Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0459541 Helianthus annuus HOM05D004762 ORTHO05D005972 8.2e-307 1056.2 525 100.0
ECA238G4598 Erigeron canadensis HOM05D001399 ORTHO05D001670 1.6e-222 776.2 426 89.7
Lsat_1_v5_gn_2_124101 Lactuca sativa HOM05D004762 ORTHO05D005972 8.1e-214 747.3 461 80.3
CSS0039953 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 2.8e-206 722.2 462 75.3
CSS0044129 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 2.8e-206 722.2 462 75.3
Rhsim03G0145100 Rhododendron simsii HOM05D004762 ORTHO05D005972 8.1e-206 720.7 459 74.7
QL06p052059 Quercus lobata HOM05D004762 ORTHO05D005972 6.9e-205 717.6 453 76.4
PGSC0003DMG400019183 Solanum tuberosum HOM05D004762 ORTHO05D005972 1.7e-203 713.0 457 74.4
Peaxi162Scf00284g00722 Petunia axillaris HOM05D004762 ORTHO05D005972 8.4e-203 710.7 457 73.7
CANSAT56G2662 Cannabis sativa HOM05D004762 ORTHO05D005972 1.1e-202 710.3 452 75.9
Solyc10g076800.2 Solanum lycopersicum HOM05D004762 ORTHO05D005972 3.2e-202 708.8 457 74.0
TAR636G3670 Trochodendron aralioides HOM05D004762 ORTHO05D005972 5.5e-202 708.0 450 75.6
Ciclev10031450m.g Citrus clementina HOM05D004762 ORTHO05D005972 9.3e-202 707.2 464 74.1
Psat4g160680 Pisum sativum HOM05D004762 ORTHO05D005972 3.5e-201 705.3 461 74.0
SalBow6G6782 Salvia bowleyana HOM05D004762 ORTHO05D005972 6.0e-201 704.5 462 74.0
Hma1.2p1_0145F.1_g065350 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 1.3e-200 703.4 453 74.6
Atru.BG.273.p Acer truncatum HOM05D004762 ORTHO05D005972 2.3e-200 702.6 424 79.7
GSVIVG01032791001 Vitis vinifera HOM05D004762 ORTHO05D005972 3.0e-200 702.2 453 75.3
CAN.G1087.1 Capsicum annuum HOM05D004762 ORTHO05D005972 3.9e-200 701.8 462 72.3
Medtr8g027750 Medicago truncatula HOM05D004762 ORTHO05D005972 3.9e-200 701.8 461 75.1
CiPaw.01G300200 Carya illinoinensis HOM05D004762 ORTHO05D005972 6.7e-200 701.0 449 74.8
Nitab4.5_0000797g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.1e-199 700.3 454 73.3
CAN.G1305.22 Capsicum annuum HOM05D004762 ORTHO05D005972 1.5e-199 699.9 462 71.9
Cfa001301 Carpinus fangiana HOM05D004762 ORTHO05D005972 1.5e-199 699.9 450 74.9
Nitab4.5_0013304g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 2.5e-199 699.1 459 73.0
EL10Ac2g04854 Beta vulgaris HOM05D004762 ORTHO05D005972 4.3e-199 698.4 453 73.7
Eucgr.G03076 Eucalyptus grandis HOM05D004762 ORTHO05D005972 4.3e-199 698.4 462 73.8
Manes.07G131500 Manihot esculenta HOM05D004762 ORTHO05D005972 4.3e-199 698.4 450 74.9
TWI09G1175 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 9.6e-199 697.2 466 73.0
Duzib106G1587 Durio zibethinus HOM05D004762 ORTHO05D005972 1.3e-198 696.8 461 74.0
Potri.012G095500 Populus trichocarpa HOM05D004762 ORTHO05D005972 2.8e-198 695.7 458 73.4
COL.COLO4_25767 Corchorus olitorius HOM05D004762 ORTHO05D005972 6.3e-198 694.5 459 73.6
FvH4_7g24680 Fragaria vesca HOM05D004762 ORTHO05D005972 6.3e-198 694.5 449 73.7
Lj8A64T49 Lonicera japonica HOM05D004762 ORTHO05D005972 6.3e-198 694.5 450 75.1
TWI53G2041 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 6.3e-198 694.5 459 73.9
Gorai.013G017200 Gossypium raimondii HOM05D004762 ORTHO05D005972 8.2e-198 694.1 454 74.9
Migut.F00664 Erythranthe guttata HOM05D004762 ORTHO05D005972 1.1e-197 693.7 451 74.1
RcHm_v2.0_Chr1g0370541 Rosa chinensis HOM05D004762 ORTHO05D005972 1.1e-197 693.7 449 74.4
Lj3g0010190 Lotus japonicus HOM05D004762 ORTHO05D005972 1.8e-197 693.0 434 77.2
MD07G1223900 Malus domestica HOM05D004762 ORTHO05D005972 3.1e-197 692.2 449 74.6
vmacro06958 Vaccinium macrocarpon HOM05D004762 ORTHO05D005972 3.1e-197 692.2 491 69.2
Thecc.10G014000 Theobroma cacao HOM05D004762 ORTHO05D005972 9.0e-197 690.6 461 74.2
Lalb_Chr04g0254441 Lupinus albus HOM05D004762 ORTHO05D005972 1.5e-196 689.9 450 74.2
AT2G40190 Arabidopsis thaliana HOM05D004762 ORTHO05D005972 2.0e-196 689.5 448 73.4
Ca_23540_v3 Cicer arietinum L. HOM05D004762 ORTHO05D005972 2.0e-196 689.5 484 71.3
arahy.Tifrunner.gnm1.ann1.BGVI4S Arachis hypogaea HOM05D004762 ORTHO05D005972 3.4e-196 688.7 450 74.2
BcaB02g09041 Brassica carinata HOM05D004762 ORTHO05D005972 4.5e-196 688.3 431 75.4
Sp4g22540 Schrenkiella parvula HOM05D004762 ORTHO05D005972 4.5e-196 688.3 448 73.2
COL.COLO4_23625 Corchorus olitorius HOM05D004762 ORTHO05D005972 5.9e-196 688.0 461 73.8
Thhalv10016619m.g Eutrema salsugineum HOM05D004762 ORTHO05D005972 5.9e-196 688.0 457 73.3
A05p06240 Brassica napus HOM05D004762 ORTHO05D005972 1.0e-195 687.2 447 73.4
Haze_17244 Corylus avellana HOM05D004762 ORTHO05D005972 1.0e-195 687.2 458 73.1
Carub.0004s2241 Capsella rubella HOM05D004762 ORTHO05D005972 1.3e-195 686.8 448 73.0
AL108U10020 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 1.7e-195 686.4 464 72.6
BraA05t19588Z Brassica rapa HOM05D004762 ORTHO05D005972 1.7e-195 686.4 447 72.9
FAN10G2322 Fragaria x ananassa HOM05D004762 ORTHO05D005972 1.7e-195 686.4 449 72.6
MD01G1154800 Malus domestica HOM05D004762 ORTHO05D005972 3.8e-195 685.3 452 73.5
Prupe.2G252400 Prunus persica HOM05D004762 ORTHO05D005972 5.0e-195 684.9 453 73.5
CsaV3_5G010300 Cucumis sativus L. HOM05D004762 ORTHO05D005972 1.1e-194 683.7 449 73.5
Gohir.D13G015700 Gossypium hirsutum HOM05D004762 ORTHO05D005972 1.1e-194 683.7 458 74.2
Sed0015827 Sechium edule HOM05D004762 ORTHO05D005972 1.1e-194 683.7 450 72.7
PSO675G7276 Papaver somniferum HOM05D004762 ORTHO05D005972 1.4e-194 683.3 463 71.1
VMungo0331G1989 Vigna mungo HOM05D004762 ORTHO05D005972 2.5e-194 682.6 451 73.4
Cc08_g07190 Coffea canephora HOM05D004762 ORTHO05D005972 3.2e-194 682.2 461 72.5
Glyma.16G025200 Glycine max HOM05D004762 ORTHO05D005972 3.2e-194 682.2 434 75.6
Phvul.010G113600 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 4.2e-194 681.8 458 73.4
arahy.Tifrunner.gnm1.ann1.YY9F0M Arachis hypogaea HOM05D004762 ORTHO05D005972 5.5e-194 681.4 453 73.7
Glyma.07G056300 Glycine max HOM05D004762 ORTHO05D005972 7.2e-194 681.0 457 73.1
BcaC02g12138 Brassica carinata HOM05D004762 ORTHO05D005972 1.6e-193 679.9 447 72.5
AUR62012271 Chenopodium quinoa HOM05D004762 ORTHO05D005972 2.7e-193 679.1 453 72.0
FAN06G2944 Fragaria x ananassa HOM05D004762 ORTHO05D005972 3.5e-193 678.7 478 69.0
Sc10g0002460 Simmondsia chinensis HOM05D004762 ORTHO05D005972 6.1e-193 677.9 450 72.4
PSO017G1441 Papaver somniferum HOM05D004762 ORTHO05D005972 7.9e-193 677.6 453 71.1
Aa31LG5G19380 Aethionema arabicum HOM05D004762 ORTHO05D005972 1.0e-192 677.2 461 71.4
Aqoxy7G00585 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 1.3e-192 676.8 462 70.1
C04p07190 Brassica napus HOM05D004762 ORTHO05D005972 1.3e-192 676.8 455 71.2
PSO478G3676 Papaver somniferum HOM05D004762 ORTHO05D005972 3.0e-192 675.6 452 71.5
ClCG07G004360 Citrullus lanatus HOM05D004762 ORTHO05D005972 1.5e-191 673.3 480 69.2
BolC4t22343H Brassica oleracea HOM05D004762 ORTHO05D005972 3.3e-191 672.2 456 71.1
Oeu043882.1 Olea europaea HOM05D004762 ORTHO05D005972 3.3e-191 672.2 506 67.2
DCAR_007786 Daucus carota HOM05D004762 ORTHO05D005972 9.7e-191 670.6 444 74.3
arahy.Tifrunner.gnm1.ann1.NBD53L Arachis hypogaea HOM05D004762 ORTHO05D005972 1.3e-190 670.2 463 71.7
Nn1g09364 Nelumbo nucifera HOM05D004762 ORTHO05D005972 4.8e-190 668.3 436 73.2
PSO017G5956 Papaver somniferum HOM05D004762 ORTHO05D005972 4.1e-189 665.2 475 68.4
Oeu011273.2 Olea europaea HOM05D004762 ORTHO05D005972 1.2e-188 663.7 541 63.2
FAN01G2296 Fragaria x ananassa HOM05D004762 ORTHO05D005972 1.5e-188 663.3 495 65.9
AL4G37920 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 2.0e-188 662.9 464 71.1
Gohir.A13G014500 Gossypium hirsutum HOM05D004762 ORTHO05D005972 2.6e-188 662.5 461 71.6
Hma1.2p1_0523F.1_g172170 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 8.5e-187 657.5 453 70.9
PGR142G3177 Punica granatum HOM05D004762 ORTHO05D005972 1.1e-186 657.1 449 71.5
FAN03G0495 Fragaria x ananassa HOM05D004762 ORTHO05D005972 2.3e-184 649.4 467 67.7
Zm00001eb030250 Zea mays HOM05D004762 ORTHO05D005972 1.1e-181 640.6 455 68.4
Sabra15G0114600 Salix brachista HOM05D004762 ORTHO05D005972 2.4e-181 639.4 598 56.7
HPP92_020134 Vanilla planifolia HOM05D004762 ORTHO05D005972 5.0e-179 631.7 425 71.3
ATR0580G181 Amborella trichopoda HOM05D004762 ORTHO05D005972 3.6e-177 625.5 451 67.2
CDE02G4330 Ceratophyllum demersum HOM05D004762 ORTHO05D005972 4.4e-175 618.6 462 65.4
DCAR_024818 Daucus carota HOM05D004762 ORTHO05D005972 2.7e-169 599.4 457 63.9
SGA_v2.0_scaffold44G16679 Striga asiatica HOM05D004762 ORTHO05D005972 1.8e-165 586.6 386 73.8
MELO3C018365.2 Cucumis melo HOM05D004762 ORTHO05D005972 5.3e-165 585.1 372 75.0
AUR62022908 Chenopodium quinoa HOM05D004762 ORTHO05D005972 7.2e-162 574.7 378 73.3
TPR.G15355 Trifolium pratense HOM05D004762 ORTHO05D005972 7.2e-162 574.7 360 77.8
Hma1.2p1_2705F.1_g327160 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 8.0e-161 571.2 362 76.5
AagrBONN_evm.TU.Sc2ySwM_228.3247 Anthoceros agrestis HOM05D004762 ORTHO05D005972 3.6e-153 545.8 448 61.8
SGA_v2.0_scaffold60G20982 Striga asiatica HOM05D004762 ORTHO05D005972 3.4e-151 539.3 476 58.8
Actinidia33916 Actinidia chinensis HOM05D004762 ORTHO05D005972 6.3e-150 535.0 397 67.0
Mapoly0096s0017 Marchantia polymorpha HOM05D004762 ORTHO05D005972 1.6e-148 530.4 452 60.2
unitig_748.g8448 Utricularia gibba HOM05D004762 ORTHO05D005972 1.5e-146 523.9 453 59.2
Pp3c14_26870 Physcomitrium patens HOM05D004762 ORTHO05D005972 1.6e-145 520.4 457 58.4
SMO358G0322 Selaginella moellendorffii HOM05D004762 ORTHO05D005972 9.8e-143 511.1 449 59.9
CBR_g12682 Chara braunii HOM05D004762 ORTHO05D005972 3.4e-135 486.1 447 56.4
BcaC02g12136 Brassica carinata HOM05D004762 ORTHO05D005972 3.3e-130 469.5 401 62.8
Dinv21748 Davidia involucrata HOM05D004762 ORTHO05D005972 9.2e-125 451.4 282 73.8
Hund15913 Selenicereus undatus HOM05D004762 ORTHO05D005972 7.8e-124 448.4 433 55.7
Sopen10g028440 Solanum pennellii HOM05D004762 ORTHO05D005972 1.5e-122 444.1 281 73.7
CARHR135230 Cardamine hirsuta HOM05D004762 ORTHO05D005972 3.4e-119 433.0 287 72.8
MCO10G125 Micromonas commoda HOM05D004762 ORTHO05D005972 2.2e-110 403.7 540 43.9
PSO017G2836 Papaver somniferum HOM05D004762 ORTHO05D005972 8.1e-105 385.2 251 70.1
PRCOL_00001728 Prasinoderma coloniale HOM05D004762 ORTHO05D005972 3.9e-99 366.3 428 46.5
Os12g0583000 Oryza sativa ssp. japonica HOM05D004762 ORTHO05D005972 6.7e-99 365.5 257 68.1
Cre01.g058521 Chlamydomonas reinhardtii HOM05D004762 ORTHO05D005972 7.6e-95 352.1 540 41.5
Gohir.D06G056233 Gossypium hirsutum HOM05D004762 ORTHO05D005972 2.7e-92 343.6 249 71.5
Haze_26859 Corylus avellana HOM05D004762 ORTHO05D005972 2.9e-86 323.6 461 40.3
Gohir.D08G135600 Gossypium hirsutum HOM05D004762 ORTHO05D005972 9.0e-80 302.0 242 66.1
Gorai.004G138800 Gossypium raimondii HOM05D004762 ORTHO05D005972 9.0e-80 302.0 249 65.1
BraA04t18511Z Brassica rapa HOM05D004762 ORTHO05D001193 3.8e-70 270.0 237 61.2
BcaB01g03555 Brassica carinata HOM05D004762 ORTHO05D005972 4.8e-65 253.1 195 67.2
Cpa.g.sc1441.3 Carica papaya HOM05D004762 ORTHO05D005972 6.9e-64 249.2 154 72.7
Aqoxy4G02491 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 1.2e-60 238.4 202 58.9
Potri.015G093000 Populus trichocarpa HOM05D004762 ORTHO05D005972 2.0e-58 231.1 179 65.4
Aqoxy4G02490 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 7.0e-56 222.6 165 64.8
A04p29970 Brassica napus HOM05D004762 ORTHO05D001193 1.1e-53 215.3 237 52.7
TAR633G0702 Trochodendron aralioides HOM05D003030 ORTHO05D003610 7.2e-53 212.6 136 78.7
Phvul.010G113266 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 2.2e-41 174.5 125 64.8
Nitab4.5_0006049g0030 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.4e-40 171.8 111 75.7
SEGI_20752 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 1.0e-38 165.6 115 70.4
QL11p009420 Quercus lobata HOM05D004762 ORTHO05D005972 1.3e-38 165.2 102 84.3
Aqoxy4G02489 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 2.8e-36 157.5 106 75.5
BcaB06g29139 Brassica carinata HOM05D004762 ORTHO05D005972 2.3e-35 154.5 114 67.5
EL10Ac2g03328 Beta vulgaris HOM05D004762 ORTHO05D005972 2.6e-34 151.0 106 72.6
EL10Ac6g13956 Beta vulgaris HOM05D004762 ORTHO05D005972 2.0e-31 141.4 90 78.9
TPR.G10834 Trifolium pratense HOM05D004762 ORTHO05D005972 1.3e-30 138.7 73 79.5
Hma1.2p1_0812F.1_g222370 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 5.0e-30 136.7 337 29.7
Nitab4.5_0001180g0090 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.6e-28 131.7 94 62.8
EL10Ac6g14685 Beta vulgaris HOM05D004762 ORTHO05D005972 2.1e-20 104.8 102 55.9
BcaC01g05421 Brassica carinata HOM05D002909 ORTHO05D000493 4.7e-20 103.6 112 55.4
C03p26800 Brassica napus HOM05D000223 ORTHO05D001193 4.7e-20 103.6 112 55.4
BolC3t15065H Brassica oleracea HOM05D000223 ORTHO05D001193 4.7e-20 103.6 112 55.4
arahy.Tifrunner.gnm1.ann1.38D1EG Arachis hypogaea HOM05D005637 ORTHO05D006983 4.1e-16 90.5 66 63.6
arahy.Tifrunner.gnm1.ann1.SGI312 Arachis hypogaea HOM05D004762 ORTHO05D005972 8.6e-14 82.8 68 57.4
EL10Ac3g06411 Beta vulgaris HOM05D004762 ORTHO05D005972 1.9e-13 81.6 44 86.4
SEGI_02041 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 4.3e-13 80.5 97 45.4
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 2.3e-11 74.7 303 26.1
Lsat_1_v5_gn_3_79340 Lactuca sativa HOM05D004762 ORTHO05D231769 5.2e-11 73.6 68 60.3
CDE06G2415 Ceratophyllum demersum HOM05D004141 ORTHO05D005416 1.1e-08 65.9 404 25.0
MD13G1267900 Malus domestica HOM05D004762 ORTHO05D005972 1.1e-08 65.9 41 75.6
GSVIVG01022727001 Vitis vinifera HOM05D004762 ORTHO05D005972 1.4e-08 65.5 51 60.8
Nitab4.5_0004804g0050 Nicotiana tabacum HOM05D004762 ORTHO05D005972 3.2e-08 64.3 46 65.2
Gohir.D05G318650 Gossypium hirsutum HOM05D004762 ORTHO05D005972 4.1e-08 63.9 37 83.8
Gorai.012G079400 Gossypium raimondii HOM05D004762 ORTHO05D046822 4.1e-08 63.9 37 83.8
Medtr1g104880 Medicago truncatula HOM05D004141 ORTHO05D005416 4.1e-08 63.9 308 26.0
Aa31LG4G2230 Aethionema arabicum HOM05D004141 ORTHO05D005416 1.2e-07 62.4 311 23.8
Gohir.D07G108366 Gossypium hirsutum HOM05D004762 ORTHO05D046822 1.2e-07 62.4 37 81.1
Sed0021837 Sechium edule HOM05D004762 ORTHO05D005972 2.1e-07 61.6 43 67.4
MCO01G083 Micromonas commoda HOM05D004141 ORTHO05D005416 2.7e-07 61.2 432 25.7
MD02G1220900 Malus domestica HOM05D004762 ORTHO05D005972 1.3e-06 58.9 41 65.9
Cpa.g.sc77.17 Carica papaya HOM05D004141 ORTHO05D005416 6.6e-06 56.6 338 25.7
BraA03t11487Z Brassica rapa HOM05D000223 ORTHO05D001193 8.6e-06 56.2 31 93.5


User provided reference genes

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