Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0467021 Helianthus annuus HOM05D000319 ORTHO05D005616 9.3e-147 523.5 255 100.0
Lsat_1_v5_gn_9_8201 Lactuca sativa HOM05D000319 ORTHO05D005616 1.3e-140 503.1 255 94.9
ECA247G3951 Erigeron canadensis HOM05D000319 ORTHO05D005616 1.8e-137 492.7 256 94.9
GSVIVG01000718001 Vitis vinifera HOM05D000319 ORTHO05D005616 4.5e-133 478.0 255 89.0
CSS0020063 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 1.3e-132 476.5 255 88.6
TWI18G1113 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 4.9e-132 474.6 255 89.0
Actinidia19981 Actinidia chinensis HOM05D000319 ORTHO05D005616 8.4e-132 473.8 255 88.6
Rhsim13G0030900 Rhododendron simsii HOM05D000319 ORTHO05D005616 3.2e-131 471.9 255 88.6
THA.LOC104825981 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 3.2e-131 471.9 256 89.5
Dinv34565 Davidia involucrata HOM05D000319 ORTHO05D005616 4.2e-131 471.5 255 87.8
MSTRG.18283 Avicennia marina HOM05D000319 ORTHO05D005616 5.5e-131 471.1 255 88.2
Duzib211G0655 Durio zibethinus HOM05D000319 ORTHO05D005616 9.3e-131 470.3 255 88.6
Gohir.D08G055800 Gossypium hirsutum HOM05D000319 ORTHO05D005616 9.3e-131 470.3 255 88.6
Ah.11g049990 Amaranthus hybridus HOM05D000319 ORTHO05D005616 1.2e-130 469.9 255 88.2
Nn1g02549 Nelumbo nucifera HOM05D000319 ORTHO05D005616 1.2e-130 469.9 253 89.3
Manes.01G201800 Manihot esculenta HOM05D000319 ORTHO05D005616 1.6e-130 469.5 255 89.0
Gohir.A08G045400 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.1e-130 469.2 255 88.2
Thecc.01G267900 Theobroma cacao HOM05D000319 ORTHO05D005616 2.1e-130 469.2 255 89.0
SGA_v2.0_scaffold1G00552 Striga asiatica HOM05D000319 ORTHO05D005616 2.7e-130 468.8 255 88.2
Manes.14G005900 Manihot esculenta HOM05D000319 ORTHO05D005616 3.5e-130 468.4 255 88.6
Atru.chr5.1559 Acer truncatum HOM05D000319 ORTHO05D005616 4.6e-130 468.0 255 89.8
Eucgr.K03315 Eucalyptus grandis HOM05D000319 ORTHO05D005616 4.6e-130 468.0 255 89.0
THA.LOC104801256 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 6.0e-130 467.6 257 88.7
Thhalv10028900m.g Eutrema salsugineum HOM05D000319 ORTHO05D005616 7.9e-130 467.2 256 88.7
Migut.D00371 Erythranthe guttata HOM05D000319 ORTHO05D005616 1.0e-129 466.8 255 87.8
Gorai.004G056700 Gossypium raimondii HOM05D000319 ORTHO05D005616 1.0e-129 466.8 255 87.5
TAR365G0186 Trochodendron aralioides HOM05D000319 ORTHO05D005616 1.0e-129 466.8 253 90.5
COL.COLO4_06081 Corchorus olitorius HOM05D000319 ORTHO05D005616 1.3e-129 466.5 255 88.6
PGR044G1796 Punica granatum HOM05D000319 ORTHO05D005616 1.3e-129 466.5 256 88.3
Carub.0006s3456 Capsella rubella HOM05D000319 ORTHO05D005616 1.8e-129 466.1 256 88.3
Sc17g0001020 Simmondsia chinensis HOM05D000319 ORTHO05D005616 1.8e-129 466.1 255 87.8
Actinidia09093 Actinidia chinensis HOM05D000319 ORTHO05D005616 3.0e-129 465.3 255 87.5
Cfa008743 Carpinus fangiana HOM05D000319 ORTHO05D005616 3.0e-129 465.3 255 88.2
Lj2A1160T39 Lonicera japonica HOM05D000319 ORTHO05D005616 3.0e-129 465.3 255 87.8
Haze_11759 Corylus avellana HOM05D000319 ORTHO05D005616 3.9e-129 464.9 255 88.2
AL6G50470 Arabidopsis lyrata HOM05D000319 ORTHO05D005616 5.1e-129 464.5 256 88.3
CARHR250870 Cardamine hirsuta HOM05D000319 ORTHO05D005616 5.1e-129 464.5 256 88.3
Cpa.g.sc52.96 Carica papaya HOM05D000319 ORTHO05D005616 8.7e-129 463.8 255 87.1
BcaB01g02475 Brassica carinata HOM05D000319 ORTHO05D005616 1.1e-128 463.4 256 87.5
Potri.005G218000 Populus trichocarpa HOM05D000319 ORTHO05D005616 1.1e-128 463.4 255 87.1
A09p02000 Brassica napus HOM05D000319 ORTHO05D000903 1.5e-128 463.0 253 88.5
MD17G1215900 Malus domestica HOM05D000319 ORTHO05D005616 1.5e-128 463.0 255 88.6
Cc01_g18870 Coffea canephora HOM05D000319 ORTHO05D005616 1.9e-128 462.6 255 87.1
Hma1.2p1_0760F.1_g214240 Hydrangea macrophylla HOM05D000319 ORTHO05D005616 1.9e-128 462.6 256 85.9
Duzib138G1611 Durio zibethinus HOM05D000319 ORTHO05D005616 2.5e-128 462.2 255 87.8
Potri.002G045200 Populus trichocarpa HOM05D000319 ORTHO05D005616 2.5e-128 462.2 255 85.9
Sp6g02490 Schrenkiella parvula HOM05D000319 ORTHO05D005616 2.5e-128 462.2 256 87.1
TWI75G0800 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 3.3e-128 461.8 255 86.7
Prupe.3G092100 Prunus persica HOM05D000319 ORTHO05D005616 4.3e-128 461.5 255 87.8
BcaB01g02030 Brassica carinata HOM05D000319 ORTHO05D005616 5.6e-128 461.1 253 88.1
FvH4_6g29310 Fragaria vesca HOM05D000319 ORTHO05D005616 5.6e-128 461.1 255 88.2
AUR62032260 Chenopodium quinoa HOM05D000319 ORTHO05D005616 7.4e-128 460.7 255 86.7
BcaC04g23998 Brassica carinata HOM05D000319 ORTHO05D000903 1.6e-127 459.5 253 87.7
C09p02100 Brassica napus HOM05D000319 ORTHO05D000903 1.6e-127 459.5 253 87.7
CANSAT56G1819 Cannabis sativa HOM05D000319 ORTHO05D005616 1.6e-127 459.5 255 87.5
Ciclev10021811m.g Citrus clementina HOM05D000319 ORTHO05D005616 1.6e-127 459.5 255 86.3
RcHm_v2.0_Chr2g0134501 Rosa chinensis HOM05D000319 ORTHO05D005616 1.6e-127 459.5 255 87.5
SalBow4G3161 Salvia bowleyana HOM05D000319 ORTHO05D005616 1.6e-127 459.5 255 87.5
AT4G02580 Arabidopsis thaliana HOM05D000319 ORTHO05D005616 2.1e-127 459.1 256 87.5
EL10Ac5g10471 Beta vulgaris HOM05D000319 ORTHO05D005616 2.1e-127 459.1 255 85.9
A03p30990 Brassica napus HOM05D000319 ORTHO05D000903 2.8e-127 458.8 253 87.4
BolC9t53140H Brassica oleracea HOM05D000319 ORTHO05D005616 2.8e-127 458.8 256 87.1
AUR62011945 Chenopodium quinoa HOM05D000319 ORTHO05D005616 6.2e-127 457.6 255 86.3
arahy.Tifrunner.gnm1.ann1.69SMRU Arachis hypogaea HOM05D000319 ORTHO05D005616 8.2e-127 457.2 255 86.7
ClCG07G012250 Citrullus lanatus HOM05D000319 ORTHO05D005616 8.2e-127 457.2 255 86.7
Aa31LG5G2210 Aethionema arabicum HOM05D000319 ORTHO05D005616 1.1e-126 456.8 256 86.7
BraA09t35850Z Brassica rapa HOM05D000319 ORTHO05D000903 1.1e-126 456.8 253 87.7
CiPaw.06G060900 Carya illinoinensis HOM05D000319 ORTHO05D005616 1.1e-126 456.8 255 86.7
Lj3g0018932 Lotus japonicus HOM05D000319 ORTHO05D005616 1.1e-126 456.8 255 85.5
MD17G1216000 Malus domestica HOM05D000319 ORTHO05D005616 1.1e-126 456.8 255 87.1
Sed0023498 Sechium edule HOM05D000319 ORTHO05D005616 1.8e-126 456.1 255 86.7
Ca_01047_v3 Cicer arietinum L. HOM05D000319 ORTHO05D005616 2.4e-126 455.7 255 85.5
TPR.G37240 Trifolium pratense HOM05D000319 ORTHO05D005616 4.0e-126 454.9 255 85.5
PSO210G0711 Papaver somniferum HOM05D000319 ORTHO05D005616 5.3e-126 454.5 256 85.9
PSO832G0193 Papaver somniferum HOM05D000319 ORTHO05D005616 5.3e-126 454.5 256 85.9
MELO3C017843.2 Cucumis melo HOM05D000319 ORTHO05D005616 1.2e-125 453.4 255 85.9
Aqoxy5G00356 Aquilegia oxysepala HOM05D000319 ORTHO05D005616 1.5e-125 453.0 253 86.6
DCAR_018446 Daucus carota HOM05D000319 ORTHO05D005616 1.5e-125 453.0 255 85.5
CAN.G1072.4 Capsicum annuum HOM05D000319 ORTHO05D005616 2.0e-125 452.6 254 83.9
CsaV3_4G001900 Cucumis sativus L. HOM05D000319 ORTHO05D005616 2.0e-125 452.6 255 85.5
BraA03t12276Z Brassica rapa HOM05D000319 ORTHO05D000903 2.6e-125 452.2 253 87.0
Medtr2g104110 Medicago truncatula HOM05D000319 ORTHO05D005616 2.6e-125 452.2 255 85.1
FAN14G4091 Fragaria x ananassa HOM05D000319 ORTHO05D005616 3.4e-125 451.8 262 85.5
Lalb_Chr22g0350801 Lupinus albus HOM05D000319 ORTHO05D005616 5.8e-125 451.1 255 86.7
Nitab4.5_0003053g0020 Nicotiana tabacum HOM05D000319 ORTHO05D005616 5.8e-125 451.1 254 84.3
Nitab4.5_0000187g0170 Nicotiana tabacum HOM05D000319 ORTHO05D005616 1.0e-124 450.3 254 83.9
BolC3t16066H Brassica oleracea HOM05D000319 ORTHO05D005616 1.7e-124 449.5 255 85.9
CiPaw.05G169400 Carya illinoinensis HOM05D000319 ORTHO05D005616 1.7e-124 449.5 255 85.9
Glyma.15G006400 Glycine max HOM05D000319 ORTHO05D005616 2.9e-124 448.7 255 84.3
Nn3g19503 Nelumbo nucifera HOM05D000319 ORTHO05D005616 2.9e-124 448.7 254 84.6
Glyma.13G367000 Glycine max HOM05D000319 ORTHO05D005616 3.8e-124 448.4 255 83.9
Phvul.005G179400 Phaseolus vulgaris HOM05D000319 ORTHO05D005616 2.5e-123 445.7 255 82.7
Gorai.001G242600 Gossypium raimondii HOM05D000319 ORTHO05D005616 3.2e-123 445.3 255 84.3
Hund09567 Selenicereus undatus HOM05D000319 ORTHO05D005616 3.2e-123 445.3 255 83.1
BcaC01g06747 Brassica carinata HOM05D000319 ORTHO05D000903 4.2e-123 444.9 252 85.7
C03p37760 Brassica napus HOM05D000319 ORTHO05D005616 4.2e-123 444.9 252 85.7
Sopen09g027620 Solanum pennellii HOM05D000319 ORTHO05D005616 4.2e-123 444.9 253 83.8
Sabra02G0036300 Salix brachista HOM05D000319 ORTHO05D005616 1.2e-122 443.4 306 72.5
Gohir.A07G208700 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.1e-122 442.6 255 83.9
PGSC0003DMG400019303 Solanum tuberosum HOM05D000319 ORTHO05D005616 3.5e-122 441.8 253 82.6
unitig_26.g10148 Utricularia gibba HOM05D000319 ORTHO05D005616 4.6e-122 441.4 255 83.9
CDE06G1797 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 1.0e-121 440.3 257 81.7
CDE07G0560 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 1.5e-120 436.4 257 80.5
Gohir.D07G214600 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.5e-120 436.4 255 82.7
Sed0021269 Sechium edule HOM05D000319 ORTHO05D005616 5.7e-120 434.5 255 84.3
Psat5g303080 Pisum sativum HOM05D000319 ORTHO05D005616 3.1e-118 428.7 255 82.0
Os05g0509200 Oryza sativa ssp. japonica HOM05D000319 ORTHO05D005616 5.3e-118 427.9 250 80.0
Zm00001eb292370 Zea mays HOM05D000319 ORTHO05D005616 6.9e-118 427.6 238 83.2
ATR0665G648 Amborella trichopoda HOM05D000319 ORTHO05D005616 2.0e-117 426.0 257 79.8
FAN09G4049 Fragaria x ananassa HOM05D000319 ORTHO05D005616 2.6e-117 425.6 240 87.1
SGA_v2.0_scaffold138G35283 Striga asiatica HOM05D000319 ORTHO05D005616 3.4e-117 425.2 294 74.8
HanXRQChr01g0006871 Helianthus annuus HOM05D000319 ORTHO05D005616 1.3e-116 423.3 267 79.0
vmacro02626 Vaccinium macrocarpon HOM05D000319 ORTHO05D005616 1.4e-115 419.9 283 74.2
VMungo1080G0987 Vigna mungo HOM05D000319 ORTHO05D005616 3.9e-113 411.8 240 83.3
SMO361G0598 Selaginella moellendorffii HOM05D000319 ORTHO05D005616 2.6e-109 399.1 235 79.6
Dinv22483 Davidia involucrata HOM05D000319 ORTHO05D005616 5.0e-108 394.8 219 85.8
AagrBONN_evm.TU.Sc2ySwM_368.222 Anthoceros agrestis HOM05D000319 ORTHO05D005616 2.1e-106 389.4 229 78.6
Mapoly0103s0061 Marchantia polymorpha HOM05D000319 ORTHO05D005616 1.4e-105 386.7 253 71.9
arahy.Tifrunner.gnm1.ann1.0F4L5T Arachis hypogaea HOM05D000319 ORTHO05D005616 6.7e-105 384.4 255 76.5
Pp3c14_11220 Physcomitrium patens HOM05D000319 ORTHO05D005616 2.6e-104 382.5 243 74.1
MBI11_g38515_MAGBIO Magnolia biondii HOM05D000319 ORTHO05D005616 1.7e-103 379.8 260 73.1
Pp3c2_9810 Physcomitrium patens HOM05D000319 ORTHO05D005616 8.2e-103 377.5 250 71.6
Pp3c2_9813 Physcomitrium patens HOM05D000319 ORTHO05D005616 1.1e-102 377.1 247 72.1
SEGI_22234 Sequoiadendron giganteum HOM05D000319 ORTHO05D005616 1.2e-101 373.6 200 87.0
Sabra05G0167100 Salix brachista HOM05D000319 ORTHO05D005616 3.8e-100 368.6 319 61.4
HPP92_010274 Vanilla planifolia HOM05D000319 ORTHO05D005616 5.0e-100 368.2 260 71.5
CBR_g10938 Chara braunii HOM05D000319 ORTHO05D005616 1.2e-98 363.6 240 72.5
Duzib133G0192 Durio zibethinus HOM05D000319 ORTHO05D005616 2.7e-98 362.5 255 72.2
HPP92_010249 Vanilla planifolia HOM05D000319 ORTHO05D005616 2.3e-97 359.4 260 71.2
CBR_g36360 Chara braunii HOM05D000319 ORTHO05D005616 3.9e-97 358.6 240 71.2
FAN02G2104 Fragaria x ananassa HOM05D000319 ORTHO05D005616 3.9e-97 358.6 240 77.1
BolC2t09938H Brassica oleracea HOM05D000319 ORTHO05D005616 2.7e-90 335.9 250 69.6
Oeu058799.1 Olea europaea HOM05D000319 ORTHO05D005616 1.7e-84 316.6 161 93.2
QL03p046056 Quercus lobata HOM05D000319 ORTHO05D005616 2.7e-82 309.3 160 91.2
Solyc09g065830.4 Solanum lycopersicum HOM05D000319 ORTHO05D005616 2.7e-82 309.3 162 88.3
PRCOL_00000415 Prasinoderma coloniale HOM05D000319 ORTHO05D005616 1.8e-81 306.6 248 59.3
BcaB05g23646 Brassica carinata HOM05D000319 ORTHO05D005616 1.5e-80 303.5 285 60.7
BcaC03g16149 Brassica carinata HOM05D000319 ORTHO05D005616 7.0e-78 294.7 201 72.1
Lalb_Chr24g0395411 Lupinus albus HOM05D000319 ORTHO05D005616 2.8e-74 282.7 171 81.9
HPP92_010181 Vanilla planifolia HOM05D000319 ORTHO05D005616 2.8e-74 282.7 152 90.1
SGA_v2.0_scaffold580G53039 Striga asiatica HOM05D000319 ORTHO05D005616 4.7e-74 282.0 162 85.8
Cre10.g450400 Chlamydomonas reinhardtii HOM05D000319 ORTHO05D005616 2.6e-72 276.2 242 52.9
FAN05G4646 Fragaria x ananassa HOM05D000319 ORTHO05D005616 1.5e-67 260.4 268 56.7
C02p39270 Brassica napus HOM05D000319 ORTHO05D021913 5.0e-60 235.3 135 81.5
Carub.0006s0058 Capsella rubella HOM05D000319 ORTHO05D005616 5.2e-57 225.3 116 94.0
CAN.G2529.1 Capsicum annuum HOM05D000319 ORTHO05D005616 2.6e-56 223.0 117 90.6
Cfa025181 Carpinus fangiana HOM05D000319 ORTHO05D005616 2.6e-48 196.4 229 42.4
Lj1A57T50 Lonicera japonica HOM05D000319 ORTHO05D005616 1.3e-47 194.1 121 77.7
Peaxi162Scf00049g02221 Petunia axillaris HOM05D000319 ORTHO05D005616 3.7e-47 192.6 101 93.1
Oeu002275.1 Olea europaea HOM05D000319 ORTHO05D005616 7.1e-46 188.3 165 61.8
CSS0010087 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 6.6e-44 181.8 100 88.0
Haze_26296 Corylus avellana HOM05D000319 ORTHO05D005616 2.5e-43 179.9 211 46.4
Lalb_Chr24g0395401 Lupinus albus HOM05D000319 ORTHO05D005616 1.4e-38 164.1 84 88.1
Psat5g267520 Pisum sativum HOM05D000319 ORTHO05D005616 7.1e-38 161.8 83 85.5
Gohir.D03G127200 Gossypium hirsutum HOM05D000319 ORTHO05D005616 7.8e-37 158.3 89 83.1
Oeu058801.1 Olea europaea HOM05D000113 ORTHO05D010194 3.0e-36 156.4 100 74.0
Gorai.007G009700 Gossypium raimondii HOM05D000319 ORTHO05D005616 5.1e-36 155.6 83 86.7
Gohir.D08G101900 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.6e-34 150.6 89 79.8
Gorai.004G109900 Gossypium raimondii HOM05D000319 ORTHO05D005616 3.6e-34 149.4 89 78.7
Gohir.D11G034350 Gossypium hirsutum HOM05D000319 ORTHO05D015684 5.3e-33 145.6 75 88.0
Gorai.011G177500 Gossypium raimondii HOM05D000319 ORTHO05D015684 5.3e-33 145.6 89 77.5
QL03p046047 Quercus lobata HOM05D000319 ORTHO05D005616 2.2e-31 140.2 97 73.2
Gorai.007G037200 Gossypium raimondii HOM05D000319 ORTHO05D015684 3.8e-31 139.4 81 81.5
Gohir.D02G148240 Gossypium hirsutum HOM05D000319 ORTHO05D015684 6.4e-31 138.7 81 81.5
Gohir.A10G159900 Gossypium hirsutum HOM05D000319 ORTHO05D015684 2.1e-29 133.7 75 82.7
Gohir.A12G213400 Gossypium hirsutum HOM05D000319 ORTHO05D015684 2.1e-29 133.7 75 82.7
Gohir.D05G290500 Gossypium hirsutum HOM05D000319 ORTHO05D015684 2.1e-29 133.7 75 82.7
Gohir.D12G241200 Gossypium hirsutum HOM05D000319 ORTHO05D015684 2.1e-29 133.7 75 82.7
Gorai.008G258400 Gossypium raimondii HOM05D000319 ORTHO05D015684 2.7e-29 133.3 81 77.8
Gohir.A02G064600 Gossypium hirsutum HOM05D000319 ORTHO05D015684 7.9e-29 131.7 75 81.3
Psat2g121280 Pisum sativum HOM05D000319 ORTHO05D005616 7.9e-29 131.7 84 78.6
Gorai.005G095000 Gossypium raimondii HOM05D000319 ORTHO05D015684 2.5e-27 126.7 75 78.7
Gohir.D03G105033 Gossypium hirsutum HOM05D000319 ORTHO05D005616 4.8e-26 122.5 71 80.3
Gorai.003G111100 Gossypium raimondii HOM05D000319 ORTHO05D015684 4.8e-26 122.5 76 77.6
Psat4g011320 Pisum sativum HOM05D000319 ORTHO05D005616 8.1e-26 121.7 82 76.8
GSVIVG01013142001 Vitis vinifera HOM05D000319 ORTHO05D439463 1.9e-11 73.9 55 63.6
Lj1A57T51 Lonicera japonica HOM05D000319 ORTHO05D005616 3.3e-11 73.2 41 82.9
arahy.Tifrunner.gnm1.ann1.52VWXA Arachis hypogaea HOM05D000069 ORTHO05D086405 2.5e-06 57.0 29 93.1


User provided reference genes

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