 Brassica carinata HOM05D001588 ORTHO05D006118 1.1e-19 99.8 76 64.5
THA.LOC104806384 Tarenaya hassleriana HOM05D001588 ORTHO05D006118 1.1e-19 99.8 76 64.5
BcaC03g16342 Brassica carinata HOM05D001588 ORTHO05D006118 1.5e-19 99.4 76 63.2
C02p41670 Brassica napus HOM05D001588 ORTHO05D006118 1.5e-19 99.4 76 63.2
BolC2t10183H Brassica oleracea HOM05D001588 ORTHO05D006118 1.5e-19 99.4 76 63.2
Cc08_g14500 Coffea canephora HOM05D001588 ORTHO05D006118 1.5e-19 99.4 76 63.2
Thecc.03G276800 Theobroma cacao HOM05D001588 ORTHO05D006118 1.5e-19 99.4 76 61.8
CiPaw.11G137200 Carya illinoinensis HOM05D001588 ORTHO05D006118 1.9e-19 99.0 80 62.5
COL.COLO4_34441 Corchorus olitorius HOM05D001588 ORTHO05D006118 1.9e-19 99.0 76 60.5
Psat6g176200 Pisum sativum HOM05D001588 ORTHO05D006118 1.9e-19 99.0 81 59.3
Sed0017409 Sechium edule HOM05D001588 ORTHO05D006118 2.5e-19 98.6 76 59.2
VMungo0251G1987 Vigna mungo HOM05D001588 ORTHO05D006118 2.5e-19 98.6 81 59.3
AL6G46210 Arabidopsis lyrata HOM05D001588 ORTHO05D006118 3.3e-19 98.2 76 63.2
AT4G11640 Arabidopsis thaliana HOM05D001588 ORTHO05D006118 3.3e-19 98.2 76 64.5
arahy.Tifrunner.gnm1.ann1.C1C7DX Arachis hypogaea HOM05D001588 ORTHO05D006118 3.3e-19 98.2 76 63.2
Ciclev10021870m.g Citrus clementina HOM05D001588 ORTHO05D006118 3.3e-19 98.2 76 63.2
CsaV3_5G002940 Cucumis sativus L. HOM05D001588 ORTHO05D006118 3.3e-19 98.2 76 60.5
Migut.N01981 Erythranthe guttata HOM05D001588 ORTHO05D006118 3.3e-19 98.2 78 60.3
Oeu009178.1 Olea europaea HOM05D001588 ORTHO05D006118 3.3e-19 98.2 76 63.2
ClCG01G002850 Citrullus lanatus HOM05D001588 ORTHO05D006118 4.3e-19 97.8 76 60.5
Migut.N02016 Erythranthe guttata HOM05D001588 ORTHO05D006118 4.3e-19 97.8 78 60.3
Gorai.008G246100 Gossypium raimondii HOM05D001588 ORTHO05D006118 4.3e-19 97.8 76 57.9
Nn1g01478 Nelumbo nucifera HOM05D001588 ORTHO05D006118 4.3e-19 97.8 76 61.8
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 7.3e-19 97.1 76 63.2
Lj1g0021351 Lotus japonicus HOM05D001588 ORTHO05D006118 9.5e-19 96.7 81 56.8
Psat7g008360 Pisum sativum HOM05D001588 ORTHO05D006118 9.5e-19 96.7 81 58.0
Eucgr.D01864 Eucalyptus grandis HOM05D001588 ORTHO05D006118 1.2e-18 96.3 76 59.2
MELO3C005662.2 Cucumis melo HOM05D001588 ORTHO05D006118 1.6e-18 95.9 76 59.2
Gohir.A12G227500 Gossypium hirsutum HOM05D001588 ORTHO05D006118 1.6e-18 95.9 76 56.6
Gohir.D12G229800 Gossypium hirsutum HOM05D001588 ORTHO05D006118 1.6e-18 95.9 76 56.6
Lalb_Chr16g0389911 Lupinus albus HOM05D001588 ORTHO05D006118 1.6e-18 95.9 80 56.2
Psat7g034240 Pisum sativum HOM05D001588 ORTHO05D006118 2.1e-18 95.5 81 56.8
Lj1g0001953 Lotus japonicus HOM05D001588 ORTHO05D006118 2.8e-18 95.1 81 56.8
Os04g0555900 Oryza sativa ssp. japonica HOM05D001588 ORTHO05D006118 2.8e-18 95.1 76 55.3
SalBow3G3462 Salvia bowleyana HOM05D001588 ORTHO05D006118 2.8e-18 95.1 76 61.8
Sc07g0009680 Simmondsia chinensis HOM05D001588 ORTHO05D006118 2.8e-18 95.1 76 59.2
Lj4g0014630 Lotus japonicus HOM05D001588 ORTHO05D006118 3.6e-18 94.7 81 54.3
MBI18_g19084_MAGBIO Magnolia biondii HOM05D001588 ORTHO05D006118 4.7e-18 94.4 76 59.2
EL10Ac5g12783 Beta vulgaris HOM05D001588 ORTHO05D006118 8.1e-18 93.6 78 55.1
Medtr8g098460 Medicago truncatula HOM05D001588 ORTHO05D006118 1.1e-17 93.2 76 59.2
PGR031G0224 Punica granatum HOM05D001588 ORTHO05D006118 1.1e-17 93.2 81 55.6
CANSAT21G1717 Cannabis sativa HOM05D001588 ORTHO05D006118 1.4e-17 92.8 76 57.9
Phvul.002G288200 Phaseolus vulgaris HOM05D001588 ORTHO05D006118 1.4e-17 92.8 81 55.6
Ah.12g057170 Amaranthus hybridus HOM05D001588 ORTHO05D006118 2.4e-17 92.0 78 55.1
CANSAT21G1525 Cannabis sativa HOM05D001588 ORTHO05D006118 3.1e-17 91.7 76 57.9
Lj1g0019141 Lotus japonicus HOM05D001588 ORTHO05D006118 3.1e-17 91.7 76 57.9
Medtr1g056740 Medicago truncatula HOM05D001588 ORTHO05D006118 6.8e-17 90.5 76 56.6
Ca_17543_v3 Cicer arietinum L. HOM05D001588 ORTHO05D006118 1.2e-16 89.7 81 51.9
AagrBONN_evm.TU.Sc2ySwM_344.4994 Anthoceros agrestis HOM05D001588 ORTHO05D006118 1.5e-16 89.4 76 57.9
TPR.G12758 Trifolium pratense HOM05D001588 ORTHO05D006118 3.4e-16 88.2 76 56.6
Glyma.05G206600 Glycine max HOM05D001588 ORTHO05D006118 5.8e-16 87.4 98 46.9
SMO351G0491 Selaginella moellendorffii HOM05D001588 ORTHO05D006118 7.6e-16 87.0 81 51.9
SEGI_39536 Sequoiadendron giganteum HOM05D001588 ORTHO05D006118 1.3e-15 86.3 76 56.6
Mapoly0138s0043 Marchantia polymorpha HOM05D001588 ORTHO05D006118 8.4e-15 83.6 76 53.9
Hund14771 Selenicereus undatus HOM05D001588 ORTHO05D006118 2.4e-14 82.0 80 55.0
AagrBONN_evm.TU.Sc2ySwM_344.5005 Anthoceros agrestis HOM05D001588 ORTHO05D006118 4.2e-14 81.3 73 54.8
Cre06.g278101 Chlamydomonas reinhardtii HOM05D001588 ORTHO05D006118 1.0e-12 76.6 82 50.0
AUR62010596 Chenopodium quinoa HOM05D001588 ORTHO05D006118 1.3e-12 76.3 76 53.9
AUR62017239 Chenopodium quinoa HOM05D001588 ORTHO05D006118 3.9e-12 74.7 76 52.6
Sopen08g003870 Solanum pennellii HOM05D001588 ORTHO05D006118 3.3e-11 71.6 48 68.8
CBR_g31514 Chara braunii HOM05D001588 ORTHO05D006118 4.3e-11 71.2 77 49.4
PRCOL_00005312 Prasinoderma coloniale HOM05D001588 ORTHO05D006118 9.6e-11 70.1 78 46.2
MD06G1072900 Malus domestica HOM05D001588 ORTHO05D006118 1.8e-09 65.9 63 55.6
MCO03G466 Micromonas commoda HOM05D001588 ORTHO05D006118 3.4e-08 61.6 83 42.2
Actinidia33759 Actinidia chinensis HOM05D001588 ORTHO05D006118 5.8e-08 60.8 54 48.1
HanXRQChr15g0469571 Helianthus annuus HOM05D001588 ORTHO05D006118 7.6e-08 60.5 47 57.4
HanXRQChr15g0469621 Helianthus annuus HOM05D001588 ORTHO05D006118 7.6e-08 60.5 50 58.0
HanXRQChr15g0469771 Helianthus annuus HOM05D001588 ORTHO05D006118 7.6e-08 60.5 50 58.0
Cfa025518 Carpinus fangiana HOM05D001588 ORTHO05D006118 1.7e-07 59.3 86 41.9


User provided reference genes

Program Settings