Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0468331 Helianthus annuus HOM05D001304 ORTHO05D018604 6.7e-38 160.2 83 100.0
HanXRQChr12g0375551 Helianthus annuus HOM05D001304 ORTHO05D003803 2.2e-33 145.2 80 93.8
HanXRQChr14g0447101 Helianthus annuus HOM05D001304 ORTHO05D003803 6.1e-31 137.1 80 88.8
Lj4A176T36 Lonicera japonica HOM05D001304 ORTHO05D003803 1.4e-30 136.0 80 86.2
ECA238G0162 Erigeron canadensis HOM05D001304 ORTHO05D003803 1.8e-30 135.6 80 88.8
ECA246G4544 Erigeron canadensis HOM05D001304 ORTHO05D003803 1.8e-30 135.6 80 85.0
Atru.chr3.1159 Acer truncatum HOM05D001304 ORTHO05D003803 5.1e-30 134.0 80 82.5
Atru.chr3.1176 Acer truncatum HOM05D001304 ORTHO05D003803 5.1e-30 134.0 80 82.5
Gohir.A12G082400 Gossypium hirsutum HOM05D001304 ORTHO05D003803 5.1e-30 134.0 80 82.5
Gohir.D12G080400 Gossypium hirsutum HOM05D001304 ORTHO05D003803 5.1e-30 134.0 80 82.5
Duzib147G1544 Durio zibethinus HOM05D001304 ORTHO05D003803 8.8e-30 133.3 80 83.8
Gorai.008G088700 Gossypium raimondii HOM05D001304 ORTHO05D003803 1.5e-29 132.5 80 81.2
Hma1.2p1_0080F.1_g042070 Hydrangea macrophylla HOM05D001304 ORTHO05D003803 1.5e-29 132.5 80 82.5
Dinv27004 Davidia involucrata HOM05D001304 ORTHO05D003803 2.0e-29 132.1 80 83.8
HanXRQChr12g0355791 Helianthus annuus HOM05D001304 ORTHO05D018604 2.6e-29 131.7 80 85.0
SalBow3G2076 Salvia bowleyana HOM05D001304 ORTHO05D003803 2.6e-29 131.7 80 81.2
SalBow3G4364 Salvia bowleyana HOM05D001304 ORTHO05D003803 2.6e-29 131.7 80 81.2
Eucgr.I00594 Eucalyptus grandis HOM05D001304 ORTHO05D003803 3.3e-29 131.3 79 84.8
Oeu054746.2 Olea europaea HOM05D001304 ORTHO05D003803 3.3e-29 131.3 80 81.2
SGA_v2.0_scaffold121G33140 Striga asiatica HOM05D001304 ORTHO05D003803 3.3e-29 131.3 80 81.2
vmacro18038 Vaccinium macrocarpon HOM05D001304 ORTHO05D003803 3.3e-29 131.3 80 81.2
Nn1g05669 Nelumbo nucifera HOM05D001304 ORTHO05D003803 5.7e-29 130.6 80 82.5
Aqoxy6G00643 Aquilegia oxysepala HOM05D001304 ORTHO05D003803 7.4e-29 130.2 80 78.8
Sabra14G0001500 Salix brachista HOM05D001304 ORTHO05D003803 7.4e-29 130.2 80 82.5
Sabra14G0004300 Salix brachista HOM05D001304 ORTHO05D003803 7.4e-29 130.2 80 82.5
CSS0022889 Camellia sinensis var. sinensis HOM05D001304 ORTHO05D003803 9.7e-29 129.8 80 81.2
CSS0036027 Camellia sinensis var. sinensis HOM05D001304 ORTHO05D003803 9.7e-29 129.8 80 81.2
CiPaw.08G145000 Carya illinoinensis HOM05D001304 ORTHO05D003803 9.7e-29 129.8 80 82.5
Glyma.09G202100 Glycine max HOM05D001304 ORTHO05D003803 9.7e-29 129.8 80 82.5
TWI53G1123 Tripterygium wilfordii HOM05D001304 ORTHO05D003803 9.7e-29 129.8 80 80.0
Actinidia22785 Actinidia chinensis HOM05D001304 ORTHO05D003803 1.3e-28 129.4 80 81.2
Cpa.g.sc129.15 Carica papaya HOM05D001304 ORTHO05D003803 1.3e-28 129.4 80 80.0
Eucgr.L02517 Eucalyptus grandis HOM05D001304 ORTHO05D003803 1.3e-28 129.4 77 85.7
PGR031G2110 Punica granatum HOM05D001304 ORTHO05D003803 1.3e-28 129.4 80 80.0
arahy.Tifrunner.gnm1.ann1.2M0S5R Arachis hypogaea HOM05D001304 ORTHO05D003803 1.7e-28 129.0 80 81.2
Cfa006834 Carpinus fangiana HOM05D001304 ORTHO05D003803 1.7e-28 129.0 80 81.2
MBI16_g10449_MAGBIO Magnolia biondii HOM05D001304 ORTHO05D003803 1.7e-28 129.0 80 80.0
Medtr5g030940 Medicago truncatula HOM05D001304 ORTHO05D003803 1.7e-28 129.0 80 81.2
Sopen02g036200 Solanum pennellii HOM05D001304 ORTHO05D003803 1.7e-28 129.0 80 81.2
PGSC0003DMG400030613 Solanum tuberosum HOM05D001304 ORTHO05D003803 1.7e-28 129.0 80 81.2
Thecc.01G084400 Theobroma cacao HOM05D001304 ORTHO05D003803 1.7e-28 129.0 80 81.2
Ah.02g129170 Amaranthus hybridus HOM05D001304 ORTHO05D003803 2.2e-28 128.6 80 81.2
CSS0037118 Camellia sinensis var. sinensis HOM05D001304 ORTHO05D003803 2.2e-28 128.6 80 81.2
Peaxi162Scf00703g00111 Petunia axillaris HOM05D001304 ORTHO05D003803 2.2e-28 128.6 80 81.2
TAR381G0455 Trochodendron aralioides HOM05D001304 ORTHO05D003803 2.2e-28 128.6 80 80.0
Carub.0008s2649 Capsella rubella HOM05D001304 ORTHO05D003803 2.8e-28 128.3 80 81.2
Ca_13465_v3 Cicer arietinum L. HOM05D001304 ORTHO05D003803 2.8e-28 128.3 80 80.0
Nitab4.5_0000291g0100 Nicotiana tabacum HOM05D001304 ORTHO05D003803 2.8e-28 128.3 80 80.0
PSO478G2230 Papaver somniferum HOM05D001304 ORTHO05D003803 2.8e-28 128.3 80 78.8
Prupe.6G167100 Prunus persica HOM05D001304 ORTHO05D003803 2.8e-28 128.3 80 80.0
TPR.G19314 Trifolium pratense HOM05D001304 ORTHO05D003803 2.8e-28 128.3 80 80.0
Cc07_g07930 Coffea canephora HOM05D001304 ORTHO05D003803 3.7e-28 127.9 80 80.0
MD01G1044200 Malus domestica HOM05D001304 ORTHO05D003803 3.7e-28 127.9 80 81.2
Nitab4.5_0007512g0010 Nicotiana tabacum HOM05D001304 ORTHO05D003803 3.7e-28 127.9 80 80.0
Potri.014G010100 Populus trichocarpa HOM05D001304 ORTHO05D003803 3.7e-28 127.9 80 81.2
Prupe.6G209200 Prunus persica HOM05D001304 ORTHO05D003803 3.7e-28 127.9 80 80.0
Aa31LG1G16440 Aethionema arabicum HOM05D001304 ORTHO05D003803 4.8e-28 127.5 80 77.5
CiPaw.07G043000 Carya illinoinensis HOM05D001304 ORTHO05D003803 4.8e-28 127.5 80 80.0
Gohir.D11G214900 Gossypium hirsutum HOM05D001304 ORTHO05D003803 4.8e-28 127.5 79 79.7
Gorai.007G230700 Gossypium raimondii HOM05D001304 ORTHO05D003803 4.8e-28 127.5 79 79.7
Oeu007434.1 Olea europaea HOM05D001304 ORTHO05D003803 4.8e-28 127.5 80 78.8
Psat2g133960 Pisum sativum HOM05D001304 ORTHO05D003803 4.8e-28 127.5 80 80.0
BcaC03g13317 Brassica carinata HOM05D001304 ORTHO05D003803 6.3e-28 127.1 80 78.8
A02p00550 Brassica napus HOM05D001304 ORTHO05D003803 6.3e-28 127.1 80 78.8
C02p04530 Brassica napus HOM05D001304 ORTHO05D003803 6.3e-28 127.1 80 78.8
BolC2t06413H Brassica oleracea HOM05D001304 ORTHO05D003803 6.3e-28 127.1 80 78.8
BraA02t05038Z Brassica rapa HOM05D001304 ORTHO05D003803 6.3e-28 127.1 80 78.8
COL.COLO4_11684 Corchorus olitorius HOM05D001304 ORTHO05D003803 6.3e-28 127.1 80 77.5
Haze_03928 Corylus avellana HOM05D001304 ORTHO05D003803 6.3e-28 127.1 80 80.0
FvH4_1g19050 Fragaria vesca HOM05D001304 ORTHO05D003803 6.3e-28 127.1 80 80.0
FAN19G0255 Fragaria x ananassa HOM05D001304 ORTHO05D003803 6.3e-28 127.1 80 80.0
FAN26G1340 Fragaria x ananassa HOM05D001304 ORTHO05D003803 6.3e-28 127.1 80 80.0
FAN28G2550 Fragaria x ananassa HOM05D001304 ORTHO05D003803 6.3e-28 127.1 80 80.0
Glyma.01G020300 Glycine max HOM05D001304 ORTHO05D003803 6.3e-28 127.1 80 80.0
Lsat_1_v5_gn_2_82261 Lactuca sativa HOM05D001304 ORTHO05D003803 6.3e-28 127.1 80 81.2
RcHm_v2.0_Chr2g0110061 Rosa chinensis HOM05D001304 ORTHO05D003803 6.3e-28 127.1 80 80.0
AT5G10540 Arabidopsis thaliana HOM05D001304 ORTHO05D003803 8.2e-28 126.7 80 78.8
AUR62032883 Chenopodium quinoa HOM05D001304 ORTHO05D003803 8.2e-28 126.7 80 81.2
Ciclev10024919m.g Citrus clementina HOM05D001304 ORTHO05D003803 8.2e-28 126.7 80 80.0
VMungo1215G0027 Vigna mungo HOM05D001304 ORTHO05D003803 8.2e-28 126.7 80 80.0
Actinidia15931 Actinidia chinensis HOM05D001304 ORTHO05D003803 1.1e-27 126.3 80 78.8
BcaB05g21489 Brassica carinata HOM05D001304 ORTHO05D003803 1.1e-27 126.3 80 77.5
AUR62005895 Chenopodium quinoa HOM05D001304 ORTHO05D003803 1.1e-27 126.3 80 82.5
Gohir.A11G208500 Gossypium hirsutum HOM05D001304 ORTHO05D003803 1.1e-27 126.3 79 78.5
Phvul.002G143600 Phaseolus vulgaris HOM05D001304 ORTHO05D003803 1.1e-27 126.3 80 80.0
Sp6g32890 Schrenkiella parvula HOM05D001304 ORTHO05D003803 1.1e-27 126.3 80 77.5
CAN.G1061.30 Capsicum annuum HOM05D001304 ORTHO05D003803 1.4e-27 125.9 80 78.8
Lalb_Chr05g0216211 Lupinus albus HOM05D001304 ORTHO05D003803 1.4e-27 125.9 80 78.8
Manes.12G121600 Manihot esculenta HOM05D001304 ORTHO05D003803 1.4e-27 125.9 80 78.8
PSO017G2184 Papaver somniferum HOM05D001304 ORTHO05D003803 1.4e-27 125.9 80 77.5
GSVIVG01003850001 Vitis vinifera HOM05D001304 ORTHO05D003803 1.4e-27 125.9 80 80.0
AL112U10040 Arabidopsis lyrata HOM05D001304 ORTHO05D003803 1.8e-27 125.6 80 78.8
AT5G65620 Arabidopsis thaliana HOM05D001304 ORTHO05D003803 1.8e-27 125.6 80 78.8
arahy.Tifrunner.gnm1.ann1.NJ8Y8Y Arachis hypogaea HOM05D001304 ORTHO05D003803 1.8e-27 125.6 80 76.2
arahy.Tifrunner.gnm1.ann1.U4N2LF Arachis hypogaea HOM05D001304 ORTHO05D003803 1.8e-27 125.6 80 76.2
A06p32460 Brassica napus HOM05D001304 ORTHO05D003803 1.8e-27 125.6 80 78.8
BraA06t26170Z Brassica rapa HOM05D001304 ORTHO05D003803 1.8e-27 125.6 80 78.8
Carub.0006s0902 Capsella rubella HOM05D001304 ORTHO05D003803 1.8e-27 125.6 80 77.5
Lj2C429T16 Lonicera japonica HOM05D001304 ORTHO05D003803 1.8e-27 125.6 80 78.8
vmacro05523 Vaccinium macrocarpon HOM05D001304 ORTHO05D003803 1.8e-27 125.6 80 78.8
Thhalv10003666m.g Eutrema salsugineum HOM05D001304 ORTHO05D003803 2.4e-27 125.2 80 78.8
Lalb_Chr09g0325801 Lupinus albus HOM05D001304 ORTHO05D003803 2.4e-27 125.2 80 78.8
Oeu050982.2 Olea europaea HOM05D001304 ORTHO05D003803 2.4e-27 125.2 80 77.5
Sp2g28710 Schrenkiella parvula HOM05D001304 ORTHO05D003803 2.4e-27 125.2 80 78.8
Thhalv10012826m.g Eutrema salsugineum HOM05D001304 ORTHO05D003803 3.1e-27 124.8 80 78.8
FAN23G1646 Fragaria x ananassa HOM05D001304 ORTHO05D003803 3.1e-27 124.8 80 77.5
Sabra07G0003300 Salix brachista HOM05D001304 ORTHO05D003803 3.1e-27 124.8 80 80.0
THA.LOC104798525 Tarenaya hassleriana HOM05D001304 ORTHO05D003803 3.1e-27 124.8 80 77.5
DCAR_025863 Daucus carota HOM05D001304 ORTHO05D003803 4.1e-27 124.4 80 78.8
MBI16_g33083_MAGBIO Magnolia biondii HOM05D001304 ORTHO05D003803 4.1e-27 124.4 79 78.5
MBI16_g36493_MAGBIO Magnolia biondii HOM05D001304 ORTHO05D003803 4.1e-27 124.4 77 80.5
Rhsim10G0079900 Rhododendron simsii HOM05D001304 ORTHO05D003803 4.1e-27 124.4 80 77.5
Ah.03g134350 Amaranthus hybridus HOM05D001304 ORTHO05D003803 5.3e-27 124.0 80 78.8
AL6G21070 Arabidopsis lyrata HOM05D001304 ORTHO05D003803 5.3e-27 124.0 80 76.2
SEGI_22072 Sequoiadendron giganteum HOM05D001304 ORTHO05D003803 5.3e-27 124.0 81 74.1
Solyc02g091580.4 Solanum lycopersicum HOM05D001304 ORTHO05D003803 5.3e-27 124.0 80 78.8
Lj2g0015774 Lotus japonicus HOM05D001304 ORTHO05D003803 7.0e-27 123.6 80 77.5
Sc12g0003840 Simmondsia chinensis HOM05D001304 ORTHO05D003803 7.0e-27 123.6 79 77.2
TAR625G1042 Trochodendron aralioides HOM05D001304 ORTHO05D003803 7.0e-27 123.6 79 79.7
CsaV3_4G008500 Cucumis sativus L. HOM05D001304 ORTHO05D003803 9.1e-27 123.2 80 73.8
Nn5g29786 Nelumbo nucifera HOM05D001304 ORTHO05D003803 9.1e-27 123.2 80 76.2
TWI77G0616 Tripterygium wilfordii HOM05D001304 ORTHO05D003803 9.1e-27 123.2 79 79.7
MSTRG.23623 Avicennia marina HOM05D001304 ORTHO05D003803 1.2e-26 122.9 80 77.5
BcaB01g05521 Brassica carinata HOM05D001304 ORTHO05D003803 1.2e-26 122.9 80 76.2
BcaC01g02851 Brassica carinata HOM05D001304 ORTHO05D003803 1.2e-26 122.9 80 76.2
C03p05320 Brassica napus HOM05D001304 ORTHO05D003803 1.2e-26 122.9 80 76.2
C03p60130 Brassica napus HOM05D001304 ORTHO05D003803 1.2e-26 122.9 80 77.5
BolC3t13045H Brassica oleracea HOM05D001304 ORTHO05D003803 1.2e-26 122.9 80 76.2
BolC3t18277H Brassica oleracea HOM05D001304 ORTHO05D003803 1.2e-26 122.9 80 77.5
Migut.H00290 Erythranthe guttata HOM05D001304 ORTHO05D003803 1.2e-26 122.9 80 76.2
Os02g0830100 Oryza sativa ssp. japonica HOM05D001304 ORTHO05D003803 1.2e-26 122.9 80 77.5
Potri.007G004600 Populus trichocarpa HOM05D001304 ORTHO05D003803 1.2e-26 122.9 80 78.8
AL8G43210 Arabidopsis lyrata HOM05D001304 ORTHO05D003803 1.6e-26 122.5 80 77.5
Manes.13G103984 Manihot esculenta HOM05D001304 ORTHO05D003803 1.6e-26 122.5 80 77.5
CARHR279570 Cardamine hirsuta HOM05D001304 ORTHO05D003803 2.0e-26 122.1 80 76.2
Sc16g0000720 Simmondsia chinensis HOM05D001304 ORTHO05D003803 2.6e-26 121.7 80 77.5
EL10Ac6g13308 Beta vulgaris HOM05D001304 ORTHO05D003803 3.5e-26 121.3 80 76.2
ClCG07G009830 Citrullus lanatus HOM05D001304 ORTHO05D003803 3.5e-26 121.3 80 73.8
A03p04640 Brassica napus HOM05D001304 ORTHO05D003803 4.5e-26 120.9 80 75.0
BraA03t09805Z Brassica rapa HOM05D001304 ORTHO05D003803 4.5e-26 120.9 80 75.0
QL06p037353 Quercus lobata HOM05D001304 ORTHO05D003803 4.5e-26 120.9 80 75.0
Hund14168 Selenicereus undatus HOM05D001304 ORTHO05D003803 4.5e-26 120.9 80 76.2
unitig_736.g22352 Utricularia gibba HOM05D001304 ORTHO05D003803 4.5e-26 120.9 80 77.5
CARHR202760 Cardamine hirsuta HOM05D001304 ORTHO05D003803 7.7e-26 120.2 80 78.8
Cc00_g02850 Coffea canephora HOM05D001304 ORTHO05D003803 7.7e-26 120.2 80 76.2
Eucgr.I00597 Eucalyptus grandis HOM05D001304 ORTHO05D003803 7.7e-26 120.2 79 74.7
ATR0800G081 Amborella trichopoda HOM05D001304 ORTHO05D003803 1.0e-25 119.8 80 72.5
CDE02G1292 Ceratophyllum demersum HOM05D001304 ORTHO05D003803 1.0e-25 119.8 80 76.2
MELO3C016079.2 Cucumis melo HOM05D001304 ORTHO05D003803 1.0e-25 119.8 80 73.8
HPP92_025840 Vanilla planifolia HOM05D001304 ORTHO05D003803 1.0e-25 119.8 80 71.2
Atru.chr3.1158 Acer truncatum HOM05D001304 ORTHO05D003803 1.3e-25 119.4 79 78.5
Atru.chr3.1174 Acer truncatum HOM05D001304 ORTHO05D003803 1.3e-25 119.4 79 78.5
arahy.Tifrunner.gnm1.ann1.Y7B72I Arachis hypogaea HOM05D001304 ORTHO05D003803 2.2e-25 118.6 96 67.7
CSS0040295 Camellia sinensis var. sinensis HOM05D001304 ORTHO05D003803 2.9e-25 118.2 79 73.4
Sed0016167 Sechium edule HOM05D001304 ORTHO05D003803 2.9e-25 118.2 80 71.2
CAN.G1061.35 Capsicum annuum HOM05D001304 ORTHO05D003803 5.0e-25 117.5 80 71.2
Actinidia24167 Actinidia chinensis HOM05D001304 ORTHO05D003803 6.5e-25 117.1 79 73.4
Cfa010111 Carpinus fangiana HOM05D001304 ORTHO05D003803 6.5e-25 117.1 79 73.4
BcaC01g03325 Brassica carinata HOM05D001304 ORTHO05D018604 8.5e-25 116.7 78 74.4
C03p53640 Brassica napus HOM05D001304 ORTHO05D018604 8.5e-25 116.7 78 74.4
BolC3t17624H Brassica oleracea HOM05D001304 ORTHO05D018604 8.5e-25 116.7 78 74.4
DCAR_010514 Daucus carota HOM05D001304 ORTHO05D003803 1.1e-24 116.3 80 76.2
DCAR_021620 Daucus carota HOM05D001304 ORTHO05D003803 2.5e-24 115.2 80 76.2
GSVIVG01031425001 Vitis vinifera HOM05D001304 ORTHO05D003803 2.5e-24 115.2 79 70.9
Zm00001eb259450 Zea mays HOM05D001304 ORTHO05D003803 9.4e-24 113.2 78 74.4
AagrBONN_evm.TU.Sc2ySwM_117.3512 Anthoceros agrestis HOM05D001304 ORTHO05D003803 2.1e-23 112.1 80 67.5
Mapoly0137s0031 Marchantia polymorpha HOM05D001304 ORTHO05D003803 3.0e-22 108.2 80 65.0
Oeu026995.1 Olea europaea HOM05D001304 ORTHO05D003803 6.7e-22 107.1 79 64.6
QL01p014133 Quercus lobata HOM05D001304 ORTHO05D003803 8.8e-22 106.7 78 70.5
SMO353G0212 Selaginella moellendorffii HOM05D001304 ORTHO05D003803 3.3e-21 104.8 80 67.5
SalBow3G1603 Salvia bowleyana HOM05D001304 ORTHO05D003803 1.7e-20 102.4 79 62.0
CBR_g51495 Chara braunii HOM05D001304 ORTHO05D003803 2.8e-20 101.7 80 65.0
Cre13.g572900 Chlamydomonas reinhardtii HOM05D001304 ORTHO05D003803 1.1e-19 99.8 78 64.1
RcHm_v2.0_Chr7g0233391 Rosa chinensis HOM05D001304 ORTHO05D003803 7.7e-18 93.6 76 60.5
PRCOL_00007257 Prasinoderma coloniale HOM05D001304 ORTHO05D003803 8.5e-17 90.1 80 53.8
SMO347G0350 Selaginella moellendorffii HOM05D001304 ORTHO05D003803 1.9e-16 89.0 79 58.2
QL11p013027 Quercus lobata HOM05D001304 ORTHO05D003803 2.5e-16 88.6 74 59.5
Gohir.D03G094850 Gossypium hirsutum HOM05D001304 ORTHO05D018604 1.2e-15 86.3 55 72.7
Gorai.003G099000 Gossypium raimondii HOM05D001304 ORTHO05D018604 1.2e-15 86.3 55 74.5
Gohir.A03G068250 Gossypium hirsutum HOM05D001304 ORTHO05D018604 2.1e-15 85.5 56 73.2
MCO02G036 Micromonas commoda HOM05D001304 ORTHO05D003803 6.1e-15 84.0 95 49.5
SMO274G0011 Selaginella moellendorffii HOM05D001304 ORTHO05D003803 4.0e-14 81.3 79 54.4
SMO134G0101 Selaginella moellendorffii HOM05D001304 ORTHO05D003803 7.5e-13 77.0 78 52.6
SMO134G0121 Selaginella moellendorffii HOM05D001304 ORTHO05D003803 1.1e-11 73.2 79 51.9
Dinv29403 Davidia involucrata HOM05D001304 ORTHO05D003803 1.3e-09 66.2 79 49.4
CDE04G3591 Ceratophyllum demersum HOM05D001304 ORTHO05D003803 2.5e-08 62.0 38 84.2


User provided reference genes

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