Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0457301 Helianthus annuus HOM05D006173 ORTHO05D007685 9.2e-242 839.7 400 100.0
ECA247G0085 Erigeron canadensis HOM05D006173 ORTHO05D007685 4.3e-183 644.8 437 73.2
Lsat_1_v5_gn_9_32341 Lactuca sativa HOM05D006173 ORTHO05D007685 1.3e-179 633.3 440 71.1
Hma1.2p1_0044F.1_g026020 Hydrangea macrophylla HOM05D006173 ORTHO05D007685 2.7e-169 599.0 457 64.6
Actinidia17973 Actinidia chinensis HOM05D006173 ORTHO05D007685 1.4e-165 586.6 445 64.9
Thecc.05G131000 Theobroma cacao HOM05D006173 ORTHO05D007685 1.8e-165 586.3 433 66.3
Ciclev10011725m.g Citrus clementina HOM05D006173 ORTHO05D007685 4.1e-165 585.1 443 64.8
Cpa.g.sc33.197 Carica papaya HOM05D006173 ORTHO05D007685 1.2e-164 583.6 444 64.2
Gorai.007G351000 Gossypium raimondii HOM05D006173 ORTHO05D007685 1.0e-163 580.5 433 65.6
Gohir.D11G320800 Gossypium hirsutum HOM05D006173 ORTHO05D007685 2.2e-163 579.3 433 65.4
Dinv10196 Davidia involucrata HOM05D006173 ORTHO05D007685 6.5e-163 577.8 444 64.4
Gohir.A11G305400 Gossypium hirsutum HOM05D006173 ORTHO05D007685 1.1e-162 577.0 433 65.1
Potri.016G030400 Populus trichocarpa HOM05D006173 ORTHO05D007685 3.2e-162 575.5 445 63.4
Oeu060754.2 Olea europaea HOM05D006173 ORTHO05D007685 2.7e-161 572.4 474 61.2
Manes.10G077600 Manihot esculenta HOM05D006173 ORTHO05D007685 4.7e-161 571.6 446 63.9
Duzib106G1718 Durio zibethinus HOM05D006173 ORTHO05D007685 3.0e-160 568.9 432 64.4
Atru.chr1.1516 Acer truncatum HOM05D006173 ORTHO05D007685 2.6e-159 565.8 447 63.3
ClCG10G016510 Citrullus lanatus HOM05D006173 ORTHO05D007685 1.3e-158 563.5 487 60.0
CsaV3_3G039830 Cucumis sativus L. HOM05D006173 ORTHO05D007685 1.7e-158 563.1 448 63.2
Cfa019941 Carpinus fangiana HOM05D006173 ORTHO05D007685 3.7e-158 562.0 447 62.9
Cc06_g22820 Coffea canephora HOM05D006173 ORTHO05D007685 6.3e-158 561.2 461 60.1
Prupe.7G021600 Prunus persica HOM05D006173 ORTHO05D007685 1.4e-157 560.1 444 63.5
PSO541G4485 Papaver somniferum HOM05D006173 ORTHO05D007685 3.1e-157 558.9 430 64.0
Sed0007984 Sechium edule HOM05D006173 ORTHO05D007685 1.2e-156 557.0 448 62.9
CiPaw.10G124100 Carya illinoinensis HOM05D006173 ORTHO05D007685 2.9e-155 552.4 447 62.0
PSO675G1003 Papaver somniferum HOM05D006173 ORTHO05D007685 6.5e-155 551.2 430 63.7
MELO3C009724.2 Cucumis melo HOM05D006173 ORTHO05D007685 1.1e-154 550.4 448 61.8
EL10Ac3g07343 Beta vulgaris HOM05D006173 ORTHO05D007685 7.2e-154 547.7 437 61.3
FAN10G0117 Fragaria x ananassa HOM05D006173 ORTHO05D007685 1.6e-153 546.6 435 62.3
PGSC0003DMG400017881 Solanum tuberosum HOM05D006173 ORTHO05D007685 2.7e-153 545.8 438 61.2
FvH4_7g04320 Fragaria vesca HOM05D006173 ORTHO05D007685 3.6e-153 545.4 426 62.7
Lj1g0020171 Lotus japonicus HOM05D006173 ORTHO05D007685 3.6e-153 545.4 450 59.6
TWI74G0774 Tripterygium wilfordii HOM05D006173 ORTHO05D007685 6.1e-153 544.7 450 59.8
Medtr7g088540 Medicago truncatula HOM05D006173 ORTHO05D007685 8.0e-153 544.3 451 58.5
Haze_20298 Corylus avellana HOM05D006173 ORTHO05D007685 5.2e-152 541.6 467 59.1
Sopen08g011280 Solanum pennellii HOM05D006173 ORTHO05D007685 8.8e-152 540.8 437 60.9
BolC8t50833H Brassica oleracea HOM05D006173 ORTHO05D007685 1.1e-151 540.4 445 60.0
Sabra16G0033900 Salix brachista HOM05D006173 ORTHO05D007685 1.1e-151 540.4 492 56.1
Solyc08g016801.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 2.6e-151 539.3 437 60.6
C08p32150 Brassica napus HOM05D006173 ORTHO05D007685 5.7e-151 538.1 445 59.6
A09p49770 Brassica napus HOM05D006173 ORTHO05D007685 9.7e-151 537.3 445 59.1
BraA09t40430Z Brassica rapa HOM05D006173 ORTHO05D007685 9.7e-151 537.3 445 59.1
Migut.K00169 Erythranthe guttata HOM05D006173 ORTHO05D007685 9.7e-151 537.3 434 61.1
Thhalv10005968m.g Eutrema salsugineum HOM05D006173 ORTHO05D007685 2.2e-150 536.2 444 59.7
BcaC07g40109 Brassica carinata HOM05D006173 ORTHO05D007685 4.8e-150 535.0 443 59.4
Glyma.03G120400 Glycine max HOM05D006173 ORTHO05D007685 1.1e-149 533.9 445 59.3
MSTRG.10773 Avicennia marina HOM05D006173 ORTHO05D007685 1.8e-149 533.1 437 60.6
Phvul.001G116600 Phaseolus vulgaris HOM05D006173 ORTHO05D007685 1.8e-149 533.1 444 58.8
Peaxi162Scf00937g00117 Petunia axillaris HOM05D006173 ORTHO05D007685 2.4e-149 532.7 417 63.1
Glyma.19G125000 Glycine max HOM05D006173 ORTHO05D007685 7.0e-149 531.2 445 59.6
PGR142G0634 Punica granatum HOM05D006173 ORTHO05D007685 1.2e-148 530.4 451 59.9
arahy.Tifrunner.gnm1.ann1.NS6SL1 Arachis hypogaea HOM05D006173 ORTHO05D007685 3.5e-148 528.9 461 56.6
BcaC07g40002 Brassica carinata HOM05D006173 ORTHO05D007685 4.5e-148 528.5 441 59.2
Eucgr.K01689 Eucalyptus grandis HOM05D006173 ORTHO05D007685 2.9e-147 525.8 453 58.3
Os12g0129400 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 4.2e-146 521.9 443 57.3
VMungo0331G1996 Vigna mungo HOM05D006173 ORTHO05D007685 5.5e-146 521.5 445 58.4
THA.LOC104814894 Tarenaya hassleriana HOM05D006173 ORTHO05D007685 2.1e-145 519.6 440 58.6
Zm00001eb405260 Zea mays HOM05D006173 ORTHO05D007685 4.7e-145 518.5 443 56.9
FAN01G1644 Fragaria x ananassa HOM05D006173 ORTHO05D007685 1.4e-144 516.9 528 52.5
arahy.Tifrunner.gnm1.ann1.TSE1DU Arachis hypogaea HOM05D006173 ORTHO05D007685 1.8e-144 516.5 481 55.1
Os11g0132700 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 5.2e-144 515.0 443 56.2
CARHR167050 Cardamine hirsuta HOM05D006173 ORTHO05D007685 5.7e-143 511.5 445 58.0
AT3G56900 Arabidopsis thaliana HOM05D006173 ORTHO05D007685 1.3e-142 510.4 445 57.8
AL5G38300 Arabidopsis lyrata HOM05D006173 ORTHO05D007685 1.7e-142 510.0 445 57.5
Sp5g05690 Schrenkiella parvula HOM05D006173 ORTHO05D007685 2.8e-142 509.2 444 57.7
Carub.0005s2364 Capsella rubella HOM05D006173 ORTHO05D007685 3.7e-142 508.8 445 57.3
MD12G1112000 Malus domestica HOM05D006173 ORTHO05D007685 1.1e-141 507.3 519 52.4
TPR.G27968 Trifolium pratense HOM05D006173 ORTHO05D007685 1.4e-141 506.9 341 68.9
FAN06G1001 Fragaria x ananassa HOM05D006173 ORTHO05D007685 1.8e-141 506.5 443 59.6
Aa31LG10G11760 Aethionema arabicum HOM05D006173 ORTHO05D007685 1.2e-140 503.8 517 51.1
CSS0033436 Camellia sinensis var. sinensis HOM05D006173 ORTHO05D007685 5.9e-140 501.5 423 60.8
SEGI_22413 Sequoiadendron giganteum HOM05D006173 ORTHO05D007685 4.2e-138 495.4 462 54.3
AUR62020996 Chenopodium quinoa HOM05D006173 ORTHO05D007685 5.7e-135 485.0 424 58.7
Hund19061 Selenicereus undatus HOM05D006173 ORTHO05D007685 4.1e-133 478.8 419 58.0
CDE02G3082 Ceratophyllum demersum HOM05D006173 ORTHO05D007685 6.6e-131 471.5 434 55.5
Aqoxy3G01734 Aquilegia oxysepala HOM05D006173 ORTHO05D007685 5.6e-130 468.4 323 69.7
vmacro07758 Vaccinium macrocarpon HOM05D006173 ORTHO05D007685 1.0e-128 464.2 478 52.3
TAR623G0939 Trochodendron aralioides HOM05D006173 ORTHO05D007685 1.3e-126 457.2 397 59.2
Sc19g0007880 Simmondsia chinensis HOM05D006173 ORTHO05D007685 4.6e-124 448.7 393 59.0
AUR62018437 Chenopodium quinoa HOM05D006173 ORTHO05D007685 1.7e-123 446.8 356 63.5
SalBow1G0987 Salvia bowleyana HOM05D006173 ORTHO05D007685 2.2e-118 429.9 467 50.3
Mapoly0010s0124 Marchantia polymorpha HOM05D006173 ORTHO05D007685 1.1e-114 417.5 477 45.5
SGA_v2.0_scaffold106G30556 Striga asiatica HOM05D006173 ORTHO05D007685 4.4e-111 405.6 455 49.2
MBI19_g25019_MAGBIO Magnolia biondii HOM05D006173 ORTHO05D007685 2.2e-102 376.7 345 57.1
SMO116G0186 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 6.4e-102 375.2 445 43.1
Psat3g082320 Pisum sativum HOM05D006173 ORTHO05D007685 8.4e-102 374.8 352 56.2
SMO133G0039 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 8.4e-102 374.8 445 43.1
Pp3c11_18220 Physcomitrium patens HOM05D006173 ORTHO05D007685 2.7e-100 369.8 458 41.7
GSVIVG01025850001 Vitis vinifera HOM05D006173 ORTHO05D007685 4.6e-100 369.0 208 79.8
MD14G1101100 Malus domestica HOM05D006173 ORTHO05D007685 3.6e-97 359.4 212 77.4
Solyc08g016808.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 1.2e-95 354.4 296 60.1
RhsimUnG0020600 Rhododendron simsii HOM05D006173 ORTHO05D007685 3.2e-93 346.3 429 45.9
RcHm_v2.0_Chr1g0329271 Rosa chinensis HOM05D006173 ORTHO05D007685 3.5e-92 342.8 198 78.8
Nitab4.5_0000211g0120 Nicotiana tabacum HOM05D006173 ORTHO05D007685 3.0e-91 339.7 248 66.9
Ca_08352_v3 Cicer arietinum L. HOM05D006173 ORTHO05D007685 1.5e-90 337.4 231 68.0
Lalb_Chr22g0358001 Lupinus albus HOM05D006173 ORTHO05D007685 3.3e-90 336.3 198 76.8
ATR0307G134 Amborella trichopoda HOM05D006173 ORTHO05D007685 5.3e-88 328.9 198 73.7
QL07p014498 Quercus lobata HOM05D006173 ORTHO05D007685 2.0e-87 327.0 185 79.5
Nitab4.5_0003840g0020 Nicotiana tabacum HOM05D006173 ORTHO05D007685 1.3e-86 324.3 243 64.6
VMungo1383G1641 Vigna mungo HOM05D006173 ORTHO05D007685 5.5e-77 292.4 418 43.5
SMO069G0001 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 7.1e-77 292.0 230 55.7
HPP92_002170 Vanilla planifolia HOM05D006173 ORTHO05D007685 1.7e-70 270.8 170 70.6
unitig_46.g18486 Utricularia gibba HOM05D006173 ORTHO05D007685 3.2e-69 266.5 200 64.5
Lj1A24G66 Lonicera japonica HOM05D006173 ORTHO05D007685 1.0e-67 261.5 159 76.1
CBR_g54315 Chara braunii HOM05D006173 ORTHO05D007685 1.6e-57 227.6 336 38.7
CANSAT64G0701 Cannabis sativa HOM05D006173 ORTHO05D007685 2.6e-55 220.3 135 74.1
RcHm_v2.0_Chr1g0329281 Rosa chinensis HOM05D006173 ORTHO05D007685 3.4e-55 219.9 208 53.8
FAN03G1994 Fragaria x ananassa HOM05D006173 ORTHO05D007685 2.2e-54 217.2 216 52.3
Lj1A24G67 Lonicera japonica HOM05D006173 ORTHO05D007685 4.4e-50 203.0 257 45.1
MD14G1101000 Malus domestica HOM05D006173 ORTHO05D007685 2.0e-47 194.1 241 46.5
Lalb_Chr22g0357991 Lupinus albus HOM05D006173 ORTHO05D007685 7.7e-47 192.2 232 44.8
ATR0307G100 Amborella trichopoda HOM05D006173 ORTHO05D007685 1.4e-45 188.0 232 43.5
DCAR_020632 Daucus carota HOM05D002466 ORTHO05D002668 1.8e-40 171.0 120 64.2
Solyc08g036600.3 Solanum lycopersicum HOM05D006173 ORTHO05D007685 1.8e-40 171.0 198 46.0
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 5.3e-40 169.5 210 42.9
TAR623G0990 Trochodendron aralioides HOM05D006173 ORTHO05D007685 2.5e-37 160.6 97 76.3
PRCOL_00002577 Prasinoderma coloniale HOM05D006173 ORTHO05D007685 9.4e-37 158.7 275 31.3
Nitab4.5_0000275g0010 Nicotiana tabacum HOM05D006173 ORTHO05D007685 8.8e-35 152.1 90 72.2
SGA_v2.0_scaffold106G30559 Striga asiatica HOM05D000268 ORTHO05D000261 4.8e-33 146.4 264 37.9
QL07p014493 Quercus lobata HOM05D006173 ORTHO05D007685 2.0e-31 141.0 159 46.5
GSVIVG01025851001 Vitis vinifera HOM05D006173 ORTHO05D007685 2.7e-31 140.6 184 42.9
Nitab4.5_0000211g0140 Nicotiana tabacum HOM05D006173 ORTHO05D007685 2.5e-29 134.0 87 71.3
Lj2A730T36 Lonicera japonica HOM05D006173 ORTHO05D007685 4.0e-27 126.7 228 35.5
MCO12G281 Micromonas commoda HOM05D006173 ORTHO05D007685 5.2e-27 126.3 420 25.5
Nitab4.5_0003840g0030 Nicotiana tabacum HOM05D006173 ORTHO05D007685 8.3e-25 119.0 70 72.9
Lsat_1_v5_gn_4_93961 Lactuca sativa HOM05D006173 ORTHO05D007685 3.4e-18 97.1 50 86.0
Lj2A730T35 Lonicera japonica HOM05D006173 ORTHO05D007685 2.0e-15 87.8 58 70.7
Cre10.g466300 Chlamydomonas reinhardtii HOM05D006173 ORTHO05D007685 5.6e-13 79.7 344 23.5
Os12g0131300 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 4.4e-10 70.1 57 57.9


User provided reference genes

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