Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0464841 Helianthus annuus HOM05D003492 ORTHO05D005115 4.5e-25 117.1 57 100.0
MBI15_g19421_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 2.1e-14 81.6 53 67.9
HanXRQChr14g0459601 Helianthus annuus HOM05D003492 ORTHO05D005115 2.3e-13 78.2 72 59.7
TAR623G0495 Trochodendron aralioides HOM05D003492 ORTHO05D005115 2.5e-12 74.7 73 57.5
Cc02_g06280 Coffea canephora HOM05D003492 ORTHO05D005115 1.7e-11 72.0 72 55.6
DCAR_011823 Daucus carota HOM05D003492 ORTHO05D005115 2.2e-11 71.6 77 51.9
GSVIVG01032797001 Vitis vinifera HOM05D003492 ORTHO05D005115 4.8e-11 70.5 72 55.6
CANSAT56G1673 Cannabis sativa HOM05D003492 ORTHO05D005115 6.3e-11 70.1 72 54.2
QL08p063313 Quercus lobata HOM05D003492 ORTHO05D005115 8.2e-11 69.7 72 52.8
Rhsim09G0177900 Rhododendron simsii HOM05D003492 ORTHO05D005115 8.2e-11 69.7 72 54.2
Solyc06g048460.2 Solanum lycopersicum HOM05D003492 ORTHO05D005115 8.2e-11 69.7 72 52.8
Sopen06g014600 Solanum pennellii HOM05D003492 ORTHO05D005115 8.2e-11 69.7 72 52.8
vmacro10035 Vaccinium macrocarpon HOM05D003492 ORTHO05D005115 8.2e-11 69.7 72 54.2
CSS0013780 Camellia sinensis var. sinensis HOM05D003492 ORTHO05D005115 1.1e-10 69.3 72 52.8
MSTRG.8339 Avicennia marina HOM05D003492 ORTHO05D005115 1.4e-10 68.9 75 50.7
Migut.F01404 Erythranthe guttata HOM05D003492 ORTHO05D005115 1.4e-10 68.9 75 50.7
Lsat_1_v5_gn_2_124500 Lactuca sativa HOM05D003492 ORTHO05D005115 1.4e-10 68.9 72 54.2
Rhsim10G0095300 Rhododendron simsii HOM05D003492 ORTHO05D005115 1.4e-10 68.9 71 54.9
Gohir.A10G240100 Gossypium hirsutum HOM05D003492 ORTHO05D005115 1.8e-10 68.6 75 52.0
Gohir.D10G252000 Gossypium hirsutum HOM05D003492 ORTHO05D005115 1.8e-10 68.6 75 52.0
Gorai.011G292500 Gossypium raimondii HOM05D003492 ORTHO05D005115 1.8e-10 68.6 75 52.0
Thecc.10G014500 Theobroma cacao HOM05D003492 ORTHO05D005115 1.8e-10 68.6 70 54.3
Dinv10611 Davidia involucrata HOM05D003492 ORTHO05D005115 3.1e-10 67.8 72 52.8
Duzib106G0351 Durio zibethinus HOM05D003492 ORTHO05D005115 3.1e-10 67.8 70 54.3
TWI09G0940 Tripterygium wilfordii HOM05D003492 ORTHO05D005115 3.1e-10 67.8 72 52.8
Eucgr.G03070 Eucalyptus grandis HOM05D003492 ORTHO05D005115 4.1e-10 67.4 77 49.4
Nn2g10890 Nelumbo nucifera HOM05D003492 ORTHO05D005115 4.1e-10 67.4 72 51.4
arahy.Tifrunner.gnm1.ann1.J7W2E5 Arachis hypogaea HOM05D003492 ORTHO05D005115 5.3e-10 67.0 72 50.0
arahy.Tifrunner.gnm1.ann1.V2YUX7 Arachis hypogaea HOM05D003492 ORTHO05D005115 5.3e-10 67.0 72 50.0
Manes.07G131200 Manihot esculenta HOM05D003492 ORTHO05D005115 6.9e-10 66.6 72 51.4
Peaxi162Scf00284g00913 Petunia axillaris HOM05D003492 ORTHO05D005115 6.9e-10 66.6 72 50.0
RcHm_v2.0_Chr1g0370461 Rosa chinensis HOM05D003492 ORTHO05D005115 6.9e-10 66.6 70 52.9
LjContig00357g0011776 Lotus japonicus HOM05D003492 ORTHO05D005115 9.1e-10 66.2 72 50.0
CiPaw.01G300000 Carya illinoinensis HOM05D003492 ORTHO05D005115 1.2e-09 65.9 72 50.0
PSO339G2087 Papaver somniferum HOM05D003492 ORTHO05D005115 1.5e-09 65.5 72 48.6
PSO384G0172 Papaver somniferum HOM05D003492 ORTHO05D005115 1.5e-09 65.5 72 48.6
EL10Ac2g04850 Beta vulgaris HOM05D003492 ORTHO05D005115 2.0e-09 65.1 72 48.6
AUR62012268 Chenopodium quinoa HOM05D003492 ORTHO05D005115 2.0e-09 65.1 72 48.6
AUR62022903 Chenopodium quinoa HOM05D003492 ORTHO05D005115 2.0e-09 65.1 72 48.6
ClCG07G004320 Citrullus lanatus HOM05D003492 ORTHO05D005115 2.0e-09 65.1 75 49.3
MELO3C026794.2 Cucumis melo HOM05D003492 ORTHO05D005115 2.0e-09 65.1 75 49.3
CsaV3_5G010260 Cucumis sativus L. HOM05D003492 ORTHO05D005115 2.0e-09 65.1 75 49.3
Potri.008G070300 Populus trichocarpa HOM05D003492 ORTHO05D005115 2.0e-09 65.1 77 48.1
Sabra08G0051700 Salix brachista HOM05D003492 ORTHO05D005115 2.0e-09 65.1 77 48.1
Sed0003450 Sechium edule HOM05D003492 ORTHO05D005115 2.0e-09 65.1 75 49.3
Ca_05974_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 3.4e-09 64.3 70 50.0
FvH4_7g24630 Fragaria vesca HOM05D003492 ORTHO05D005115 3.4e-09 64.3 70 51.4
FAN01G1605 Fragaria x ananassa HOM05D003492 ORTHO05D005115 3.4e-09 64.3 70 51.4
FAN03G1412 Fragaria x ananassa HOM05D003492 ORTHO05D005115 3.4e-09 64.3 70 51.4
FAN06G4945 Fragaria x ananassa HOM05D003492 ORTHO05D005115 3.4e-09 64.3 70 51.4
FAN10G4174 Fragaria x ananassa HOM05D003492 ORTHO05D005115 3.4e-09 64.3 70 51.4
Glyma.02G258100 Glycine max HOM05D003492 ORTHO05D005115 3.4e-09 64.3 77 45.5
Medtr5g082890 Medicago truncatula HOM05D003492 ORTHO05D005115 3.4e-09 64.3 70 50.0
Phvul.008G222900 Phaseolus vulgaris HOM05D003492 ORTHO05D005115 3.4e-09 64.3 77 45.5
VMungo0647G1152 Vigna mungo HOM05D003492 ORTHO05D005115 3.4e-09 64.3 77 45.5
Ah.16g103640 Amaranthus hybridus HOM05D003492 ORTHO05D005115 4.5e-09 63.9 72 47.2
Os05g0354300 Oryza sativa ssp. japonica HOM05D003492 ORTHO05D005115 5.9e-09 63.5 77 45.5
TPR.G38386 Trifolium pratense HOM05D003492 ORTHO05D005115 5.9e-09 63.5 68 48.5
ECA238G3428 Erigeron canadensis HOM05D003492 ORTHO05D005115 7.7e-09 63.2 72 48.6
Glyma.14G058400 Glycine max HOM05D003492 ORTHO05D005115 7.7e-09 63.2 74 47.3
Lalb_Chr04g0250511 Lupinus albus HOM05D003492 ORTHO05D005115 7.7e-09 63.2 70 47.1
Psat2g032000 Pisum sativum HOM05D003492 ORTHO05D005115 7.7e-09 63.2 70 48.6
Zm00001eb286110 Zea mays HOM05D003492 ORTHO05D005115 1.3e-08 62.4 67 49.3
Aqoxy4G02502 Aquilegia oxysepala HOM05D003492 ORTHO05D005115 1.7e-08 62.0 67 47.8
Cpa.g.sc19.161 Carica papaya HOM05D003492 ORTHO05D005115 1.7e-08 62.0 72 47.2
Nitab4.5_0011089g0010 Nicotiana tabacum HOM05D003492 ORTHO05D005115 1.7e-08 62.0 94 40.4
HPP92_012039 Vanilla planifolia HOM05D003492 ORTHO05D005115 1.7e-08 62.0 68 47.1
Sc11g0005130 Simmondsia chinensis HOM05D003492 ORTHO05D005115 2.2e-08 61.6 72 47.2
Oeu049666.1 Olea europaea HOM05D003492 ORTHO05D005115 2.9e-08 61.2 65 50.8
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 6.5e-08 60.1 81 45.7
Mapoly0044s0071 Marchantia polymorpha HOM05D003492 ORTHO05D005115 8.5e-08 59.7 70 47.1
Hund15919 Selenicereus undatus HOM05D003492 ORTHO05D005115 8.5e-08 59.7 72 45.8
ATR0681G383 Amborella trichopoda HOM05D003492 ORTHO05D005115 2.5e-07 58.2 68 45.6
Ciclev10030498m.g Citrus clementina HOM05D003492 ORTHO05D005115 2.5e-07 58.2 72 48.6
SGA_v2.0_scaffold365G49997 Striga asiatica HOM05D003492 ORTHO05D005115 4.2e-07 57.4 96 37.5
SHI03328 Sapria himalayana HOM05D003492 ORTHO05D005115 9.4e-07 56.2 74 44.6
AagrBONN_evm.TU.Sc2ySwM_344.5492 Anthoceros agrestis HOM05D003492 ORTHO05D005115 2.7e-06 54.7 70 45.7
Cfa001305 Carpinus fangiana HOM05D003492 ORTHO05D005115 4.7e-06 53.9 73 43.8
Aa31LG11G6620 Aethionema arabicum HOM05D003492 ORTHO05D005115 7.9e-06 53.1 72 40.3
AL6G15450 Arabidopsis lyrata HOM05D003492 ORTHO05D005115 7.9e-06 53.1 72 40.3
AT5G05560 Arabidopsis thaliana HOM05D003492 ORTHO05D005115 7.9e-06 53.1 72 40.3
BcaB01g05759 Brassica carinata HOM05D003492 ORTHO05D005115 7.9e-06 53.1 72 40.3
BcaB01g05953 Brassica carinata HOM05D003492 ORTHO05D005115 7.9e-06 53.1 72 40.3
BcaB05g21711 Brassica carinata HOM05D003492 ORTHO05D005115 7.9e-06 53.1 72 40.3
A03p02330 Brassica napus HOM05D003492 ORTHO05D005115 7.9e-06 53.1 72 40.3
C02p02390 Brassica napus HOM05D003492 ORTHO05D005115 7.9e-06 53.1 72 40.3
C03p02660 Brassica napus HOM05D003492 ORTHO05D005115 7.9e-06 53.1 72 40.3
BolC2t06204H Brassica oleracea HOM05D003492 ORTHO05D005115 7.9e-06 53.1 72 40.3
BolC3t12820H Brassica oleracea HOM05D003492 ORTHO05D005115 7.9e-06 53.1 72 40.3
BraA02t04853Z Brassica rapa HOM05D003492 ORTHO05D005115 7.9e-06 53.1 72 40.3
BraA03t09597Z Brassica rapa HOM05D003492 ORTHO05D005115 7.9e-06 53.1 72 40.3
Carub.0006s0446 Capsella rubella HOM05D003492 ORTHO05D005115 7.9e-06 53.1 72 40.3
CBR_g22845 Chara braunii HOM05D003492 ORTHO05D005115 7.9e-06 53.1 70 44.3
Sp6g37310 Schrenkiella parvula HOM05D003492 ORTHO05D005115 7.9e-06 53.1 72 40.3


User provided reference genes

Program Settings